BAC Information

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BAC

Clone NameB6Ng01-161J01
Chromosome4 (Build37)
Map Location 62,396,595 - 62,513,320
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161J01.bB6Ng01-161J01.g
ACCDH954644DH954645
length1,142808
definitionDH954644|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J01, 5' end.DH954645|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,512,177 - 62,513,320)(62,396,595 - 62,397,397)
sequence
gaattcctgtgcaagtgtatgtgtgtgctgtgcatctggatggtagaggt
tgaggtctggtgtctgctacagtaactctgctttacttactaaagaaggg
tctcttgctgaatctagagctcactgctgctctagttaccctgcttcctg
gaacccctctgtctctgcctcccaagcagtgtgctaccagtgggcagatg
cacttccctggctggtgatgtgggtgctggagtctgaattcagatcttca
cagtgtgaagctagccagtgccctagctctgccagctctttctctatacc
tggcaaagttaaccggggatgagctgcaacctgtgaaggttggttttgta
tgttattccagaaggggccatcactggcagcctgaagtcactcccaggga
tactatggggtgaaggggaatcctgactggggcacagaaagagaactcag
cgctgacggctgtgctgagtctggtccacagatgttctgtttggctcagc
caatgttttcaaagaattgagccaacgtttaataattgggacattttaaa
ttttaaaaatgccgatttctggcttgtcttgaaaaaaaatcaggaagact
gacaggcccagatctgcactgtcccatggcaacaataaactaaactaaac
cttcagatggggtatgcacgccctgatgtacctcagaccccaccctccct
attgtctcaagagcctgaggcaaatacaatcaccattctcttctatgctg
gcagggttgtgctcctgtagtggtgaaaactgagtttaggatcgtgcaag
tttccttaccattgacacacttctgtcctggacccctccgggcgtcttgt
gttatgagtgtaattgggctgagttattacttatattagagcatcctttc
ctaattgactgccagccacatcccagggtgcacacatagtgttgatgctg
ttgatgcaggcatattgtggtgcctgctgagggggctcccaccagggttg
gaaagaaggactggagtattatgagtgactgagcctgttctggaaaacag
atgaccatgccactctccatattacatggtgagcgatttctcatctctgt
gggcttcagtccatcgctgaactccagaatttagatttagtg
gaattcacggagagagggaggtccccatagggtgtggctgagactgatcc
acggtcatgctagggacagggctccgcttgcctcaactcggcatgactgt
tctgttttcttggcagctgtgccaaggatgaggatggcaggcctgtcccc
tccctcagccattccatctcagctctcctgtttattgacagctctggggg
tgggggaggtgtacacaccaaggctagtgttctcttcaggggttcactaa
tggatgcaggaacctgagacagggaaaccacatttatggcgtctctgggc
aactgatatctactatcctgcttttggatgctagcttaattgcgcccgtt
ttagaggggagaaaatgggctcagagaaaggcaggtgacacaccaatacg
gaagcagggctggaaacgccttaccagagcctggcatctcttctttaaag
gagctcagcaggaaggcaaacccaggccaggagacaggatatgcggcaag
atatgcttgttcctgcagcaagatatgcttttttcctgggagccatgtgg
taagaaggtcttggcagtcagtgcggaaagcactgtgttctcaagcccct
ttctgggtctcctctctttcacctcctaatatgggattggcctggtgccc
tctgtagccccctaagctctgtgtgagctgaaagggtccccggcgggctc
ggaggtctgaggcaaggagagccttgccagcagaggatttgctacctact
gctccagagcccccagctctgctcatgccacacaactgcccggcatctgg
aaagtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62512177_62513320
seq2: B6Ng01-161J01.b_45_1186 (reverse)

seq1  CACTAAA-CTAAATTCTTGAGTTTAGCGATGGGAACTGAAGCCCACAGGG  49
      ||||||| ||||||||| ||||| ||||||||  |||||||||||||| |
seq2  CACTAAATCTAAATTCTGGAGTTCAGCGATGG--ACTGAAGCCCACAGAG  48

seq1  ATGGAGAAATCGCTCA-CATGT-ATATGGAGAGTGGCCTGGTCATTCTGT  97
      || ||||||||||||| ||||| |||||||||||||| |||||| |||||
seq2  AT-GAGAAATCGCTCACCATGTAATATGGAGAGTGGCATGGTCA-TCTGT  96

