BAC Information

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BAC

Clone NameB6Ng01-161P09
Chromosome4 (Build37)
Map Location 115,658,878 - 115,856,365
singlet/doubletdoublet
Overlap geneFaah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik
Upstream geneCmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1
Downstream geneLOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P09.bB6Ng01-161P09.g
ACCDH954930DH954931
length1,0241,007
definitionDH954930|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P09, 5' end.DH954931|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,658,878 - 115,659,897)(115,855,374 - 115,856,365)
sequence
gaattctcagactgcaagccaaaacaaatgctagcacaagatcaaatagc
aggtgtgcccctgtgaccttagcatccaggaggctgaggcaggatgactg
ctgagaatctaagactagcctgagctggtcaagtaccaggctagcccaga
ctacattgtttagtgtgtgattgagcagcagttctcaacaggaacaaaag
catgtaatgggggccgggaagggagatggggatggacctgggtgcaggag
cacagctccttacagccatctaatcctgaccacaccacagaaaccaagct
aaggagttatgagagccctgcatcttctctgctaaggagggaaatttgct
gccttctttacaggtaggctcagtctccccacctctgctttatcaggctt
ctcctggtaatttagggggacactgtgatcccagcagtccaactctgcta
taaatggccttccttccaaaggaccccagcctagcaccttctctccaatc
ttttctctcccccacctccaggcctgggcaagcctatccagtgttctgca
tcctagaagcagcctggtggagagccagagggccctggctgtgctggaga
tgactggataaagctatcctagtgaccaatgtgaaaggagaaagcctgaa
ctgagaatgtgactaaggtttccttgatcctcaagagcaacagcctaggg
cagtgtctcccagggtcaagacacagaaagctgatgtagctgtgtccaag
gagtttggggctccatcctgagctggcagcagaacttggcaatattgcta
atttaaattctgatttgagagggatgaaggatgagcattaagggagtcct
agagtcttgcatcatgttttaagagagcagctggttacctggacaatctg
tggcggggaacagagtctctgcagaaaagacctgatgagccattgcatga
agcttctaatggtgaagcttagttgcattggatatgcaagatatttgaag
atcctggcccatgagccatttgtc
gaattccagacggttgtgagctgccgtgtgggtgctggaaattgaacctg
actccctgtaagaacagccagtgctcttaacttcttagccgtctctccag
ccatgtttttcttttcttgtgtcttgtttgcttgcaaagaagtttcacta
ggttacccaggctggcccttaaactcctgggttcaaataatccatccagc
tcctgagtccagagtagctgtaagtagagtgagcaccactgctcacctga
tgtgtcgttggctacaaagcttgctctggcatgctgtagtcagcgcatgt
ttccatgcttgtacatataatataagcactcttcaccacaggctgccaca
cagttctggcagctctggttcctgagactggagctccatgcagcccttcc
tgctcctagcagatcccctgtgagaggtgaggaagtccccaggacaggga
tgggtcaaattaaccaaacttgtgatctgaagattccaccaacttttgct
cactaaccttcaagttttccctaccacaaacctgccacagacctctagac
cagtgtcccgcctgctcattgtcactcctattgggctctgagtcctttaa
agggtttgctaggcatcggttttcttctctcagcccagtgccctacatta
atttatcccgccaggaatttccatcttctactctcaaaagcctgattcct
aaccagaaggaattcctatctcaggcccaacgccctaaggtcagggctgg
cagggagacgcacttccagccaggcgcttgcgccctgtgcgcctccttca
cgggaagaatcgcctttactaaatcccggaacggatttgcatcacttgca
gcaggggggctcaaggatctcacaaagctccaaagctgtagttgaagggt
gcgggtgtctcattcccacccttagcccccaagaacttgtctaggttgcc
cgatagggcattggagacattgcccccctggggatttggggaaggaaaga
ggtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115658878_115659897
seq2: B6Ng01-161P09.b_42_1065

seq1  GAATTCTCAGACTGCAAGCCAAAACAAATGCTAGCACAAGATCAAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGACTGCAAGCCAAAACAAATGCTAGCACAAGATCAAATAGC  50

seq1  AGGTGTGCCCCTGTGACCTTAGCATCCAGGAGGCTGAGGCAGGATGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCCCCTGTGACCTTAGCATCCAGGAGGCTGAGGCAGGATGACTG  100

seq1  CTGAGAATCTAAGACTAGCCTGAGCTGGTCAAGTACCAGGCTAGCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCTAAGACTAGCCTGAGCTGGTCAAGTACCAGGCTAGCCCAGA  150

seq1  CTACATTGTTTAGTGTGTGATTGAGCAGCAGTTCTCAACAGGAACAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGTTTAGTGTGTGATTGAGCAGCAGTTCTCAACAGGAACAAAAG  200

