BAC Information

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BAC

Clone NameB6Ng01-160I07
Chromosome4 (Build37)
Map Location 6,254,571 - 6,398,562
singlet/doubletdoublet
Overlap geneSdcbp, Nsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160I07.bB6Ng01-160I07.g
ACCDH953871DH953872
length1,150948
definitionDH953871|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I07, 5' end.DH953872|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,254,571 - 6,255,561)(6,397,590 - 6,398,562)
sequence
gaattcccctgtactggggcatataaagtttgcaagacctaggggcctct
cttcccaatgatgggacatagtactaccggaagatccagtaatacctctc
ctgggcatatacccagaagaagttccaactggtaataagaacacatgctc
cactatgttcatagcagccttatttataatagccagaagctggaaagaac
caagatgtctctcaacagaggaatggatacagaaaatgtggtacatttac
acaatggagtactactcagcaattaaaaacaatgaatttatgaaattctt
gggcaaatggatgtatctggaagatatcatcctgagtgaggtaacccaat
cacaaaagaacacacttgatatgcattcactgctaagtagatgttagccc
agaaaggatatatttcatcttatgccttacagtctgtcacagcgggaact
cggggcagtaactacagcagtgaccctggaagaccactgcttacaagctg
ttctccatggcttgttcagtttgttttcttatataaaccaagatcacctg
ctcaggggtggtaccacctgtaccacccacaatggctaggccttccacat
caaccattaatcaggaaaatacacacacagcctgcatagtctggtaacga
ggcgtatttctgtgtgcttacttctacatccgtgattttggtctggttta
actactgctaatctatatggcaaatgcctgaatgactatgagcacctaac
aggctccgaatgcttgatgagagagtcaaccgcaatgtgaaactgccaac
aaagtggccagtctctgcggtaagctcttagatttgggttgtggggcagt
gcctggaaccagagtcctccatgtccataaagtccttcaagaaaagacct
aaggctagccaagaacaatttatccaggtaaagccttaaagcatcatttt
ttctattttacctagtatttgagtaagtagactcttgagttacttaggcc
tatatctcacagagatttacagtttgaattatattaatatttaactcctc
cccgcgtatcttgttcttcccaggagatcatggccttgaaacagagcttt
attttttgatatgactgacccaggtcctggtcaatgctaagccaggctct


gaattctgtgatgttccttgatgtaatgattttttttgtttgtttttttg
ttttttttttttttttttttttttttttggttttttgagacagggtttct
ctgtatagccctgctggctgtcctggaactcactttgtagaccaggctgg
cttcgaactcagaaatccacctgcctctgcctcccaagtgttggggatgt
aatgattcttaaacaatcaaaaattggggcataggggcacagcgcagcat
agtcctaatggtccaggtacatgctatgagttctcatctcagaaacaatg
caataactgtacaatggtagttccaaattaatgcttgactaacaaagaaa
agtttgaagaaattatgtttagaaataaattaagaaaatgaagcagagcc
aatattatgaccccgagaaataaaagctattgaatttatgaaataagttt
tacacatttgacagtggttcctgctctcctttggaaatgtatagataata
aaatatagaatgcagaaaattatatactagtaaaactaagtcaaaacact
gggactcttaggagagtcattgtgtgcaatgtgcagaagcagaaagctag
cggaactgctgagttaagggttaacttggttctttctggccactgccagg
cagctttgcccatgtgatttatcattagagcttcacagaaaaatgcatgt
agttgggcctcagagctcttgagttctgaagtataataagccaaaagttt
aaataagtttacattattattttgggccatgggcctgggattagtggaag
cttgaaacttggagaacatgtgattctacttctttgtgagatgtatcatc
tttgatttgatctggcatgatatacatactttttctactgcttttgagta
taataaagactgggcagtaagacaggagagagtgtgagaagagtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6254571_6255561
seq2: B6Ng01-160I07.b_205_1193

seq1  TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCAAGATGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCAAGATGTCTC  50

seq1  TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA  100

seq1  CTACTCAGCAATTAAAAACAATGAATTTATGAAATTCTTGGGCAAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGCAATTAAAAACAATGAATTTATGAAATTCTTGGGCAAATGGA  150

seq1  TGTATCTGGAAGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGGAAGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAC  200

