BAC Information

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BAC

Clone NameB6Ng01-162G23
Chromosome4 (Build37)15 (Build37)
Map Location 14,305,041 - 14,305,63396,287,016 - 96,287,224
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G23.bB6Ng01-162G23.g
ACCDH955274DH955275
length1,002514
definitionDH955274|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G23, 5' end.DH955275|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,305,041 - 14,305,633)(96,287,016 - 96,287,224)
sequence
gaattcattcacacacatttctgccacgtttttgtttacttttttgaggc
atgtattttcagagttctttattccaccattttttgctggcaccctcttg
cgcgcaccggactcgaccagcaagaacgaagctgcaacaggatctttctg
cacacgtttattgggagagcttgattacagaggcgaaaagaccccgagcc
cagaactggtgctgcttttataggactaggagaggcgtgtctcacacctg
gattggttatgcactacgcctcatttgcatgttcctcatctgattggcta
ctctctctcagtacctcacagagcctcattatcatacctcatttgcatgt
ctcacatccgattggttattctctctcagtaccttacagaacctcattat
catacctcatttgcatgtctcacatctgattggttatactctcagtacct
tacagaacctcattatcatgcctaggccaggcagtgtctttgcaaaaaac
tttactgcatatgtacacattggttgtttgtccaatcttatgcgtggtgg
ccagcagtagtcagtgccactcagcaacggcacatgtggcttcccacagc
acccctctttcattatttactataacctgcactatttactcatttattcg
ttacacatgggtcatgctaaagagatggatttccctttgagttaactgtg
cctgagaaaaacaactctcagagtgtttattttagaggaacttcaactag
atttgttcagttttctttattctaaaaataaaaatgaaatagacatagag
caaaatttggcaatcatataaatagatgtactctttaatttaaaaaaatc
agatttacaaatgtagtatacatgtataacaactaggtgatagatgacat
tttcctcctcacattaaaataatgattcaaataatgaataaagataaaga
atccattaaggactcatggcactctggtatggagatctaatgcacagtcc
tg
ttctccttcatctattcctattatatgtaggtttgtggttttgttttgtt
ttgtttgtttgttttttatggtgtcccagatttcctgggatgctttgtgt
cagacattttttagattttgcaatttctttgaccaatttatccatttctt
tgattgtgtcttcaatgcctgctttcttttatttcttgtattctgttaat
gaattttgccttttgcctttctcgctcctgtctgcatgcctacacttttt
ttcttttcatttttttttgttttttgtttgtttgtttgtttatttgttta
tttgttgtgcttcaactatgatggaatatttatgcagtggtaggatagct
ggagatatactactctggttattgttgattgtgttcttatgctgctgtct
aggtttgggttgattagagttttaggtgattattatttgtagatttgcct
ttgttgggtggtgttattccttgttttttgtttcttctctggatgtttag
agactgtgttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14305041_14305633
seq2: B6Ng01-162G23.b_46_638 (reverse)

seq1  GAAGCCACATGTGCCGTTGCTGAGTGGCACTGACTACTGCTGGCCACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACATGTGCCGTTGCTGAGTGGCACTGACTACTGCTGGCCACCAC  50

seq1  GCATAAGATTGGACAAACAACCAATGTGTACATATGCAGTAAAGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGATTGGACAAACAACCAATGTGTACATATGCAGTAAAGTTTTTT  100

seq1  GCAAAGACACTGCCTGGCCTAGGCATGATAATGAGGTTCTGTAAGGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACACTGCCTGGCCTAGGCATGATAATGAGGTTCTGTAAGGTACT  150

seq1  GAGAGTATAACCAATCAGATGTGAGACATGCAAATGAGGTATGATAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATAACCAATCAGATGTGAGACATGCAAATGAGGTATGATAATGA  200

seq1  GGTTCTGTAAGGTACTGAGAGAGAATAACCAATCGGATGTGAGACATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTAAGGTACTGAGAGAGAATAACCAATCGGATGTGAGACATGCA  250

