BAC Information

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BAC

Clone NameB6Ng01-160N01
Chromosome4 (Build37)
Map Location 52,659,851 - 52,814,070
singlet/doubletdoublet
Overlap geneLOC100040908
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N01.bB6Ng01-160N01.g
ACCDH954090DH954091
length1,121922
definitionDH954090|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N01, 5' end.DH954091|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,659,851 - 52,660,988)(52,813,381 - 52,814,070)
sequence
gaattcaaagtcaagttgttagcttaaagtcagctaaagaagtaagcctg
caccaccgagtcaacttaccatcaagctaccgacacgaggctctgaaaac
tggctgtgttactgtatagatgggagagcttcaaagtaagtaggtcacat
tatatccatagtaaaaacaggcacttgtatatattacttggagttataaa
taaaccagtataagaattaagtagctaggaataacaaaagtagggagatg
ttgaatatattacatgcatacttttcttaggcacaatcttcagttatcta
aaacagattagtccagaagatagatttcagcatatttttaaaataactat
gctaaaatatctgttcatttaatattgattcagctcttgctctgtgcata
tgttactttaacacagctaagattacaaaaataaacacacatgaactgtc
atagtgaatatgaataaataatttgtgaatttaaatttacgaaaaaattg
tagacatttgttaggtgtgtgtagtgttcattttttagcagtttctacat
taattagtttctgtgaaatcttgctaatgtccctattaagtaaatagtat
acaagagcccctttaaaaattaaagggagaaaggaagggtacatttgttg
cacagcctaaagtattatttgttcatatactaactttgcaacaatgtcag
gatctcttcgttaaactgaagagtgagatatgggtggagagaaaagagta
ttactctttgactacgcttgcttagccacaggtgggcaagcagattgacc
tgtccatccaagccaagtaattcttcactcgttcactctttgtttatgac
tttatttcttcatccttggcagaacagaaagtaaatcatggcatttcttg
gctgaaaggcagagtgaagcagctgtgacccttgagatattgtttacttt
actgctctgctacccactcagtcactttcgttggacgtgctgatgacttc
acacggtggctgttcttctgctccatcatggatggagagagcagcagtgc
ttgctttaggcacatttatagtcattcataacattatgagggacctctgt
ctgcgataacacagcagctgc
gaattccatactgatttattttgaatgaccaaaaggataaagctttttgg
agatagaggaatgtctcaaggtaagagtagcatcacagaatcacataggc
tgctctttcattccatctaagcacagaagattgacaaaggcctatgggtg
ccagagcttgcttactgggtcaaagccacctgatatggttggggccacaa
ggaataaaaccaggacagttggaaggcccacaggaaaacttaacattggt
aattttattgagaacaatcagactttttataccttaagctgaaacagaat
acagtggcaattgccagaatcaatacagttgcagttgtcaggactcaatg
atgtttgcaaactttacagggtatagagaattcatgtctaagaacaattg
tcctgtcaggcttccatgtttccttcacttccaaggaaacatacagagat
acatgaagtagcctgttggattagagttttcaaaaccttctttaatcagg
gttctgaaatactttgactcccattttagccaccatccaaaggtagggga
gaaaagatgataaataggacaagggtttgtggacctgtttagaagtagat
ctttggggtaattctaatcttcattgtcaggataccaacagttcagttca
ccaaacacggatcagcaccggtggcacaacccagcagaaattgccaggcc
tccaccgaattggcacaaatcagcaagagcaaccaccagtaggaatacca
gcatttatcaatgaattaaagatcagcaaagaagcaagaccatcgaagca
aagcaagctcaacatcactatcagttgagtcctacttatactctctccaa
acatcacagtctacttcagcaaaacactacacaagtctgctttagcaaga
catcacatgactctgctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52659851_52660988
seq2: B6Ng01-160N01.b_41_1161

seq1  GAATTCAAAGTCAAGTTGTTAGCTTAAAGTCAGCTAAAGAAGTAAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCAAGTTGTTAGCTTAAAGTCAGCTAAAGAAGTAAGCCTG  50

