BAC Information

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BAC

Clone NameB6Ng01-161P04
Chromosome4 (Build37)
Map Location 135,962,872 - 136,135,179
singlet/doubletdoublet
Overlap geneHtr1d, LOC100042540, Luzp1, Aof2
Upstream geneDscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
Downstream geneLOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P04.bB6Ng01-161P04.g
ACCDH954920DH954921
length761934
definitionDH954920|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P04, 5' end.DH954921|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,962,872 - 135,963,632)(136,134,243 - 136,135,179)
sequence
gaattcttgaggtggcaacctctcaatgagggtcagtcactcttttagat
caagagccagaaggctgtatatgttgaggaccgggttaggcatattctag
atgttgtcagtgatccagcggatgagtgaggggtagtggggaaacctaag
acagacagacaaacacctcagggtgtacatctggttagaaaactgtcatc
tgccctcttgtaccatttcgggagcctgtcctcacacccccaggggacac
aggaagaaagaggcagctgtcctttgcctgcagctgcctgccttgcttct
gatgagtgacctggtttccctctgggagcctcctcctgtcctctgactcg
ctcaggttttatgaggcaaggagagaaaacagaatcatagcatctctgtc
cagtggcacccagaatcctccattcctagactttcagttctgtcagccaa
tggcttcccctccaccatagcttcttttgttccccttaagagtcttgact
atgctccctacacattagtagcaaatgtgcagctgtgggacccctaacaa
gtagagcagggcttgtctcagtctctgttccctgccactgaatcaccttc
ccctaccttgttgggactcagggggagaggatgtgcctagtcctgctggg
actagatgtcccagggtggggtggtacccaagtggggctccccttcttta
aggagaaggggaagggcaataggtgaagggattgtaagggtgtgggactg
agaggagagga
gaattctggtttagagaagtactttgtagttgcgggatgaagtaaataac
ttatcctagttgttacatagccccgatgcccagagtcacccaagtgtctg
agttttttgtttgtttttcccaaagaacacttgcatcttggaaccaaatg
tcataagtaattttgaagggatttttttctatataccttttcttgctgtc
atttgaaaaacaatctgttgtagtaaaagtctcttaagccagggtacaat
acagtattagctaggaaagaaaatgatttttagcaagccaaagaattctg
ttaatgttatgttgggtttacagtggggtttggtcatatagcccaggttg
gcgttacaatatgcaccatcatggtcagctgagaaatggagtttaatgca
gatttaatagtgatcattattttcatgttaatagtaaacacatgaacatt
aagtatttggcctagacagtttatatttgtcattataaggatttgagata
tgtcattataaggatttgagatattttagagtttgatttttgttttttgt
tcgtttgttttggtttggggataggagacagggacatcaaagctgtataa
ttttagaaaaattctgtcctcgctagcacctttctccaccactatttcct
cctcaagtaatatcacatgctaccagcaaaaatatagctcttatttttat
cccttaaggcatatttagttatctgacaatctttggttttagattgggag
ttagttaaattaggattgagtattgattttatttagtaatgtagaacaca
gggcttttgcccttagatctagtggtggatggtgcttctctttaaaaagc
tatttaaaatgggtggcctctggcagcatgggcagttccctggccttttt
ctttaactactaatttctctagtggtgactgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135962872_135963632
seq2: B6Ng01-161P04.b_43_803

seq1  GAATTCTTGAGGTGGCAACCTCTCAATGAGGGTCAGTCACTCTTTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGTGGCAACCTCTCAATGAGGGTCAGTCACTCTTTTAGAT  50

seq1  CAAGAGCCAGAAGGCTGTATATGTTGAGGACCGGGTTAGGCATATTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCAGAAGGCTGTATATGTTGAGGACCGGGTTAGGCATATTCTAG  100

seq1  ATGTTGTCAGTGATCCAGCGGATGAGTGAGGGGTAGTGGGGAAACCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCAGTGATCCAGCGGATGAGTGAGGGGTAGTGGGGAAACCTAAG  150

seq1  ACAGACAGACAAACACCTCAGGGTGTACATCTGGTTAGAAAACTGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAAACACCTCAGGGTGTACATCTGGTTAGAAAACTGTCATC  200

seq1  TGCCCTCTTGTACCATTTCGGGAGCCTGTCCTCACACCCCCAGGGGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTGTACCATTTCGGGAGCCTGTCCTCACACCCCCAGGGGACAC  250

seq1  AGGAAGAAAGAGGCAGCTGTCCTTTGCCTGCAGCTGCCTGCCTTGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGAGGCAGCTGTCCTTTGCCTGCAGCTGCCTGCCTTGCTTCT  300

seq1  GATGAGTGACCTGGTTTCCCTCTGGGAGCCTCCTCCTGTCCTCTGACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGACCTGGTTTCCCTCTGGGAGCCTCCTCCTGTCCTCTGACTCG  350

seq1  CTCAGGTTTTATGAGGCAAGGAGAGAAAACAGAATCATAGCATCTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTTATGAGGCAAGGAGAGAAAACAGAATCATAGCATCTCTGTC  400

seq1  CAGTGGCACCCAGAATCCTCCATTCCTAGACTTTCAGTTCTGTCAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCACCCAGAATCCTCCATTCCTAGACTTTCAGTTCTGTCAGCCAA  450

seq1  TGGCTTCCCCTCCACCATAGCTTCTTTTGTTCCCCTTAAGAGTCTTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCCTCCACCATAGCTTCTTTTGTTCCCCTTAAGAGTCTTGACT  500

