BAC Information

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BAC

Clone NameB6Ng01-159N21
Chromosome4 (Build37)
Map Location 144,464,569 - 144,465,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N21.bB6Ng01-159N21.g
ACCDH953405DH953406
length8551,055
definitionDH953405|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N21, 5' end.DH953406|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatccacaggggagtagtatattattgctgcagcttccttctttc
cccatcagcaaatattgaggggctcccactatgggcttttttgagaatag
cttgagggatagccatcacaaatgaaggagggcagaggcccatttttcgt
caggttaatgtttgtaaatttgtcctgagaatccttttaagctgatagca
aaacagaagtgatttttgattaaccattgaatatttgaaagggagaaggg
ggtgataagaatgtcagttcttttcctagggtttctagggctctgtctct
gccatttttaatcataatagagagtgcatccacttcatttaaaaatcggt
gtgtgccaccaattggggtgtggagccattccagcactccctgaggttgg
tatagggctctcacaagtctggaggaggaattgaagataaggagttgtat
aagtattgttgggtcatagctagcaagagccatatcttttaggcttccat
tggtgaaatgtggagcttggattgcttcacagaacagtgttctgggcaag
gaggaccttttaactctttttaggaggttaaagagaagtggaagcacact
tgtgggaaagggaagccatggtcaaagccacttatagttacccaaagagc
tctggaaggaatcaaggcttaatttttgagggaaagaaagggtggatttg
agggagcatattgaggtatgggatatctctgttcctaaaaattcaatggt
cagaataagttgaatttatgagggactattttgaatcctagggcagatag
gtaaggtctttaagataggcttgtctataagttgggaggaggaggaggag
gaaga
gaattcttggctcttgatagtgaccccaagggatctgctcccaaggctgg
ggtagttgggaggatttacactgcagcatacagggcctggcctagcccac
agaatgggttggaatggggcagggggttccggcagatgcatcaccatagc
ctggtgataccagggcattcttatagggcatgagcctcaccatatcttcc
ccagatactttgggccaagcacaacaagttattgggaaatgctgtcttcc
tcctcctctctcctgcctctcccaagatattgcaagatggagatttactg
catggctggggtgtaattacatggtgattgaggctgagagctgactgttg
attgagaatggactctctggtacaactgttcctgcaagggtgtgtgtgtg
tgtctgagtgaatgtttccaggttctttgcctatcacttaaagaactgaa
aatgagggctacataaatttgcaaagggatagaaatttattagaaatgaa
gggttaatatggattagagagaatatatcatcaagatttacagctggtca
caagcgagagaatattctagagttttagtctatggcctaggatgtctttc
ttatagggtctaaaggaaggaggggctggctacagtggagagtggcttga
ggggttctgtattttgattgatagattatgccatgtgcccattcttccta
cagaactcatcctttcccataatgcatctgattttaattatatgcatgcc
caagtatgcataggcctaagattaaataaataggggattctctctgaaag
ttcacttgaaggactcagtttgccttttcgtacatgtgcctggcattggt
tcatgctggctgcccttttattcttcatataggacatattgggaatattc
tcgactagaaactttttaaatgagactgtttttaagagtggagaaattta
tagtacttgttaagaagatcaagtatgcctgaataacataggaggttcaa
gggttctccaatttgctaggcacaattgtttggagaagggtatgaccatc
gaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144464569_144465621
seq2: B6Ng01-159N21.g_66_1120 (reverse)

seq1  CATTCGATGCTCATATCCCTCTCCAAACAA-TGTGCCTAGCAAACT-GAG  48
      ||||||||| ||||| || ||||||||||| ||||||||||||| | |||
seq2  CATTCGATGGTCATACCCTTCTCCAAACAATTGTGCCTAGCAAATTGGAG  50

seq1  AACCCCTGAACCTCCTATGTATATCAGGCATACTTGAATCTCTTAAC-AG  97
      ||||| ||||||||||||||   ||||||||||||||   ||||||| ||
seq2  AACCCTTGAACCTCCTATGTTATTCAGGCATACTTGATCTTCTTAACAAG  100