seq1  CACCACCGAGTCAACTTACCATCAAGCTACCGACACGAGGCTCTGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCGAGTCAACTTACCATCAAGCTACCGACACGAGGCTCTGAAAAC  100

seq1  TGGCTGTGTTACTGTATAGATGGGAGAGCTTCAAAGTAAGTAGGTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTTACTGTATAGATGGGAGAGCTTCAAAGTAAGTAGGTCACAT  150

seq1  TATATCCATAGTAAAAACAGGCACTTGTATATATTACTTGGAGTTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCATAGTAAAAACAGGCACTTGTATATATTACTTGGAGTTATAAA  200

seq1  TAAACCAGTATAAGAATTAAGTAGCTAGGAATAACAAAAGTAGGGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTATAAGAATTAAGTAGCTAGGAATAACAAAAGTAGGGAGATG  250

seq1  TTGAATATATTACATGCATACTTTTCTTAGGCACAATCTTCAGTTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATATTACATGCATACTTTTCTTAGGCACAATCTTCAGTTATCTA  300

seq1  AAACAGATTAGTCCAGAAGATAGATTTCAGCATATTTTTAAAATAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTAGTCCAGAAGATAGATTTCAGCATATTTTTAAAATAACTAT  350

seq1  GCTAAAATATCTGTTCATTTAATATTGATTCAGCTCTTGCTCTGTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATATCTGTTCATTTAATATTGATTCAGCTCTTGCTCTGTGCATA  400

seq1  TGTTACTTTAACACAGCTAAGATTACAAAAATAAACACACATGAACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTTAACACAGCTAAGATTACAAAAATAAACACACATGAACTGTC  450

seq1  ATAGTGAATATGAATAAATAATTTGTGAATTTAAATTTACGAAAAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAATATGAATAAATAATTTGTGAATTTAAATTTACGAAAAAATTG  500

seq1  TAGACATTTGTTAGGTGTGTGTAGTGTTCATTTTTTAGCAGTTTCTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTGTTAGGTGTGTGTAGTGTTCATTTTTTAGCAGTTTCTACAT  550

seq1  TAATTAGTTTCTGTGAAATCTTGCTAATGTCCCTATTAAGTAAATAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTTCTGTGAAATCTTGCTAATGTCCCTATTAAGTAAATAGTAT  600

seq1  ACAAGAGCCCCTTTAAAAATTAAAGGGAGAAAGGAAGGGTACATTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCCCCTTTAAAAATTAAAGGGAGAAAGGAAGGGTACATTTGTTG  650

seq1  CACAGCCTAAAGTATTATTTGTTCATATACTAACTTTGCAACAATGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTAAAGTATTATTTGTTCATATACTAACTTTGCAACAATGTCAG  700

seq1  GATCTCTTCGTTAAACTGAAGAGTGAGATATGGGTGGAGAGAAAAGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTCGTTAAACTGAAGAGTGAGATATGGGTGGAGAGAAAAGAGTA  750

seq1  TTACTCTTTGACTACGCTTGCTTAGCCACAGGTGGGCAAGCAGATTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTGACTACGCTTGCTTAGCCACAGGTGGGCAAGCAGATTGACC  800

seq1  TGTCCATCCAAGCCAAGTAATTCTTCACTCGTTCACTCTTTGTTTATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCCAAGCCAAGTAATTCTTCACTCGTTCACTCTTTGTTTATGAC  850

seq1  TTTATTTCTTCATCCTTGGCAAGAACAGAAAGTAAATCATGGCATTTCTT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTATTTCTTCATCCTTGGC-AGAACAGAAAGTAAATCATGGCATTTCTT  899

seq1  GGCTGAAAGGCAGAGTGAAGCAGCTGTGACCCTTGAGATATTGTTTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGGCAGAGTGAAGCAGCTGTGACCCTTGAGATATTGTTTACTT  949

seq1  TACTGCCTCCTGCTACCCACTCAGTCACTTTCGTTGGACGTGCTTGATGA  1000
      ||||||   |||||||||||||||||||||||||||||||||| ||||||
seq2  TACTGC--TCTGCTACCCACTCAGTCACTTTCGTTGGACGTGC-TGATGA  996

