BAC Information

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BAC

Clone NameB6Ng01-162K04
Chromosome4 (Build37)
Map Location 132,254,671 - 132,432,722
singlet/doubletdoublet
Overlap geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12
Upstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneOTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K04.bB6Ng01-162K04.g
ACCDH955425DH955426
length270943
definitionDH955425|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K04, 5' end.DH955426|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,432,453 - 132,432,722)(132,254,671 - 132,255,615)
sequence
cttggaaaagatggatgagcataatcatcatggctctaggaattctagac
ttgatttcaaataaagcaaacaaatcaaaatctcttcttgctcatcagca
ccaactagggtcacgtgggcatcatgaaaactgcgtcctgagccgctcat
cgatgctaagaccctgactgagctcagtaaatgttaaccatacaaggagc
atgtggacaagtggtccaaaggggagagagagagagagagagagagagag
agagaaggagggagggaagg
gaattctctaaatttacatggcttcaaactcacgtagaccccctgcctct
gcttcccaactgctagaataaagtcatgcccccatgccattccttcttta
atgttttaatgtttaatgtttttaattttgattctctaaaattttgttac
tgcattttcacacatttgtaattttttttttttagtttagtttttcttgt
ttttggttttggtgttttggtttctcattccactgtgactgacagataac
tcattgttttgtctcccccctcagcgggtatttctctgggacttggacga
aaccatcatcatctttcattcccttctcactggatcctatgctcagaagt
atggaaaggtaactggagtcttctgttggaactgtccctccctgaaagtt
gttttctctgctgcctctcgtgccctattgactctttgcatatatatagt
tgacagtattagggattggagctcaagagatggcatataattaagaacac
ttacagctcttacaaaaaggactttggtttggttcccagtgcccacatgg
cagcttataaccatctacaactccaattccagcggatccaacactctttt
gtggcctctcctttacattgtattcatctgatacaaggacaaaacatgta
agcaaaacacccatatacataaacatttgaaacaaaaccaaaaaatattg
ggatcaaacccaggccctcacacatgctaggcaagccggtgtaccactga
gctgtgttccttgttctgttggcctggagcttctcatgtataaaacttga
ctatgtgcctgtgtctggcaggctacatacctaggtagctttgatggtaa
ctctaacaactgatgtagaagcagtactgactcttgaagtattccaaaat
ttcgtttcaggtgataagaaacaacaggaaaagtgcttgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132432453_132432722
seq2: B6Ng01-162K04.b_52_321 (reverse)

seq1  CCTTCCCTCCCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCCCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCC  50

seq1  TTTGGACCACTTGTCCACATGCTCCTTGTATGGTTAACATTTACTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCACTTGTCCACATGCTCCTTGTATGGTTAACATTTACTGAGCT  100

seq1  CAGTCAGGGTCTTAGCATCGATGAGCGGCTCAGGACGCAGTTTTCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGGTCTTAGCATCGATGAGCGGCTCAGGACGCAGTTTTCATGAT  150

seq1  GCCCACGTGACCCTAGTTGGTGCTGATGAGCAAGAAGAGATTTTGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGTGACCCTAGTTGGTGCTGATGAGCAAGAAGAGATTTTGATTTG  200

seq1  TTTGCTTTATTTGAAATCAAGTCTAGAATTCCTAGAGCCATGATGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTATTTGAAATCAAGTCTAGAATTCCTAGAGCCATGATGATTAT  250

seq1  GCTCATCCATCTTTTCCAAG  270
      ||||||||||||||||||||
seq2  GCTCATCCATCTTTTCCAAG  270

seq1: chr4_132254671_132255615
seq2: B6Ng01-162K04.g_69_1010

seq1  GAATTCTCTAAATTTACATGGCTTCAAACTCACGTAGACCCCCTGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAATTTACATGGCTTCAAACTCACGTAGACCCCCTGCCTCT  50

seq1  GCTTCCCAACTGCTAGAATAAAGTCATGCCCCCATGCCATTCCTTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAACTGCTAGAATAAAGTCATGCCCCCATGCCATTCCTTCTTTA  100