seq1  ACACTTGATATGCATTCACTGCTAAGTAGATGTTAGCCCAGAAAGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGATATGCATTCACTGCTAAGTAGATGTTAGCCCAGAAAGGATAT  250

seq1  ATTTCATCTTATGCCTTACAGTCTGTCACAGCGGGAACTCGGGGCAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTTATGCCTTACAGTCTGTCACAGCGGGAACTCGGGGCAGTAA  300

seq1  CTACAGCAGTGACCCTGGAAGACCACTGCTTACAAGCTGTTCTCCATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGTGACCCTGGAAGACCACTGCTTACAAGCTGTTCTCCATGGC  350

seq1  TTGTTCAGTTTGTTTTCTTATATAAACCAAGATCACCTGCTCAGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTTTGTTTTCTTATATAAACCAAGATCACCTGCTCAGGGGTGG  400

seq1  TACCACCTGTACCACCCACAATGGCTAGGCCTTCCACATCAACCATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTGTACCACCCACAATGGCTAGGCCTTCCACATCAACCATTAAT  450

seq1  CAGGAAAATACACACACAGCCTGCATAGTCTGGTAACGAGGCGTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATACACACACAGCCTGCATAGTCTGGTAACGAGGCGTATTTCT  500

seq1  GTGTGCTTACTTCTACATCCGTGATTTTGGTCTGGTTTAACTACTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTACTTCTACATCCGTGATTTTGGTCTGGTTTAACTACTGCTAA  550

seq1  TCTATATGGCAAATGCCTGAATGACTATGAGCACCTAACAGGCTCCGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGGCAAATGCCTGAATGACTATGAGCACCTAACAGGCTCCGAAT  600

seq1  GCTTGATGAGAGAGTCAACCGCAATGTGAAACTGCCAACAAAGTGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATGAGAGAGTCAACCGCAATGTGAAACTGCCAACAAAGTGGCCAG  650

seq1  TCTCTGCGGTAAGCTCTTAGATTTGGGTTGTGGGGCAGTGCCTGGAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCGGTAAGCTCTTAGATTTGGGTTGTGGGGCAGTGCCTGGAACCA  700

seq1  GAGTCCTCCATGTCCATAAAGTCCTTCAAGAAAAGACCTAAGGCTAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCCATGTCCATAAAGTCCTTCAAGAAAAGACCTAAGGCTAGCCA  750

seq1  AGAACAATTTATCCAGGTAAAGCCTTAAAAGCATCA-TTTTTCTATTTTA  799
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AGAACAATTTATCCAGGTAAAGCCTT-AAAGCATCATTTTTTCTATTTTA  799

seq1  CCTAGTATTTGAGTAAGTAAGACTCTTGAGTTACTTA-GCCTATAATCTC  848
      |||||||||||||||||| |||||||||||||||||| |||||| |||||
seq2  CCTAGTATTTGAGTAAGT-AGACTCTTGAGTTACTTAGGCCTAT-ATCTC  847

seq1  ACAAGAGATTTACAGTTTGAATTATATTAATATTTTAACTC--TCACGCG  896
      || ||||||||||||||||||||||||||||| ||||||||   | ||||
seq2  AC-AGAGATTTACAGTTTGAATTATATTAATA-TTTAACTCCTCCCCGCG  895

seq1  TATCT--GTCTTCCCAGGATGTATCATG--CTTGAAAACAGAGCTTTA-T  941
      |||||   |||||||||||   ||||||  |||| ||||||||||||| |
seq2  TATCTTGTTCTTCCCAGGA--GATCATGGCCTTG-AAACAGAGCTTTATT  942

seq1  TTTTGATATGGACTGAACCCAGGGTCTCGTCAATGCTAAGCCAGTGCTCT  991
      ||||||||| ||||| |||||||  || |||||||||||||||| |||||
seq2  TTTTGATAT-GACTG-ACCCAGGTCCTGGTCAATGCTAAGCCAG-GCTCT  989


seq1: chr4_6397590_6398562
seq2: B6Ng01-160I07.g_65_1012 (reverse)

seq1  CTCCACCTCTCTCCTCACACTCTCTCCTTGTCTTTAACTTGCCCCAGTCT  50
      |||||   |||| |||||||||||||| ||||||  |||   ||||||| 
seq2  CTCCA---CTCTTCTCACACTCTCTCC-TGTCTT--ACT--GCCCAGTC-  41