seq1  CATGTAATGGGGGCCGGGAAGGGAGATGGGGATGGACCTGGGTGCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATGGGGGCCGGGAAGGGAGATGGGGATGGACCTGGGTGCAGGAG  250

seq1  CACAGCTCCTTACAGCCATCTAATCCTGACCACACCACAGAAACCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCTTACAGCCATCTAATCCTGACCACACCACAGAAACCAAGCT  300

seq1  AAGGAGTTATGAGAGCCCTGCATCTTCTCTGCTAAGGAGGGAAATTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTATGAGAGCCCTGCATCTTCTCTGCTAAGGAGGGAAATTTGCT  350

seq1  GCCTTCTTTACAGGTAGGCTCAGTCTCCCCACCTCTGCTTTATCAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTACAGGTAGGCTCAGTCTCCCCACCTCTGCTTTATCAGGCTT  400

seq1  CTCCTGGTAATTTAGGGGGACACTGTGATCCCAGCAGTCCAACTCTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTAATTTAGGGGGACACTGTGATCCCAGCAGTCCAACTCTGCTA  450

seq1  TAAATGGCCTTCCTTCCAAAGGACCCCAGCCTAGCACCTTCTCTCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCCTTCCTTCCAAAGGACCCCAGCCTAGCACCTTCTCTCCAATC  500

seq1  TTTTCTCTCCCCCACCTCCAGGCCTGGGCAAGCCTATCCAGTGTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCCCCCACCTCCAGGCCTGGGCAAGCCTATCCAGTGTTCTGCA  550

seq1  TCCTAGAAGCAGCCTGGTGGAGAGCCAGAGGGCCCTGGCTGTGCTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAGCAGCCTGGTGGAGAGCCAGAGGGCCCTGGCTGTGCTGGAGA  600

seq1  TGACTGGATAAAGCTATCCTAGTGACCAATGTGAAAGGAGAAAGCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGATAAAGCTATCCTAGTGACCAATGTGAAAGGAGAAAGCCTGAA  650

seq1  CTGAGAATGTGACTAAGG-TTCCTTGATCCTCAAGAGCAACAGCCTAGGG  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAGAATGTGACTAAGGTTTCCTTGATCCTCAAGAGCAACAGCCTAGGG  700

seq1  CAGTGTCTCCCAGGGTCAAGACACAG-AAGCTGATGTAGCTGTGTCCAAG  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGTGTCTCCCAGGGTCAAGACACAGAAAGCTGATGTAGCTGTGTCCAAG  750

seq1  GAG-TTGGGGCTCCATCCTGAGCTGGCAGCAGAACTTGGCAATATTGCTA  797
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGGGCTCCATCCTGAGCTGGCAGCAGAACTTGGCAATATTGCTA  800

seq1  ATTT-AATTCTGATTTGAGAGGGATGAAGGATGAGCATTAAGGGAGTCCT  846
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTCTGATTTGAGAGGGATGAAGGATGAGCATTAAGGGAGTCCT  850

seq1  AGAGTCTTGCATCATGATTTAAGAGAGCAGCTGGTAACCTGGACAATCTG  896
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  AGAGTCTTGCATCATGTTTTAAGAGAGCAGCTGGTTACCTGGACAATCTG  900

seq1  TGGC-GGGAACAGAGTCTCTGCAG-AAAGACCTTGAGAGGCCATTGCATG  944
      |||| ||||||||||||||||||| ||||||| |||   |||||||||||
seq2  TGGCGGGGAACAGAGTCTCTGCAGAAAAGACC-TGATGAGCCATTGCATG  949

seq1  AAGC-TCTAATGGTGAAAGCTAAGTTGCAATTGGATATGCAAGATATTGG  993
      |||| |||||||||| ||||| |||||| ||||||||||||||||||| |
seq2  AAGCTTCTAATGGTG-AAGCTTAGTTGC-ATTGGATATGCAAGATATTTG  997

seq1  AGATTCCTGGCCCATGAGCCATTTGTC  1020
      |   |||||||||||||||||||||||
seq2  AAGATCCTGGCCCATGAGCCATTTGTC  1024

seq1: chr4_115855374_115856365
seq2: B6Ng01-161P09.g_70_1076 (reverse)

seq1  CATCACCTCTCTCCTTCCCCAA--TCCCAGGGTG--CATGTCT-CACTG-  44
      |||||||||| |||||||||||   ||||||| |   |||||| || || 
seq2  CATCACCTCTTTCCTTCCCCAAATCCCCAGGGGGGCAATGTCTCCAATGC  50

