BAC Information

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BAC

Clone NameB6Ng01-161C05
Chromosome4 (Build37)
Map Location 137,074,051 - 137,218,584
singlet/doubletdoublet
Overlap geneHspg2, Ldlrad2, Usp48
Upstream geneLuzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik
Downstream geneRap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161C05.bB6Ng01-161C05.g
ACCDH954335DH954336
length1,119965
definitionDH954335|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C05, 5' end.DH954336|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,074,051 - 137,075,195)(137,217,610 - 137,218,584)
sequence
gaattctatcagcttggtgtgtttcaaatctaaacttatctgtgagcctc
ctagtggccaatgagaaaagggaaactggtttcattaagcaccacaatct
aatgaccgagatgcctcgcatatatgtatgtgcgctttccatggctctcc
gggacacccccgtctagactcgggggtagattcaactgctggttccaggc
agctcctcccgtgggccatcctgcagctcccatctctgtgtccacagaac
aatgtagtggggcgcttgtgcaacgagtgctcggacggctcgttccacct
gagcaagcaaaacccggacggctgcctcaagtgcttctgcatgggagtta
gtcgccagtgcagcagctcctcctggagccgcgcccaggtaccggcaaga
gggcggcagctggatgggacagccgggacagagggcgggggcaacaccgc
caccgccaccaccacccctgcccgatctgaacattctccatctccaggtg
ctcggggcctcggaacagccctctcagttcagcctgagcaacgccgccgg
cacccacaccaccagcgagggggtctcgtcccctgcacccggggagctgt
cgttctcttccttccacaacctcctgtctgaaccctacttctggagtctt
cccgccagcttccgaggggacaaggtgcgcaggacagaggaacaacacag
gcaggaagggcattgggaggatagagacagcgtggcccgactgaagtctc
ccgctcaaagcctgtccacccctgttccaggtgacgtcctacggcggaga
gctgcgcttcactgtgacgcagaggccccggcccagttctgcgcccctgc
acagacagcccctggtggtgttgcaggcaacaacattgtgttggagcatc
atgcctcgagggatcccagccctggccagcccagcaacttcatagtgccc
ttcagagtgagccctcccatccctcttgtctcacttggggctcagcccca
ggtgtcagatggatctcatgtcactccctaagcaagcgtggcagcgctga
tgggcagcggcacacggagcacctgctgagggccctgcagcattgatgcc
ctccctatcaagcatctta
gaattctttatgtagaccaaccaggttggtcttgaactcagagtcatctg
cctcttcctcttgaatgctggaaatatttttctatctatctatctatcta
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatttattttggttttccgagacagggtatctctgtgtagccctggctgt
cctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcc
tgcctctgcctcccgggtgctgggattaaaggcgtgcgccaccactgccc
ggccatgtccagcttaaaaaacaaaacaaacaaccaggtcctaaaatgta
gtcagtgggagagcacttggctggcacgtgcaaggtctggggtttggtgt
tcagtactgaggtgaggacagagctagttgggagaccttagggtcactcc
ccatcaccacacaaaccaggcatggcctgtgatcagatctcagcacctag
gaggtagaggaaggagatctcaaagccatccttcatgcatagattgagac
cgtttcaaaagacaaaaacaaaacaaaaaacccaccccaaactaaaagct
cggctgcactgccgtgggtctttgtccttctgtgatctggacccataggt
tttaagctcaggggccatggcgcttatgtgcacgggggaactgaacatgc
ctgacactggtaaagaatgaaggcttttctgttccaggtctgcttcttta
gaaccaaggagactttcattacagcctttccttctttatagaaagcctct
tcaatgagaggtttataatctcttgtgggtcctggaaggcgcatttctga
gccagcaaggcccccggggaggcggcaacgcgtgctatgagggggctggt
gcacagcctgccatggatggaagaaaggtggacaaaggcctagagtttct
ttctcttgcctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_137074051_137075195
seq2: B6Ng01-161C05.b_45_1163

seq1  GAATTCTATCAGCTTGGTGTGTTTCAAATCTAAACTTATCTGTGAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAGCTTGGTGTGTTTCAAATCTAAACTTATCTGTGAGCCTC  50

seq1  CTAGTGGCCAATGAGAAAAGGGAAACTGGTTTCATTAAGCACCACAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCCAATGAGAAAAGGGAAACTGGTTTCATTAAGCACCACAATCT  100

seq1  AATGACCGAGATGCCTCGCATATATGTATGTGCGCTTTCCATGGCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCGAGATGCCTCGCATATATGTATGTGCGCTTTCCATGGCTCTCC  150