seq1  TTTCCAGACCAGGGCTCAGTCACCTCATAATACCTCAGTCCTTTCTCTCC  147
      |||||||| || |||||||||| ||||||||||  |||||| |||| |||
seq2  TTTCCAGAACA-GGCTCAGTCA-CTCATAATACTCCAGTCC-TTCTTTCC  143

seq1  AACCCT-GTGTGAGCCCCCCTCAGCAGCCACAACAATATGCCTGCATCAA  196
      |||||| ||| ||| |||||||||||| ||| ||||||||||||||||||
seq2  AACCCTGGTGGGAG-CCCCCTCAGCAGGCACCACAATATGCCTGCATCAA  192

seq1  CAGCATCAACACTATGTGTGCA-CCTGGGATGTGGCTGGCAGTC-ATTAG  244
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  CAGCATCAACACTATGTGTGCACCCTGGGATGTGGCTGGCAGTCAATTAG  242

seq1  GAAAGGATGCTCTAATATAAGTAATAACTCAGCCCAATTACACTCATAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGCTCTAATATAAGTAATAACTCAGCCCAATTACACTCATAAC  292

seq1  ACAAGACGCCCGGAGGGGTCCAGGACAGAAGTGTGTCAATGGTAAGGAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACGCCCGGAGGGGTCCAGGACAGAAGTGTGTCAATGGTAAGGAAA  342

seq1  CTTGCACGATCCTAAACTCAGTTTTCACCACTACAGGAGCACAACCCTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACGATCCTAAACTCAGTTTTCACCACTACAGGAGCACAACCCTGC  392

seq1  CAGCATAGAAGAGAATGGTGATTGTATTTGCCTCAGGCTCTTGAGACAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGAAGAGAATGGTGATTGTATTTGCCTCAGGCTCTTGAGACAAT  442

seq1  AGGGAGGGTGGGGTCTGAGGTACATCAGGGCGTGCATACCCCATCTGAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGTGGGGTCTGAGGTACATCAGGGCGTGCATACCCCATCTGAAG  492

seq1  GTTTAGTTTAGTTTATTGTTGCCATGGGACAGTGCAGATCTGGGCCTGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTAGTTTATTGTTGCCATGGGACAGTGCAGATCTGGGCCTGTC  542

seq1  AGTCTTCCTGATTTTTTTTCAAGACAAGCCAGAAATCGGCATTTTTAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTGATTTTTTTTCAAGACAAGCCAGAAATCGGCATTTTTAAAA  592

seq1  TTTAAAATGTCCCAATTATTAAACGTTGGCTCAATTCTTTGAAAACATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTCCCAATTATTAAACGTTGGCTCAATTCTTTGAAAACATTG  642

seq1  GCTGAGCCAAACAGAACATCTGTGGACCAGACTCAGCACAGCCGTCAGCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCAAACAGAACATCTGTGGACCAGACTCAGCACAGCCGTCAGCG  692

seq1  CTGAGTTCTCTTTCTGTGCCCCAGTCAGGATTCCCCTTCACCCCATAGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTCTTTCTGTGCCCCAGTCAGGATTCCCCTTCACCCCATAGTA  742

seq1  TCCCTGGGAGTGACTTCAGGCTGCCAGTGATGGCCCCTTCTGGAATAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGAGTGACTTCAGGCTGCCAGTGATGGCCCCTTCTGGAATAACA  792

seq1  TACAAAACCAACCTTCACAGGTTGCAGCTCATCCCCGGTTAACTTTGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACCAACCTTCACAGGTTGCAGCTCATCCCCGGTTAACTTTGCCA  842

seq1  GGTATAGAGAAAGAGCTGGCAGAGCTAGGGCACTGGCTAGCTTCACACTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAGAAAGAGCTGGCAGAGCTAGGGCACTGGCTAGCTTCACACTG  892

seq1  TGAAGATCTGAATTCAGACTCCAGCACCCACATCACCAGCCAGGGAAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCTGAATTCAGACTCCAGCACCCACATCACCAGCCAGGGAAGTG  942

seq1  CATCTGCCCACTGGTAGCACACTGCTTGGGAGGCAGAGACAGAGGGGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCACTGGTAGCACACTGCTTGGGAGGCAGAGACAGAGGGGTTC  992

seq1  CAGGAAGCAGGGTAACTAGAGCAGCAGTGAGCTCTAGATTCAGCAAGAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCAGGGTAACTAGAGCAGCAGTGAGCTCTAGATTCAGCAAGAGA  1042

