BAC Information

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BAC

Clone NameB6Ng01-159E24
Chromosome4 (Build37)
Map Location 81,013,934 - 81,122,606
singlet/doubletdoublet
Overlap geneMpdz, LOC100040131
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159E24.bB6Ng01-159E24.g
ACCDH953011DH953012
length3831,015
definitionDH953011|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E24, 5' end.DH953012|Mus musculus domesticus DNA, BAC clone: B6Ng01-159E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,013,934 - 81,014,316)(81,121,595 - 81,122,606)
sequence
ttagatggcctgaacaattctctgtgaaactgttatcaagcccagtttca
ggaagaagtggtagtgtatcctgaaatgcagcactcaggagccagcctgg
gccacggagcaagaccttgccccagaaaacaatcatcacagcagaaaaca
attgacagaatcaaaattcccaaacaaacaaacactccacatgtttccat
tcctaaaaattctaagagtttctgtgtttgtttttaaatactttatattt
tactattgtttcacagttgggtgttcaactgtgaaatatacataaacagt
aagttaaaactacacatgttaccaaatgatacctcaagagtaagtctggt
gtgtgtgtcagtgtgtgtgtgtgtgtgtgtgtg
gaattcaattctggaaaatacaggaaggtgggtggagatgaccaactcca
acctggatgtgcccccccctcacagatgccaacacatcagtacctacaca
cacatcgggcaccaagagcacaaacacacactaaaagcaattttcaaatg
caatcaagctagaagttttcttgttctttaaattttcaattgaatgtcct
gaaaatatttctttgtcagcatatggacatttattttattggtagcatag
ttttccacatacaccctatgtgttttcccattctttgtctctcaatgccc
actagcagaaccattggacttggacctggtgtagacttttcttactagaa
gaattttgaaatgaatataatagtaaagaaatctaagttttatatatgtg
tatgtgaatatatattaatttgaaatacaattgaagatacaaaaggagtg
gatccaagtatatgctcaggagatattttagcagatatctctaaacagac
ttggaactggttcatttgtttacctttccaccaacatcatcttacttttt
cacacactttcaccaacgttcaaaattaattctatttttagttgataaaa
tatctttatagtgtataacatgttttgaaatacaagcacattgcaagtag
ataaattgcctaatattcactccttcatatatttatttcttcattatatg
aacagttaaagcttactcttaccaattttgaaatatgtgcacaaaactca
agtccaagaagatcaaagacttcaacataaaactagatacactaaatcta
atagcagagaaagtgaggatagatagccttgaactaattggcacagggga
cacttcctgaatggaacactaacagctcagcacaaaatcacattattaat
aggatccacgaaactgaaagctgctctacggcaaagatgctgtcaaggac
aaaatagcagcctaccaatgggaaatagttccacatttcacatctgacag
aggctgccattcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81013934_81014316
seq2: B6Ng01-159E24.b_50_432

seq1  TTAGATGGCCTGAACAATTCTCTGTGAAACTGTTATCAAGCCCAGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGCCTGAACAATTCTCTGTGAAACTGTTATCAAGCCCAGTTTCA  50

seq1  GGAAGAAGTGGTAGTGTATCCTGAAATGCAGCACTCAGGAGCCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTGGTAGTGTATCCTGAAATGCAGCACTCAGGAGCCAGCCTGG  100

seq1  GCCACGGAGCAAGACCTTGCCCCAGAAAACAATCATCACAGCAGAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGAGCAAGACCTTGCCCCAGAAAACAATCATCACAGCAGAAAACA  150

seq1  ATTGACAGAATCAAAATTCCCAAACAAACAAACACTCCACATGTTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGAATCAAAATTCCCAAACAAACAAACACTCCACATGTTTCCAT  200

seq1  TCCTAAAAATTCTAAGAGTTTCTGTGTTTGTTTTTAAATACTTTATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAATTCTAAGAGTTTCTGTGTTTGTTTTTAAATACTTTATATTT  250

seq1  TACTATTGTTTCACAGTTGGGTGTTCAACTGTGAAATATACATAAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTTTCACAGTTGGGTGTTCAACTGTGAAATATACATAAACAGT  300

seq1  AAGTTAAAACTACACATGTTACCAAATGATACCTCAAGAGTAAGTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAACTACACATGTTACCAAATGATACCTCAAGAGTAAGTCTGGT  350

seq1  GTGTGTGTCAGTGTGTGTGTGTGTGTGTGTGTG  383
      |||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCAGTGTGTGTGTGTGTGTGTGTGTG  383

seq1: chr4_81121595_81122606
seq2: B6Ng01-159E24.g_88_1081 (reverse)