seq1  TACTATAAATTTCTCCACTCTTAGAAACAGTCTCATTTAGACAGTTTCTA  147
      ||||||||||||||||||||||| ||||||||||||||| | ||||||||
seq2  TACTATAAATTTCTCCACTCTTAAAAACAGTCTCATTTAAAAAGTTTCTA  150

seq1  GTCGAGAATATTCCCAATATGTCCTATATGAAGAATAAAAGGGGCAGCCA  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCGAGAATATTCCCAATATGTCCTATATGAAGAATAAAA-GGGCAGCCA  199

seq1  GCATGAACCAATGCCAGGCACATGTACGAAAAGGCAAACTGAGTCCTTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACCAATGCCAGGCACATGTACGAAAAGGCAAACTGAGTCCTTCA  249

seq1  AGTGAACTTTCAGAGAGAATCCCCTATTTATTTAATCTTAGGCCTATGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTTCAGAGAGAATCCCCTATTTATTTAATCTTAGGCCTATGCA  299

seq1  TACTTGGGCATGCATATAATTAAAATCAGATGCATTATGGGAAAGGATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGCATGCATATAATTAAAATCAGATGCATTATGGGAAAGGATGA  349

seq1  GTTCTGTAGGAAGAATGGGCACATGGCATAATCTATCAATCAAAATACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAGGAAGAATGGGCACATGGCATAATCTATCAATCAAAATACAG  399

seq1  AACCCCTCAAGCCACTCTCCACTGTAGCCAGCCCCTCCTTCCTTTAGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCAAGCCACTCTCCACTGTAGCCAGCCCCTCCTTCCTTTAGACC  449

seq1  CTATAAGAAAGACATCCTAGGCCATAGACTAAAACTCTAGAATATTCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAAAGACATCCTAGGCCATAGACTAAAACTCTAGAATATTCTCT  499

seq1  CGCTTGTGACCAGCTGTAAATCTTGATGATATATTCTCTCTAATCCATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGTGACCAGCTGTAAATCTTGATGATATATTCTCTCTAATCCATAT  549

seq1  TAACCCTTCATTTCTAATAAATTTCTATCCCTTTGCAAATTTATGTAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTCATTTCTAATAAATTTCTATCCCTTTGCAAATTTATGTAGCC  599

seq1  CTCATTTTCAGTTCTTTAAGTGATAGGCAAAGAACCTGGAAACATTCACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCAGTTCTTTAAGTGATAGGCAAAGAACCTGGAAACATTCACT  649

seq1  CAGACACACACACACACCCTTGCAGGAACAGTTGTACCAGAGAGTCCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACACACCCTTGCAGGAACAGTTGTACCAGAGAGTCCATT  699

seq1  CTCAATCAACAGTCAGCTCTCAGCCTCAATCACCATGTAATTACACCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCAACAGTCAGCTCTCAGCCTCAATCACCATGTAATTACACCCCA  749

seq1  GCCATGCAGTAAATCTCCATCTTGCAATATCTTGGGAGAGGCAGGAGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAGTAAATCTCCATCTTGCAATATCTTGGGAGAGGCAGGAGAGA  799

seq1  GGAGGAGGAAGACAGCATTTCCCAATAACTTGTTGTGCTTGGCCCAAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGACAGCATTTCCCAATAACTTGTTGTGCTTGGCCCAAAGT  849

seq1  ATCTGGGGAAGATATGGTGAGGCTCATGCCCTATAAGAATGCCCTGGTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAAGATATGGTGAGGCTCATGCCCTATAAGAATGCCCTGGTAT  899

seq1  CACCAGGCTATGGTGATGCATCTGCCGGAACCCCCTGCCCCATTCCAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTATGGTGATGCATCTGCCGGAACCCCCTGCCCCATTCCAACC  949

seq1  CATTCTGTGGGCTAGGCCAGGCCCTGTATGCTGCAGTGTAAATCCTCCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTGGGCTAGGCCAGGCCCTGTATGCTGCAGTGTAAATCCTCCCA  999

seq1  ACTACCCCAGCCTTGGGAGCAGATCCCTTGGGGTCACTATCAAGAGCCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCAGCCTTGGGAGCAGATCCCTTGGGGTCACTATCAAGAGCCAA  1049

seq1  GAATTC  1053
      ||||||
seq2  GAATTC  1055