BAC Information

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BAC

Clone NameB6Ng01-159C15
Chromosome4 (Build37)
Map Location 123,245,072 - 123,245,945
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C15.bB6Ng01-159C15.g
ACCDH952913DH952914
length1,274874
definitionDH952913|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C15, 5' end.DH952914|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtattctggaaaaaagcccacaaggacttgcttccataaggag
gtaaagtcaatgccaagttcccaggatgtttaaggtcagtttgactgtct
ggcttggggggtagggctgtaggctacaagctgagatcctgtgagacaca
gtaagagccccagggacctttgctgagcatactctgccagtggcctgcag
aaactctaaaaagccaaagccccagccccctaactccagcactttggagg
cagaggcaggttcaaggcaaacctggtctatgccagctgaggctatatag
taaaaccctgtctccaaacaaacaaaacccccaaaacagcatgcacactc
gcgcgcgcgcacacacacacacacacacacacacacacacgaaaaaaagg
caaagatgacccagtttctctcctaagatgacctcctgaagcacctttgg
aagtgtgctagttgctttttgtctatttgactcaatacctagaggtatct
ggaaagagagattcctaattgcgaaaaatgcttcaataggatttgcttgt
cctgatggcactggtggctcacccctttaatcctagcacttaggagctag
aggcaggcagatctctgtgaatttgaggccagcttggtctacagagtgag
ttccaggagagccagagctacatagtgagactctgtctcaaaaaacaaaa
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaa
gaaggaaggaagctggctgagcaaagcacgaggaacaagccagtaagcag
cattcccccatggcttctgcttccgttcctgcctccaagttcctgccttg
agttcctgctcagacttccctccctatagtcctctatgctgtacatgtga
gcacacatatgtgcaatctaaacttcatgctttacataaaaattaactta
acagggaacacaggattaatgtaaaagaagtgcttagagataacatagat
gacgtcaggaggacctgggtttcaaagagtcctcacacatgacaactaaa
gcatgatctaagaaaagagcaggcagatgcgatgcactctatatcaaagg
caaaaggttgtaaggaatcggtgtgtgaacactgaaggcctgttttcatt
tggttctgaagaaaaccaaaagtcagcggccaaagagactggtggaaagg
taggactcagtttctcctacgacctcgatgattatatgcagattatacag
gaagagggaaatgagtagaatatc
gaattcattggcaggggttcaggtagtgggagggggtgttcaacagaact
agagaaataacggaagactcaagacatcaataaaatttgagaataagaat
attctcagtatgtgaatgtaagtgttgacagtatgtattaaaatacttaa
aatgtgactatctgaaaatacttaaagttctaactagtaattgagtgttt
acaaactgtcagtgccttcttgtaccttgtatcacatctgctaaagagat
ggtgacttgagaatatggccccaaaaagctgtctacttatgttcctataa
ccagatctcactcccagtaatttcttcaccacctttcagctgtactccac
ctccccccgacacacacacggtgggggtgggggagaatcacattttcaaa
gtaaaataataaattaaattgtcccaagagtactagaatagcaaagaatt
aagaaataacactgtaatggaaaaggggtgtgctgagggaaggtagtaat
taattgtcgaatataagctagcctgatacttaaaagagggaggaagatga
tctcctctaggaagaatttgaactgagaggtttaagttagaggtacaact
gtcaaaatgttgctaacaacagtccataggttctatgttctacaatttat
atgtcttttaagcaagtatgaatgctgtcttattttactgttctactcct
atgaggaaacaccacaaccacagcagcttttaaaagcatttaatgggggc
ctgcttaaagtttcatcaggttagtctaattaccatcatagggaacatga
ttggcatgcaggcagcaggcagcaggcatactggagtgaaacgcacatct
gatctgcaaatgtaggcagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123245072_123245945
seq2: B6Ng01-159C15.g_69_942

seq1  GAATTCATTGGCAGGGGTTCAGGTAGTGGGAGGGGGTGTTCAACAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCAGGGGTTCAGGTAGTGGGAGGGGGTGTTCAACAGAACT  50