seq1  AATGAGGTATGATAATGAGGCTCTGTGAGGTACTGAGAGAGAGTAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTATGATAATGAGGCTCTGTGAGGTACTGAGAGAGAGTAGCCAA  300

seq1  TCAGATGAGGAACATGCAAATGAGGCGTAGTGCATAACCAATCCAGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGGAACATGCAAATGAGGCGTAGTGCATAACCAATCCAGGTGT  350

seq1  GAGACACGCCTCTCCTAGTCCTATAAAAGCAGCACCAGTTCTGGGCTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACGCCTCTCCTAGTCCTATAAAAGCAGCACCAGTTCTGGGCTCGG  400

seq1  GGTCTTTTCGCCTCTGTAATCAAGCTCTCCCAATAAACGTGTGCAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTCGCCTCTGTAATCAAGCTCTCCCAATAAACGTGTGCAGAAAG  450

seq1  ATCCTGTTGCAGCTTCGTTCTTGCTGGTCGAGTCCGGTGCGCGCAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTGCAGCTTCGTTCTTGCTGGTCGAGTCCGGTGCGCGCAAGAGG  500

seq1  GTGCCAGCAAAAAATGGTGGAATAAAGAACTCTGAAAATACATGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCAAAAAATGGTGGAATAAAGAACTCTGAAAATACATGCCTCAA  550

seq1  AAAAGTAAACAAAAACGTGGCAGAAATGTGTGTGAATGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAACAAAAACGTGGCAGAAATGTGTGTGAATGAATTC  593

seq1: chr15_96287016_96287224
seq2: B6Ng01-162G23.g_109_588 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATCCAACACAGTCTCTAAACATCCAGAGAAGAAACAAAAAACAAGGAATA  50

seq1  --------------------------------------------------  0
                                                        
seq2  ACACCACCCAACAAAGGCAAATCTACAAATAATAATCACCTAAAACTCTA  100

seq1  --------------------------------------------------  0
                                                        
seq2  ATCAACCCAAACCTAGACAGCAGCATAAGAACACAATCAACAATAACCAG  150

seq1  --------------------------------------------------  0
                                                        
seq2  AGTAGTATATCTCCAGCTATCCTACCACTGCATAAATATTCCATCATAGT  200

seq1  ---ATC-CAACA---CAGCTTCTAAACGGACTTTAAGAAACAAAAAACCA  43
         | | |||||    | |   |||||  ||   || ||||||||||| |
seq2  TGAAGCACAACAAATAAACAAATAAACAAAC--AAACAAACAAAAAACAA  248

seq1  AAAA----GACAGGTTACAACACTTT--GCTTTTAGCTA------AGTA-  80
      ||||    || | |  | || | | |  || |  ||  |      || | 
seq2  AAAAAAATGAAAAG-AAAAAAAGTGTAGGCATGCAGACAGGAGCGAGAAA  297

seq1  --CTCTAGG--------ATTTCTATGTTTCCACAAATGACAG--------  112
        |   |||        |||   |   | | | |||| | ||        
seq2  GGCAAAAGGCAAAATTCATTAACAGAATACAAGAAATAAAAGAAAGCAGG  347

seq1  -ATTTAAGGC---------------CATAAATT-GCCACTCTTCTT----  141
       ||| ||| |                ||||||| | ||      ||    
seq2  CATTGAAGACACAATCAAAGAAATGGATAAATTGGTCAAAGAAATTGCAA  397

seq1  --TTTAAAA------GGACTCCTAGGCTAGAGGGGTAGCTTGG----CAG  179
        | |||||       ||| |  ||  |    ||  | || ||    || 
seq2  AATCTAAAAAATGTCTGACACAAAGCATCCCAGGAAATCTGGGACACCAT  447

seq1  TAAAAACA---AGACAAAACAAAACAAAACCAC  209
       |||||||   | ||||||||||||||||||||
seq2  AAAAAACAAACAAACAAAACAAAACAAAACCAC  480