seq1  CCCTTCTTTAGTAAGTAAAGCAGAGTTACTGTAGCAGACACCAGACCTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTAGTAAGTAAAGCAGAGTTACTGTAGCAGACACCAGACCTCA  1092

seq1  ACCTCTACCATCCAGATGCACAGCACACACATACACTTGCACAGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACCATCCAGATGCACAGCACACACATACACTTGCACAGGAATTC  1142

seq1: chr4_62396595_62397397
seq2: B6Ng01-161J01.g_67_874

seq1  GAATTCACGGAGAGAGGGAGGTCCCCATAGGGTGTGGCTGAGACTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGAGAGAGGGAGGTCCCCATAGGGTGTGGCTGAGACTGATCC  50

seq1  ACGGTCATGCTAGGGACAGGGCTCCGCTTGCCTCAACTCGGCATGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCATGCTAGGGACAGGGCTCCGCTTGCCTCAACTCGGCATGACTGT  100

seq1  TCTGTTTTCTTGGCAGCTGTGCCAAGGATGAGGATGGCAGGCCTGTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTTGGCAGCTGTGCCAAGGATGAGGATGGCAGGCCTGTCCCC  150

seq1  TCCCTCAGCCATTCCATCTCAGCTCTCCTGTTTATTGACAGCTCTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGCCATTCCATCTCAGCTCTCCTGTTTATTGACAGCTCTGGGGG  200

seq1  TGGGGGAGGTGTACACACCAAGGCTAGTGTTCTCTTCAGGGGTTCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGTGTACACACCAAGGCTAGTGTTCTCTTCAGGGGTTCACTAA  250

seq1  TGGATGCAGGAACCTGAGACAGGGAAACCACATTTATGGCGTCTCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCAGGAACCTGAGACAGGGAAACCACATTTATGGCGTCTCTGGGC  300

seq1  AACTGATATCTACTATCCTGCTTTTGGATGCTAGCTTAATTGCGCCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATCTACTATCCTGCTTTTGGATGCTAGCTTAATTGCGCCCGTT  350

seq1  TTAGAGGGGAGAAAATGGGCTCAGAGAAAGGCAGGTGACACACCAATACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGGGAGAAAATGGGCTCAGAGAAAGGCAGGTGACACACCAATACG  400

seq1  GAAGCAGGGCTGGAAACGCCTTACCAGAGCCTGGCATCTCTTCTTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGCTGGAAACGCCTTACCAGAGCCTGGCATCTCTTCTTTAAAG  450

seq1  GAGCTCAGCAGGAAGGCAAACCCAGGCCAGGAGACAGGATATGCGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCAGGAAGGCAAACCCAGGCCAGGAGACAGGATATGCGGCAAG  500

seq1  ATATGCTTGTTCCTGCAGCAAGATATGC-TTGTTCCTGGGAGCCATGTGG  549
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  ATATGCTTGTTCCTGCAGCAAGATATGCTTTTTTCCTGGGAGCCATGTGG  550

seq1  TAAGAAGGTCTTGGCAGTCAGTGCGGAAAGCACTGTGTTCTCAAG-CCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGAAGGTCTTGGCAGTCAGTGCGGAAAGCACTGTGTTCTCAAGCCCCT  600

seq1  TTCTGGGTCTCCTCTCTTTCACCTCCTAATATGGGATTGGCCTGGTGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCTCCTCTCTTTCACCTCCTAATATGGGATTGGCCTGGTGCCC  650

seq1  TCTGTAG-CCCCTAAGCTCTGTGTGAGCTG-AAGGGTCCCCGGCGGGCTC  696
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGTAGCCCCCTAAGCTCTGTGTGAGCTGAAAGGGTCCCCGGCGGGCTC  700

seq1  GGAGGTCTGAGGC-AGGAGAGCCTTGCCAGCAGAGGA-TTGCTACCTACT  744
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  GGAGGTCTGAGGCAAGGAGAGCCTTGCCAGCAGAGGATTTGCTACCTACT  750

seq1  GCTCCAGAGCCCCCAGCTCTGCTCATGCCACACGAACTGCCCGGCATCTG  794
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTCCAGAGCCCCCAGCTCTGCTCATGCCACAC-AACTGCCCGGCATCTG  799

seq1  TAAAGTGGA  803
       ||||||||
seq2  GAAAGTGGA  808