seq1  GGGACACCCCCGTCTAGACTCGGGGGTAGATTCAACTGCTGGTTCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACCCCCGTCTAGACTCGGGGGTAGATTCAACTGCTGGTTCCAGGC  200

seq1  AGCTCCTCCCGTGGGCCATCCTGCAGCTCCCATCTCTGTGTCCACAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCCGTGGGCCATCCTGCAGCTCCCATCTCTGTGTCCACAGAAC  250

seq1  AATGTAGTGGGGCGCTTGTGCAACGAGTGCTCGGACGGCTCGTTCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTGGGGCGCTTGTGCAACGAGTGCTCGGACGGCTCGTTCCACCT  300

seq1  GAGCAAGCAAAACCCGGACGGCTGCCTCAAGTGCTTCTGCATGGGAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCAAAACCCGGACGGCTGCCTCAAGTGCTTCTGCATGGGAGTTA  350

seq1  GTCGCCAGTGCAGCAGCTCCTCCTGGAGCCGCGCCCAGGTACCGGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCAGTGCAGCAGCTCCTCCTGGAGCCGCGCCCAGGTACCGGCAAGA  400

seq1  GGGCGGCAGCTGGATGGGACAGCCGGGACAGAGGGCGGGGGCAACACCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCAGCTGGATGGGACAGCCGGGACAGAGGGCGGGGGCAACACCGC  450

seq1  CACCGCCACCACCACCCCTGCCCGATCTGAACATTCTCCATCTCCAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCACCACCACCCCTGCCCGATCTGAACATTCTCCATCTCCAGGTG  500

seq1  CTCGGGGCCTCGGAACAGCCCTCTCAGTTCAGCCTGAGCAACGCCGCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGCCTCGGAACAGCCCTCTCAGTTCAGCCTGAGCAACGCCGCCGG  550

seq1  CACCCACACCACCAGCGAGGGGGTCTCGTCCCCTGCACCCGGGGAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACCACCAGCGAGGGGGTCTCGTCCCCTGCACCCGGGGAGCTGT  600

seq1  CGTTCTCTTCCTTCCACAACCTCCTGTCTGAACCCTACTTCTGGAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTTCCTTCCACAACCTCCTGTCTGAACCCTACTTCTGGAGTCTT  650

seq1  CCCGCCAGCTTCCGAGGGGACAAGGTGCGCAGGACAGAGGAACAACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAGCTTCCGAGGGGACAAGGTGCGCAGGACAGAGGAACAACACAG  700

seq1  GCAGGAAGGGCATTGGGAGGATAGAGACAGCGTGGCCCGACTGAAGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGGGCATTGGGAGGATAGAGACAGCGTGGCCCGACTGAAGTCTC  750

seq1  CCGCTCAAAGCCTGTCCACCCCTGTTCCAGGTGACGTCCTACGGCGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCAAAGCCTGTCCACCCCTGTTCCAGGTGACGTCCTACGGCGGAGA  800

seq1  GCTGCGCTTCACTGTGACGCAGAGGCCCCGGCCCAGTTCTGCGCCCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCTTCACTGTGACGCAGAGGCCCCGGCCCAGTTCTGCGCCCCTGC  850

seq1  ACAGACAGCCCCTGGTGGTGTTGCAGGGCAACAACATTGTGTTGGAGCAT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGACAGCCCCTGGTGGTGTTGCA-GGCAACAACATTGTGTTGGAGCAT  899

seq1  CATGCCTCGAGGGATCCCAGCCCTGGCCAGCCCAGCAACTTCATAGTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCGAGGGATCCCAGCCCTGGCCAGCCCAGCAACTTCATAGTGCC  949

seq1  CTTCCAAGAGGTGAGCCCCTCCCATCCCTTCTTGTTCCTCACTTTGGGGG  1000
      ||||  ||| ||||| |||||||||||| ||||||  |||||||   |||
seq2  CTTC--AGA-GTGAG-CCCTCCCATCCC-TCTTGT--CTCACTT---GGG  989

seq1  CCTCAGCCCCCAGGGTGTCAGGAATGGATCTCATGTCACTTCCCTTACAG  1050
       |||||||||   ||||||||  |||||||||||||||| |||||   ||
seq2  GCTCAGCCCC--AGGTGTCAG--ATGGATCTCATGTCAC-TCCCT--AAG  1032

seq1  CAAGCGTGGCAGCGGCCTGATGGGCAGCCGGCCACACGGGAGCACCTGCT  1100
      ||||||||||||||  ||||||||||||  | ||||| ||||||||||||
seq2  CAAGCGTGGCAGCG--CTGATGGGCAGC--GGCACAC-GGAGCACCTGCT  1077