seq1  TTTGAATGGCAGCCCTCTGTCAGATGTGGAATGGGTGGAACTATTTTCCC  50
      |||||||||||| ||||||||||||||| |||  ||||||||| ||||||
seq2  TTTGAATGGCAG-CCTCTGTCAGATGTGAAAT--GTGGAACTA-TTTCCC  46

seq1  ATTTGGTAGGCTGCTATTTTGTCCTTTTGACAGCATCTTTTGCCGTAGAG  100
      | ||||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  A-TTGGTAGGCTGCTATTTTGTCC--TTGACAGCATC-TTTGCCGTAGAG  92

seq1  CAGCTTTTCAGTTTCGTTGGATCCTATTTAATAATTGTTGATTTTTGTGC  150
      |||| ||||||||||| ||||||||| ||||||||   ||| ||||||||
seq2  CAGC-TTTCAGTTTCG-TGGATCCTA-TTAATAAT--GTGA-TTTTGTGC  136

seq1  TTGAGCTGTTAGTGTTCCATTCAGGAAGTTGTCCCCTGTGCCAATTAGTT  200
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  -TGAGCTGTTAGTGTTCCATTCAGGAAG-TGTCCCCTGTGCCAATTAGTT  184

seq1  CAAGGCTATTCTATTCCTCACTTTCTCTGCTATTAGATTTAGTGTATCTA  250
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTA-TCTA-TCCTCACTTTCTCTGCTATTAGATTTAGTGTATCTA  232

seq1  GTTTTATGTTGAAGTCTTTGATCTTCTTGGACTTGAGTTTTGTGCACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTTGAAGTCTTTGATCTTCTTGGACTTGAGTTTTGTGCACATA  282

seq1  TTTCAAAATTGGTAAGAGTAAGCTTTAACTGTTCATATAATGAAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATTGGTAAGAGTAAGCTTTAACTGTTCATATAATGAAGAAATA  332

seq1  AATATATGAAGGAGTGAATATTAGGCAATTTATCTACTTGCAATGTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAAGGAGTGAATATTAGGCAATTTATCTACTTGCAATGTGCTT  382

seq1  GTATTTCAAAACATGTTATACACTATAAAGATATTTTATCAACTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAAAACATGTTATACACTATAAAGATATTTTATCAACTAAAAAT  432

seq1  AGAATTAATTTTGAACGTTGGTGAAAGTGTGTGAAAAAGTAAGATGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATTTTGAACGTTGGTGAAAGTGTGTGAAAAAGTAAGATGATGT  482

seq1  TGGTGGAAAGGTAAACAAATGAACCAGTTCCAAGTCTGTTTAGAGATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAAGGTAAACAAATGAACCAGTTCCAAGTCTGTTTAGAGATATC  532

seq1  TGCTAAAATATCTCCTGAGCATATACTTGGATCCACTCCTTTTGCATCTT  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTAAAATATCTCCTGAGCATATACTTGGATCCACTCCTTTTGTATCTT  582

seq1  CAATTGTATTTCAAATTAATATATATTCACATACACATATATAAAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTATTTCAAATTAATATATATTCACATACACATATATAAAACTTA  632

seq1  GATTTCTTTACTATTATATTCATTTCAAAATTCTTCTAGTAAGAAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTACTATTATATTCATTTCAAAATTCTTCTAGTAAGAAAAGTC  682

seq1  TACACCAGGTCCAAGTCCAATGGTTCTGCTAGTGGGCATTGAGAGACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGGTCCAAGTCCAATGGTTCTGCTAGTGGGCATTGAGAGACAAA  732

seq1  GAATGGGAAAACACATAGGGTGTATGTGGAAAACTATGCTACCAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAAAACACATAGGGTGTATGTGGAAAACTATGCTACCAATAAAA  782

seq1  TAAATGTCCATATGCTGACAAAGAAATATTTTCAGGACATTCAATTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCCATATGCTGACAAAGAAATATTTTCAGGACATTCAATTGAAA  832

seq1  ATTTAAAGAACAAGAAAACTTCTAGCTTGATTGCATTTGAAAATTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAACAAGAAAACTTCTAGCTTGATTGCATTTGAAAATTGCTTT  882

seq1  TAGTGTGTGTTTGTGCTCTTGGTGCCCGATGTGTGTGTAGGTACTGATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGTTTGTGCTCTTGGTGCCCGATGTGTGTGTAGGTACTGATGT  932

seq1  GTTGGCATCTGTGAGGGGGGGGCACATCCAGGTTGGAGTTGGTCATCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATCTGTGAGGGGGGGGCACATCCAGGTTGGAGTTGGTCATCTCC  982

seq1  ACCCACCTTCCT  1012
      ||||||||||||
seq2  ACCCACCTTCCT  994