seq1  ATGCTCCCTACACATTAGTAGCAAATGTGCAGCTGTGGGACCCCTAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCTACACATTAGTAGCAAATGTGCAGCTGTGGGACCCCTAACAA  550

seq1  GTAGAGCAGGGCTTGTCTCAGTCTCTGTTCCCTGCCACTGAATCACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAGGGCTTGTCTCAGTCTCTGTTCCCTGCCACTGAATCACCTTC  600

seq1  CCCTACCTTGTTGGGACTCAGGGGGAGAGGATGTGCCTAGTCCTGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTTGTTGGGACTCAGGGGGAGAGGATGTGCCTAGTCCTGCTGGG  650

seq1  ACTAGATGTCCCAGGGTGGGGTGGTACCCAAGTGGGGCTCCCCTTCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGTCCCAGGGTGGGGTGGTACCCAAGTGGGGCTCCCCTTCTTTA  700

seq1  AGGAGAAGGGGAAGGGCAATAGGTGAAGGGATTGTAAGGGTGTGGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGGGAAGGGCAATAGGTGAAGGGATTGTAAGGGTGTGGGACTG  750

seq1  AGAGGAGAGGA  761
      |||||||||||
seq2  AGAGGAGAGGA  761

seq1: chr4_136134243_136135179
seq2: B6Ng01-161P04.g_71_1004 (reverse)

seq1  CAACAGTCACCACTTAGAGAAATTAGTAGTT-AAGAAAAAGGCCAAGTGA  49
      ||||||||||||| ||||||||||||||||| |||||||||||||   | 
seq2  CAACAGTCACCAC-TAGAGAAATTAGTAGTTAAAGAAAAAGGCCA--GGG  47

seq1  AACTGCCCATGCTGCCAGAGGCCACCCATTTTAAATAGCTATTCTAAAAG  99
      |||||||||||||||||||||||||||||||||||||||  || | ||||
seq2  AACTGCCCATGCTGCCAGAGGCCACCCATTTTAAATAGC--TTTTTAAAG  95

seq1  AGAAGCACCATCCACCACTAGATCTAAGGGCAAAAGCCCTGTGTTCTACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCATCCACCACTAGATCTAAGGGCAAAAGCCCTGTGTTCTACA  145

seq1  TTACTAAATAAAATCAATACTCAATCCTAATTTAACTAACT-CCAATCTA  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TTACTAAATAAAATCAATACTCAATCCTAATTTAACTAACTCCCAATCT-  194

seq1  AAAACCAAAGATTGTCAGATAACTAAATATGCCTTAAGGGATAAAAATAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAGATTGTCAGATAACTAAATATGCCTTAAGGGATAAAAATAA  244

seq1  GAGCTATATTTTTGCTGGTAGCATGTGATATTACTTGAGGAGGAAATAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATATTTTTGCTGGTAGCATGTGATATTACTTGAGGAGGAAATAGT  294

seq1  GGTGGAG-AAGGTGCTAGCGAGGACAGAATTTTTCTAAAATTATACAGCT  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAAAGGTGCTAGCGAGGACAGAATTTTTCTAAAATTATACAGCT  344

seq1  TTGATGTCCCTGTCTCCTATCCCCAAACCAAAACAAACGAACAAAAAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCCCTGTCTCCTATCCCCAAACCAAAACAAACGAACAAAAAACA  394

seq1  AAAATCAAACTCTAAAATATCTCAAATCCTTATAATGACATATCTCAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAACTCTAAAATATCTCAAATCCTTATAATGACATATCTCAAAT  444

seq1  CCTTATAATGACAAATATAAACTGTCTAGGCCAAATACTTAATGTTCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAATGACAAATATAAACTGTCTAGGCCAAATACTTAATGTTCATG  494

seq1  TGTTTACTATTAACATGAAAATAATGATCACTATTAAATCTGCATTAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTATTAACATGAAAATAATGATCACTATTAAATCTGCATTAAAC  544

seq1  TCCATTTCTCAGCTGACCATGATGGTGCATATTGTAACGCCAACCTGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTCAGCTGACCATGATGGTGCATATTGTAACGCCAACCTGGGC  594

seq1  TATATGACCAAACCCCACTGTAAACCCAACATAACATTAACAGAATTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACCAAACCCCACTGTAAACCCAACATAACATTAACAGAATTCTT  644

seq1  TGGCTTGCTAAAAATCATTTTCTTTCCTAGCTAATACTGTATTGTACCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTAAAAATCATTTTCTTTCCTAGCTAATACTGTATTGTACCCT  694

seq1  GGCTTAAGAGACTTTTACTACAACAGATTGTTTTTCAAATGACAGCAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGAGACTTTTACTACAACAGATTGTTTTTCAAATGACAGCAAGA  744

seq1  AAAGGTATATAGAAAAAAATCCCTTCAAAATTACTTATGACATTTGGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATATAGAAAAAAATCCCTTCAAAATTACTTATGACATTTGGTTC  794

seq1  CAAGATGCAAGTGTTCTTTGGGAAAAACAAACAAAAAACTCAGACACTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCAAGTGTTCTTTGGGAAAAACAAACAAAAAACTCAGACACTTG  844

seq1  GGTGACTCTGGGCATCGGGGCTATGTAACAACTAGGATAAGTTATTTACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCTGGGCATCGGGGCTATGTAACAACTAGGATAAGTTATTTACT  894

seq1  TCATCCCGCAACTACAAAGTACTTCTCTAAACCAGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCGCAACTACAAAGTACTTCTCTAAACCAGAATTC  934