BAC Information

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BAC

Clone NameB6Ng01-160C05
Chromosome4 (Build37)
Map Location 140,709,144 - 140,873,231
singlet/doubletdoublet
Overlap geneFbxo42, 6330545A04Rik, Arhgef19, Epha2
Upstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e
Downstream geneGm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C05.bB6Ng01-160C05.g
ACCDH953594DH953595
length151740
definitionDH953594|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C05, 5' end.DH953595|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,709,144 - 140,709,294)(140,872,494 - 140,873,231)
sequence
gaattctggatgtgcttgtattacatttttatttttaatttgtaaaaaaa
aatcttttcatttttctcaatgttactctatgttttgcttcagaaagtgg
aagtattgtgtggtactttggggtgttggggttttgtgtgtgtgtgtggt
t
gaattcttagccacttcctgtttcctctctgcacacagctgagtcctggg
tacccgtcctcaagtctcacccaggcaggtgcccctggagagtcctcact
acccctggctcacctgtttggttaatactgacgctggcagtccggaagct
tcggctagtcaccaggcctgagacaccattgcgtgcttcgacagcgaagg
tatagttcatgtggggctccaggtcactgactgtcacactcgtgcgggtc
agggcgtgaggaggttctgaatagcgcacgctcgcctcacagggcccaca
ctcgccagactctggccagcactgttcgcaagtgacactgtagacaatgt
cctggcggccaccagtgtccttgggagctgtccaacgcagttctactttg
gcacccatgccaatggccgtgaggtagttgggggcagagggtggacctgt
ccagagagtggaggtcagtggagctgcccctccctccctccctccccacc
cacccatctcaccccaccccccacccccacccccgcctcagtcacacctc
tctctggatctctgtaagactcacgtgtgcaagacatggacagtgggtcc
tcaggtgccctgaaatagccttcttccacactgggcaggaggtggcaccc
tctgtggatggcagggtatgctctggacactccaggcaagggctcttaga
tgcctcagacttgaagaaatcctggagaacggctgagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140709144_140709294
seq2: B6Ng01-160C05.b_41_191

seq1  GAATTCTGGATGTGCTTGTATTACATTTTTATTTTTAATTTGTAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATGTGCTTGTATTACATTTTTATTTTTAATTTGTAAAAAAA  50

seq1  AATCTTTTCATTTTTCTCAATGTTACTCTATGTTTTGCTTCAGAAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCATTTTTCTCAATGTTACTCTATGTTTTGCTTCAGAAAGTGG  100

seq1  AAGTATTGTGTGGTACTTTGGGGTGTTGGGGTTTTGTGTGTGTGTGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGTGTGGTACTTTGGGGTGTTGGGGTTTTGTGTGTGTGTGTGGT  150

seq1  T  151
      |
seq2  T  151

seq1: chr4_140872494_140873231
seq2: B6Ng01-160C05.g_67_806 (reverse)

seq1  CCTCTCAGCCTGTTCTCCAGGA-TTCTTCAAGTCTGAGGCATCTGAGAGC  49
      |||||||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  CCTCTCAGCC-GTTCTCCAGGATTTCTTCAAGTCTGAGGCATCTAAGAGC  49

seq1  CCTTGCCTGGAGTGTCCAGAGCATACCCTGCCATCCACAGAGGGTGCCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTGGAGTGTCCAGAGCATACCCTGCCATCCACAGAGGGTGCCAC  99

seq1  CTCCTG-CCAGTGT-GAAGAAGGCTATTTCAGGGCACCTGAGGACCCACT  147
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCCAGTGTGGAAGAAGGCTATTTCAGGGCACCTGAGGACCCACT  149

seq1  GTCCATGTCTTGCACACGTGAGTCTTACAGAGATCCAGAGAGAGGTGTGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTCTTGCACACGTGAGTCTTACAGAGATCCAGAGAGAGGTGTGA  199

seq1  CTGAGGCGGGGGTGGGGGTGGGGGGTGGGGTGAGATGGGTGGGTGGGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCGGGGGTGGGGGTGGGGGGTGGGGTGAGATGGGTGGGTGGGGAG  249

seq1  GGAGGGAGGGAGGGGCAGCTCCACTGACCTCCACTCTCTGGACAGGTCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGGGGCAGCTCCACTGACCTCCACTCTCTGGACAGGTCCA  299

seq1  CCCTCTGCCCCCAACTACCTCACGGCCATTGGCATGGGTGCCAAAGTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCCCCAACTACCTCACGGCCATTGGCATGGGTGCCAAAGTAGA  349

seq1  ACTGCGTTGGACAGCTCCCAAGGACACTGGTGGCCGCCAGGACATTGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTTGGACAGCTCCCAAGGACACTGGTGGCCGCCAGGACATTGTCT  399

seq1  ACAGTGTCACTTGCGAACAGTGCTGGCCAGAGTCTGGCGAGTGTGGGCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCACTTGCGAACAGTGCTGGCCAGAGTCTGGCGAGTGTGGGCCC  449

seq1  TGTGAGGCGAGCGTGCGCTATTCAGAACCTCCTCACGCCCTGACCCGCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCGAGCGTGCGCTATTCAGAACCTCCTCACGCCCTGACCCGCAC  499

seq1  GAGTGTGACAGTCAGTGACCTGGAGCCCCACATGAACTATACCTTCGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGACAGTCAGTGACCTGGAGCCCCACATGAACTATACCTTCGCTG  549

seq1  TCGAAGCACGCAATGGTGTCTCAGGCCTGGTGACTAGCCGAAGCTTCCGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCACGCAATGGTGTCTCAGGCCTGGTGACTAGCCGAAGCTTCCGG  599

seq1  ACTGCCAGCGTCAGTATTAACCAAACAGGTGAGCCAGGGGTAGTGAGGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGCGTCAGTATTAACCAAACAGGTGAGCCAGGGGTAGTGAGGAC  649

seq1  TCTCCAGGGGCACCTGCCTGGGTGAGACTTGAGGACGGGTACCCAGGACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGGCACCTGCCTGGGTGAGACTTGAGGACGGGTACCCAGGACT  699

seq1  CAGCTGTGTGCAGAGAGGAAACAGGAAGTGGCTAAGAATTC  738
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTGCAGAGAGGAAACAGGAAGTGGCTAAGAATTC  740