seq1  AGAGAAATAACGGAAGACTCAAGACATCAATAAAATTTGAGAATAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAACGGAAGACTCAAGACATCAATAAAATTTGAGAATAAGAAT  100

seq1  ATTCTCAGTATGTGAATGTAAGTGTTGACAGTATGTATTAAAATACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGTATGTGAATGTAAGTGTTGACAGTATGTATTAAAATACTTAA  150

seq1  AATGTGACTATCTGAAAATACTTAAAGTTCTAACTAGTAATTGAGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTATCTGAAAATACTTAAAGTTCTAACTAGTAATTGAGTGTTT  200

seq1  ACAAACTGTCAGTGCCTTCTTGTACCTTGTATCACATCTGCTAAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGTCAGTGCCTTCTTGTACCTTGTATCACATCTGCTAAAGAGAT  250

seq1  GGTGACTTGAGAATATGGCCCCAAAAAGCTGTCTACTTATGTTCCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTGAGAATATGGCCCCAAAAAGCTGTCTACTTATGTTCCTATAA  300

seq1  CCAGATCTCACTCCCAGTAATTTCTTCACCACCTTTCAGCTGTACTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCACTCCCAGTAATTTCTTCACCACCTTTCAGCTGTACTCCAC  350

seq1  CTCCCCCCGACACACACACGGTGGGGGTGGGGGAGAATCACATTTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCGACACACACACGGTGGGGGTGGGGGAGAATCACATTTTCAAA  400

seq1  GTAAAATAATAAATTAAATTGTCCCAAGAGTACTAGAATAGCAAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAATAAATTAAATTGTCCCAAGAGTACTAGAATAGCAAAGAATT  450

seq1  AAGAAATAACACTGTAATGGAAAAGGGGTGTGCTGAGGGAAGGTAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAACACTGTAATGGAAAAGGGGTGTGCTGAGGGAAGGTAGTAAT  500

seq1  TAATTGTCGAATATAAGCTAGCCTGATACTTAAAAGAGGGAGGAAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCGAATATAAGCTAGCCTGATACTTAAAAGAGGGAGGAAGATGA  550

seq1  TCTCCTCTAGGAAGAATTTGAACTGAGAGGTTTAAGTTAGAGGTACAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTAGGAAGAATTTGAACTGAGAGGTTTAAGTTAGAGGTACAACT  600

seq1  GTC-AAATGTTGCTAACAACAGTCCATAGGTTCTATGTTCTACAA-TTAT  648
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCAAAATGTTGCTAACAACAGTCCATAGGTTCTATGTTCTACAATTTAT  650

seq1  ATGTC-TTTAAGCAAAGTATGAATGCTGTCTTA-TTTACTGTTCTACTCC  696
      ||||| ||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ATGTCTTTTAAGC-AAGTATGAATGCTGTCTTATTTTACTGTTCTACTCC  699

seq1  TATGAGGAAACACCACAACCACAGCAGCTTTTAAAAGCATTTAATGGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAAACACCACAACCACAGCAGCTTTTAAAAGCATTTAATGGGGG  749

seq1  CCTGCTTAAAGTTTCATCAGGTTAGTCT-ATTACCATCATAGGGAACATG  795
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGCTTAAAGTTTCATCAGGTTAGTCTAATTACCATCATAGGGAACATG  799

seq1  A-TGGCAGGCAGGCAGGCAGGCAGGCAGGCATAGCTGGAGTGAAAACGCA  844
      | ||||| ||||||| ||||||| ||||||||| |||||||| |||||||
seq2  ATTGGCATGCAGGCA-GCAGGCA-GCAGGCATA-CTGGAGTG-AAACGCA  845

seq1  CATCTGATCTGCAAATTGTAGGCAGAAGAG  874
      ||||||||||||||| ||||||||||||||
seq2  CATCTGATCTGCAAA-TGTAGGCAGAAGAG  874