seq1  CCTTTC-GGCAGCCTAGAC-AGTTCT--GGGGCT-AGGGTGGG-ATG-GA  87
      ||| || |||| ||||||| ||||||  |||||| |||||||| ||| ||
seq2  CCTATCGGGCAACCTAGACAAGTTCTTGGGGGCTAAGGGTGGGAATGAGA  100

seq1  CGCCCGCACCC-TCAACT-CAGCTTTGGAGCTTTGTGAGATCCTTGAGCC  135
      | ||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CACCCGCACCCTTCAACTACAGCTTTGGAGCTTTGTGAGATCCTTGAGCC  150

seq1  CTTCCCTTGCTGC-AGTGATGCAAATCCGTTCC-GGATTTAGTAAAGGC-  182
         ||| |||||| ||||||||||||||||||| ||||||||||||||| 
seq2  ---CCCCTGCTGCAAGTGATGCAAATCCGTTCCGGGATTTAGTAAAGGCG  197

seq1  ATTCTTCCCGTGAAGGAGGCGCACA-GGCGCCAGCGCCTGGCTGGAAGTG  231
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  ATTCTTCCCGTGAAGGAGGCGCACAGGGCGCAAGCGCCTGGCTGGAAGTG  247

seq1  CGTCTCCCTGCCAGCCCTGACCTAAGGGCGTTGGGACCTGAGATAGGAAT  281
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CGTCTCCCTGCCAGCCCTGACCTTAGGGCGTTGGG-CCTGAGATAGGAAT  296

seq1  TCCCTTCTGGTTAGGAATCAGGCTTTTGAGAGTAGAAGATGGAAATTCCT  331
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-CCTTCTGGTTAGGAATCAGGCTTTTGAGAGTAGAAGATGGAAATTCC-  344

seq1  TGGCGGGAT-AATTAATGTAGGGCACTGGGCTGAGAGAAGAAAACCGATG  380
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGATAAATTAATGTAGGGCACTGGGCTGAGAGAAGAAAACCGATG  394

seq1  CCTAGCAAACCCTTTAAAGGACTCAGAGCCCAATAGGAGTGACAATGAGC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAAACCCTTTAAAGGACTCAGAGCCCAATAGGAGTGACAATGAGC  444

seq1  AGGCGGGACACTGGTCTAGAGGTCTGTGGCAGGTTTGTGGTAGGGAAAAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGACACTGGTCTAGAGGTCTGTGGCAGGTTTGTGGTAGGGAAAAC  494

seq1  TTGAAGGTTAGTGAGC-AAAGTTGGTGGAATCTTCAGATCACAAGTTTGG  529
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGAAGGTTAGTGAGCAAAAGTTGGTGGAATCTTCAGATCACAAGTTTGG  544

seq1  TTAATTTGACCCATCCCTGTCCTGGGGACTTCCTCACCTCTCACAGGGGA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGACCCATCCCTGTCCTGGGGACTTCCTCACCTCTCACAGGGGA  594

seq1  TCTGCTAGGAGCAGGAAGGGCTGCATGGAGCTCCAGTCTCAGGAACCAGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGGAGCAGGAAGGGCTGCATGGAGCTCCAGTCTCAGGAACCAGA  644

seq1  GCTGCCAGAACTGTGTGGCAGCCTGTGGTGAAGAGTGCTTATATTATATG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGAACTGTGTGGCAGCCTGTGGTGAAGAGTGCTTATATTATATG  694

seq1  TACAAGCATGGAAACATGCGCTGACTACAGCATGCCAGAGCAAGCTTTGT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCATGGAAACATGCGCTGACTACAGCATGCCAGAGCAAGCTTTGT  744

seq1  AGCCAACGACACATCAGGTGAGCAGTGGTGCTCACTCTACTTACAGCTAC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACGACACATCAGGTGAGCAGTGGTGCTCACTCTACTTACAGCTAC  794

seq1  TCTGGACTCAGGAGCTGGATGGATTATTTGAACCCAGGAGTTTAAGGGCC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCAGGAGCTGGATGGATTATTTGAACCCAGGAGTTTAAGGGCC  844

seq1  AGCCTGGGTAACCTAGTGAAACTTCTTTGCAAGCAAACAAGACACAAGAA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGTAACCTAGTGAAACTTCTTTGCAAGCAAACAAGACACAAGAA  894

seq1  AAGAAAAACATGGCTGGAGAGACGGCTAAGAAGTTAAGAGCACTGGCTGT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACATGGCTGGAGAGACGGCTAAGAAGTTAAGAGCACTGGCTGT  944

seq1  TCTTACAGGGAGTCAGGTTCAATTTCCAGCACCCACACGGCAGCTCACAA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGGAGTCAGGTTCAATTTCCAGCACCCACACGGCAGCTCACAA  994

seq1  CCGTCTGGAATTC  992
      |||||||||||||
seq2  CCGTCTGGAATTC  1007