seq1  TTTATTATTACTCCAAAAGCAGGTAGGAAAAAAGTTATTGTATAATCATT  100
      ||||||| |||| |||||||| ||||  |||||||   ||||| |||| |
seq2  TTTATTA-TACT-CAAAAGCA-GTAG--AAAAAGT--ATGTAT-ATCA-T  82

seq1  GCCAGATCAAATTCAAAAGAATGATTACATCTCACAAAGAAGTAAGAATC  150
      ||||||||||| |||||   |||| |||||||||||||||||| ||||||
seq2  GCCAGATCAAA-TCAAA--GATGA-TACATCTCACAAAGAAGT-AGAATC  127

seq1  ACAATTGTTCTCCAAAGTTTCAAGCTTCCACTAATCCCAGGCCCATGG-C  199
      |||  |||||||| |||||||||||||||||||||||||||||||||| |
seq2  ACA--TGTTCTCC-AAGTTTCAAGCTTCCACTAATCCCAGGCCCATGGCC  174

seq1  CAAAATAATAATTGTAAACTTATTTAAACTTTTGGCTTATTATACTTCAG  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATAA-TGTAAACTTATTTAAACTTTTGGCTTATTATACTTCAG  223

seq1  AACTCAAGAGCTCTGAGG-CCAACTACATGCATTTTTCTGTGAAGCTCTA  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACTCAAGAGCTCTGAGGCCCAACTACATGCATTTTTCTGTGAAGCTCTA  273

seq1  ATGATAAATCACATGGGCAAAGCTGCCTGGCAGTGGCCAGAAAGAACCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAATCACATGGGCAAAGCTGCCTGGCAGTGGCCAGAAAGAACCAA  323

seq1  GTTAACCCTTAACTCAGCAGTTCCGCTAGCTTTCTGCTTCTGCACATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCCTTAACTCAGCAGTTCCGCTAGCTTTCTGCTTCTGCACATTGC  373

seq1  ACACAATGACTCTCCTAAGAGTCCCAGTGTTTTGACTTAGTTTTACTAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGACTCTCCTAAGAGTCCCAGTGTTTTGACTTAGTTTTACTAGT  423

seq1  ATATAATTTTCTGCATTCTATATTTTATTATCTATACATTTCCAAAGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTTCTGCATTCTATATTTTATTATCTATACATTTCCAAAGGAG  473

seq1  AGCAGGAACCACTGTCAAATGTGTAAAACTTATTTCATAAATTCAATAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACCACTGTCAAATGTGTAAAACTTATTTCATAAATTCAATAGC  523

seq1  TTTTATTTCTCGGGGTCATAATATTGGCTCTGCTTCATTTTCTTAATTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTCGGGGTCATAATATTGGCTCTGCTTCATTTTCTTAATTTA  573

seq1  TTTCTAAACATAATTTCTTCAAACTTTTCTTTGTTAGTCAAGCATTAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACATAATTTCTTCAAACTTTTCTTTGTTAGTCAAGCATTAATT  623

seq1  TGGAACTACCATTGTACAGTTATTGCATTGTTTCTGAGATGAGAACTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTACCATTGTACAGTTATTGCATTGTTTCTGAGATGAGAACTCAT  673

seq1  AGCATGTACCTGGACCATTAGGACTATGCTGCGCTGTGCCCCTATGCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTACCTGGACCATTAGGACTATGCTGCGCTGTGCCCCTATGCCCC  723

seq1  AATTTTTGATTGTTTAAGAATCATTACATCCCCAACACTTGGGAGGCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGATTGTTTAAGAATCATTACATCCCCAACACTTGGGAGGCAGA  773

seq1  GGCAGGTGGATTTCTGAGTTCGAAGCCAGCCTGGTCTACAAAGTGAGTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGATTTCTGAGTTCGAAGCCAGCCTGGTCTACAAAGTGAGTTC  823

seq1  CAGGACAGCCAGCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAA  873

seq1  AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAACAAACAAAAAAAATCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAACAAACAAAAAAAATCAT  923

seq1  TACATCAAGGAACATCACAGAATTC  973
      |||||||||||||||||||||||||
seq2  TACATCAAGGAACATCACAGAATTC  948


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