BAC Information

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BAC

Clone NameB6Ng01-162K14
Chromosome4 (Build37)
Map Location 142,859,261 - 142,859,965
singlet/doubletsinglet
Overlap genePdpn
Upstream geneEG665983, LOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K14.bB6Ng01-162K14.g
ACCDH955445DH955446
length1,078711
definitionDH955445|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K14, 5' end.DH955446|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagttttataccccattttttgattgggttgtttggtt
ttctggtgattagcttcttgagttctttatatattttggatattagccct
ctatcagatgtggggttagtgaagactttccccccaatctgtaggttgct
aatttatcctactgactaggtcctttgccttacagaagctttccagtttc
atgaggtcccatttatcaattcttgatcttagagcctgagccactggagt
tctcacaggaaattccaccctgtgccagtgagttcaaggctctttcccac
tttctcttctactagattcagtgtacctggttttaggttgaggtccttga
tccacttggacttgaactttgtgcaaggtgacaaatattttcatttttct
acatacagatagccagtttaaccagcatcatgtattgaagatgctttctt
ttatccattgtatatttttggcttctttgccaaagatcaagtgtatgtaa
gtatgtggttatatttctgggtcttcaattctattccactgatcaatgtg
tctgtctccgtaccatgcagtttttatcactagtactctgtagtatggct
tgtagtcagggatcatgatttatctgtcttgttgattctcttaaaaaact
agcttttggttttgttgattctttgcatagttctctttgtttctatttgg
ttggtttggccctgagttcacaattttctgccatctactcctcttgagtg
tatttgcttctttttgttctagagcagtcaggtgtgctgttaaattgcta
gagtaggatctctccaatttcttttacctgggcactaagtgctgtgaatt
ttcctcttagcactactttcatttttgttccataagtttgggtatgttgt
gacatcattttcactgaattccaggaagtctttaatttctttatttcttc
ccagaccaagttatcattgggtacagagttgttcagtttccaaatgtatt
tgggctttctgctggttggggttgtaattgaaggccggccctaatccggg
gtgatctgatagaatgccatggggaatt
gaattccatgtcacaagcaagtagcagaactgccctgctgttctcgttag
ggaatgggctcgtctagtctcccaagtccagctgagtcaagtgtggaaac
actgagccatttttcttggcttggtaccagagagcaaacccagaccttga
gtatgctcgccccgcacagtaccgccatgtcccagctccagcccgggtct
aaacccatcttgtgaatcaagaggttccctagtctcttagatttatcaca
cacaacacactggcttcattgttgatgggcatgcttctctatggccctgg
aaaactcagaagagaaggaacatacttcaacataatgaagtaggtgtaat
acattaaaaaaatgtatgaatgccgggcgtggtggctcacacctttaatc
ccagcactggggaggcagaggcaggcggatttctgagttcaaggccagtc
tggtctacaaagtgagttctaggacagccagggctatacagagaaaccct
gtctcgaaaaacaaaaaacaaaaaacaacaacaaaaaaaaaagtatgaaa
agttacagccaacatttaagtgggaaaactaattattaccataacaaaga
aaaaagatgagagcttagtcattataatagagtaaactgatatgttgtta
ttccccacagctgccatttaagtaaatacaccaagtgtgggggtgggggt
gggaggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142859261_142859965
seq2: B6Ng01-162K14.g_70_780

seq1  GAATTCCATGTCACAAGCAAGTAGCAGAACTGCCCTGCTGTTCTCGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCACAAGCAAGTAGCAGAACTGCCCTGCTGTTCTCGTTAG  50

seq1  GGAATGGGCTCGTCTAGTCTCCCAAGTCCAGCTGAGTCAAGTGTGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGCTCGTCTAGTCTCCCAAGTCCAGCTGAGTCAAGTGTGGAAAC  100

seq1  ACTGAGCCATTTTTCTTGGCTTGGTACCAGAGAGCAAACCCAGACCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATTTTTCTTGGCTTGGTACCAGAGAGCAAACCCAGACCTTGA  150

seq1  GTATGCTCGCCCCGCACAGTACCGCCATGTCCCAGCTCCAGCCCGGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCGCCCCGCACAGTACCGCCATGTCCCAGCTCCAGCCCGGGTCT  200

seq1  AAACCCATCTTGTGAATCAAGAGGTTCCCTAGTCTCTTAGATTTATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATCTTGTGAATCAAGAGGTTCCCTAGTCTCTTAGATTTATCACA  250

seq1  CACAACACACTGGCTTCATTGTTGATGGGCATGCTTCTCTATGGCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACACTGGCTTCATTGTTGATGGGCATGCTTCTCTATGGCCCTGG  300

seq1  AAAACTCAGAAGAGAAGGAACATACTTCAACATAATGAAGTAGGTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGAAGAGAAGGAACATACTTCAACATAATGAAGTAGGTGTAAT  350

seq1  ACATTAAAAAAATGTATGAATGCCGGGCGTGGTGGCTCACACCTTTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAAAATGTATGAATGCCGGGCGTGGTGGCTCACACCTTTAATC  400

seq1  CCAGCACTGGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGTC  450

seq1  TGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCT  500

seq1  GTCTCGAAAAACAAAAAACAAAAAACAACAACAAAAAAAAAAGTATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAACAAAAAACAAAAAACAACAACAAAAAAAAAAGTATGAAA  550

seq1  AGTTACAGCCAACA-TTAAGTGGGAAAACTAATTATTACCATAACAAAGA  599
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTACAGCCAACATTTAAGTGGGAAAACTAATTATTACCATAACAAAGA  600

seq1  AGAAAGATGAGAGCTTAGTCATTATAATAGAGT-AACTGATATGTTGTTA  648
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAGATGAGAGCTTAGTCATTATAATAGAGTAAACTGATATGTTGTTA  650

seq1  TTCCCCACAGCTGCCA-TTAAGTAAATACACCAAGTGT-GGGGTGGGG--  694
      |||||||||||||||| ||||||||||||||||||||| |||||||||  
seq2  TTCCCCACAGCTGCCATTTAAGTAAATACACCAAGTGTGGGGGTGGGGGT  700

seq1  TGGAGGTGTGT  705
       |||||||| |
seq2  GGGAGGTGTTT  711