seq1  GATGGCCCTGGCAGGCATTGATGCCCTCCTCATCCAAGCATCTTA  1145
      || |||||| ||| |||||||||||||||  || |||||||||||
seq2  GAGGGCCCT-GCA-GCATTGATGCCCTCCCTAT-CAAGCATCTTA  1119

seq1: chr4_137217610_137218584
seq2: B6Ng01-161C05.g_68_1032 (reverse)

seq1  AAATAGGCCAGAGAAAGCAAAGCTCTAGGGCCTTTGTCCAACCTTCTCTT  50
      |||||||| ||||||||  || ||||| ||||||||||| ||||| ||||
seq2  AAATAGGCAAGAGAAAG--AAACTCTA-GGCCTTTGTCC-ACCTT-TCTT  45

seq1  CCATCCATGCCAGGCTGTGCACCCAGCCCCCCTCATAGGCACGCGTTGCC  100
      ||||||||| ||||||||||| |||| |||||||||| ||||||||||||
seq2  CCATCCATGGCAGGCTGTGCA-CCAG-CCCCCTCATA-GCACGCGTTGCC  92

seq1  GCCTCCCCGGGGGCCCTTGCTGGCTCAGAATGGCGCCCTCCAGGACCCAC  150
      ||||||||||||| ||||||||||||||||  ||||| ||||||||||||
seq2  GCCTCCCCGGGGG-CCTTGCTGGCTCAGAAATGCGCCTTCCAGGACCCAC  141

seq1  AAGAGATTATAAACCTCTCATTGAAGAGGCTTTCTATAAAGAGGAAAAGG  200
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  AAGAGATTATAAACCTCTCATTGAAGAGGCTTTCTATAAAGAAGGAAAGG  191

seq1  CTGTAATTGAAAGTCTCCTTGGTTCTAAAGAAGCAGACCTGGAACAGAAA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAA-TGAAAGTCTCCTTGGTTCTAAAGAAGCAGACCTGGAACAGAAA  240

seq1  AGCCTTCATTCTTTACCAGTGTCAGGCATGTTCAGTTCCCCCGTGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCATTCTTTACCAGTGTCAGGCATGTTCAGTTCCCCCGTGCACAT  290

seq1  AAGCGCCATGGCCCCTGAGCTTAAAACCTATGGGTCCAGATCACAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCCATGGCCCCTGAGCTTAAAACCTATGGGTCCAGATCACAGAAGG  340

seq1  ACAAAGACCCACGGCAGTGCAGCCGAGCTTTTAGTTTGGGGTGGGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCCACGGCAGTGCAGCCGAGCTTTTAGTTTGGGGTGGGTTTTT  390

seq1  TGTTTTGTTTTTGTCTTTTGAAACGGTCTCAATCTATGCATGAAGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTGTCTTTTGAAACGGTCTCAATCTATGCATGAAGGATGG  440

seq1  CTTTGAGATCTCCTTCCTCTACCTCCTAGGTGCTGAGATCTGATCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATCTCCTTCCTCTACCTCCTAGGTGCTGAGATCTGATCACAGG  490

seq1  CCATGCCTGGTTTGTGTGGTGATGGGGAGTGACCCTAAGGTCTCCCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGGTTTGTGTGGTGATGGGGAGTGACCCTAAGGTCTCCCAACT  540

seq1  AGCTCTGTCCTCACCTCAGTACTGAACACCAAACCCCAGACCTTGCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTCCTCACCTCAGTACTGAACACCAAACCCCAGACCTTGCACGT  590

seq1  GCCAGCCAAGTGCTCTCCCACTGACTACATTTTAGGACCTGGTTGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAAGTGCTCTCCCACTGACTACATTTTAGGACCTGGTTGTTTGT  640

seq1  TTTGTTTTTTAAGCTGGACATGGCCGGGCAGTGGTGGCGCACGCCTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTAAGCTGGACATGGCCGGGCAGTGGTGGCGCACGCCTTTAA  690

seq1  TCCCAGCACCCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAG  740

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGATACC  790

seq1  CTGTCTCGGAAAACCAAAATAAATAGATAGATAGATAGATAGATAGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGGAAAACCAAAATAAATAGATAGATAGATAGATAGATAGATAG  840

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAAAT  890

seq1  ATTTCCAGCATTCAAGAGGAAGAGGCAGATGACTCTGAGTTCAAGACCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCATTCAAGAGGAAGAGGCAGATGACTCTGAGTTCAAGACCAA  940

seq1  CCTGGTTGGTCTACATAAAGAATTC  975
      |||||||||||||||||||||||||
seq2  CCTGGTTGGTCTACATAAAGAATTC  965