seq1  ATGTTTTAATGTTTAATGTTTTTAATTTTGATTCTCTAAAATTTTGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAATGTTTAATGTTTTTAATTTTGATTCTCTAAAATTTTGTTAC  150

seq1  TGCATTTTCACACATTTGTAATTTTTTTTTTTTAGTTTAGTTTTTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCACACATTTGTAATTTTTTTTTTTTAGTTTAGTTTTTCTTGT  200

seq1  TTTTGGTTTTGGTGTTTTGGTTTCTCATTCCACTGTGACTGACAGATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTGGTGTTTTGGTTTCTCATTCCACTGTGACTGACAGATAAC  250

seq1  TCATTGTTTTGTCTCCCCCCTCAGCGGGTATTTCTCTGGGACTTGGACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTTGTCTCCCCCCTCAGCGGGTATTTCTCTGGGACTTGGACGA  300

seq1  AACCATCATCATCTTTCATTCCCTTCTCACTGGATCCTATGCTCAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATCATCTTTCATTCCCTTCTCACTGGATCCTATGCTCAGAAGT  350

seq1  ATGGAAAGGTAACTGGAGTCTTCTGTTGGAACTGTCCCTCCCTGAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGTAACTGGAGTCTTCTGTTGGAACTGTCCCTCCCTGAAAGTT  400

seq1  GTTTTCTCTGCTGCCTCTCGTGCCCTATTGACTCTTTGCATATATATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTGCTGCCTCTCGTGCCCTATTGACTCTTTGCATATATATAGT  450

seq1  TGACAGTATTAGGGATTGGAGCTCAAGAGATGGCATATAATTAAGAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTATTAGGGATTGGAGCTCAAGAGATGGCATATAATTAAGAACAC  500

seq1  TTACAGCTCTTACAAAAAGGACTTTGGTTTGGTTCCCAGTGCCCACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTCTTACAAAAAGGACTTTGGTTTGGTTCCCAGTGCCCACATGG  550

seq1  CAGCTTATAACCATCTACAACTCCAATTCCAGCGGATCCAACACTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATAACCATCTACAACTCCAATTCCAGCGGATCCAACACTCTTTT  600

seq1  GTGGCCTCTCC-TTACATTGTATTCATCTGATACAAGGACAAAACATGTA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCTCCTTTACATTGTATTCATCTGATACAAGGACAAAACATGTA  650

seq1  AGCAAAACACCCATATACATAAACATTTGAAACAAAACCAAAAAATATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACACCCATATACATAAACATTTGAAACAAAACCAAAAAATATTG  700

seq1  GGATCAAACCCAGGCCCTCACACATGCTAGGCAAG-CGGTGTACCACTGA  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGATCAAACCCAGGCCCTCACACATGCTAGGCAAGCCGGTGTACCACTGA  750

seq1  GCTGTGTTCCTAGTCCTGTTGGCCTGGAGCTTCTCATGTATAAAACTTGA  798
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCCTTGTTCTGTTGGCCTGGAGCTTCTCATGTATAAAACTTGA  800

seq1  CTATGTGCCTTGTGTCTGGCAGGCTACATACCTAGGTAGCTTTGATGGTA  848
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCC-TGTGTCTGGCAGGCTACATACCTAGGTAGCTTTGATGGTA  849

seq1  ACACTAAACAACTGATGTAGAAGCAGTACTGACTC-TGAAGTTATTCCAG  897
      || || ||||||||||||||||||||||||||||| ||||| ||||||| 
seq2  ACTCT-AACAACTGATGTAGAAGCAGTACTGACTCTTGAAG-TATTCCAA  897

seq1  AATTCGTTTTCAGGTTGATAAGATAACAACAGGTAAAAGTGCTTGCTG  945
      ||||   ||||||| |||||||| ||||||||| ||||||||||||||
seq2  AATTTCGTTTCAGG-TGATAAGA-AACAACAGG-AAAAGTGCTTGCTG  942