seq1  CTTCACACGGTTGGCTGTTCCTTCTGCTCCATCAATTGATGGAGAGAGGC  1050
      |||||||||| |||||||| ||||||||||||| || |||||||||| ||
seq2  CTTCACACGG-TGGCTGTT-CTTCTGCTCCATC-ATGGATGGAGAGA-GC  1042

seq1  AGGCAGTGGCTGCTTTAAGCCACATTTATTAGTTCATTCATTAACAATTT  1100
      | ||||||  |||||| || |||||||| ||| ||||||| |||||  ||
seq2  A-GCAGTGCTTGCTTT-AGGCACATTTA-TAG-TCATTCA-TAACA--TT  1085

seq1  ATGA-GGACCTACAGTCTGCCAGATAACACAGCAGCTGC  1138
      |||| |||||| | ||||||  |||||||||||||||||
seq2  ATGAGGGACCT-CTGTCTGC--GATAACACAGCAGCTGC  1121

seq1: chr4_52813381_52814070
seq2: B6Ng01-160N01.g_67_756 (reverse)

seq1  TTTCTGCTGGGTTGTGCCACCGGTGCTGATCCGTGTTTGGTGAACTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGGGTTGTGCCACCGGTGCTGATCCGTGTTTGGTGAACTGAAC  50

seq1  TGTTGGTATCCTGACAATGAAGATTAGAATTACCCCAAAGATCTACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTATCCTGACAATGAAGATTAGAATTACCCCAAAGATCTACTTCT  100

seq1  AAACAGGTCCACAAACCCTTGTCCTATTTATCATCTTTTCTCCCCTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTCCACAAACCCTTGTCCTATTTATCATCTTTTCTCCCCTACCT  150

seq1  TTGGATGGTGGCTAAAATGGGAGTCAAAGTATTTCAGAACCCTGATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGTGGCTAAAATGGGAGTCAAAGTATTTCAGAACCCTGATTAAA  200

seq1  GAAGGTTTTGAAAACTCTAATCCAACAGGCTACTTCATGTATCTCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTGAAAACTCTAATCCAACAGGCTACTTCATGTATCTCTGTAT  250

seq1  GTTTCCTTGGAAGTGAAGGAAACATGGAAGCCTGACAGGACAATTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTGGAAGTGAAGGAAACATGGAAGCCTGACAGGACAATTGTTCT  300

seq1  TAGACATGAATTCTCTATACCCTGTAAAGTTTGCAAACATCATTGAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGAATTCTCTATACCCTGTAAAGTTTGCAAACATCATTGAGTCC  350

seq1  TGACAACTGCAACTGTATTGATTCTGGCAATTGCCACTGTATTCTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGCAACTGTATTGATTCTGGCAATTGCCACTGTATTCTGTTTC  400

seq1  AGCTTAAGGTATAAAAAGTCTGATTGTTCTCAATAAAATTACCAATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAGGTATAAAAAGTCTGATTGTTCTCAATAAAATTACCAATGTTA  450

seq1  AGTTTTCCTGTGGGCCTTCCAACTGTCCTGGTTTTATTCCTTGTGGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTGTGGGCCTTCCAACTGTCCTGGTTTTATTCCTTGTGGCCCC  500

seq1  AACCATATCAGGTGGCTTTGACCCAGTAAGCAAGCTCTGGCACCCATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATCAGGTGGCTTTGACCCAGTAAGCAAGCTCTGGCACCCATAGG  550

seq1  CCTTTGTCAATCTTCTGTGCTTAGATGGAATGAAAGAGCAGCCTATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCAATCTTCTGTGCTTAGATGGAATGAAAGAGCAGCCTATGTGA  600

seq1  TTCTGTGATGCTACTCTTACCTTGAGACATTCCTCTATCTCCAAAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATGCTACTCTTACCTTGAGACATTCCTCTATCTCCAAAAAGCT  650

seq1  TTATCCTTTTGGTCATTCAAAATAAATCAGTATGGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTTTGGTCATTCAAAATAAATCAGTATGGAATTC  690