BAC Information

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BAC

Clone NameB6Ng01-162L21
Chromosome4 (Build37)
Map Location 34,553,742 - 34,651,557
singlet/doubletdoublet
Overlap geneOrc3l, Rars2, Slc35a1
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik
Downstream gene1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L21.bB6Ng01-162L21.g
ACCDH955503DH955504
length1,0391,078
definitionDH955503|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L21, 5' end.DH955504|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,650,532 - 34,651,557)(34,553,742 - 34,554,836)
sequence
gaattcacagacacctagcagctgtccacaacccagaaggctgagtgtca
tcagacagcgctgaggtctctagcagagacagagaccgccagtttgctag
acttgtaacatcccaaactcttcccggtcattcaagcacggtctttaatc
aggagaaggttcagctggaggtgccagacacactctgtaagttcctcctg
ttgatatagcgtcacattgtgtgtgtgtgtgtgtgtgtgtgtgtttgcat
gtgtgcgtgtacatgtgtgtgcacacatacactgcatcttagtgaccatg
tccctaggacctcagtcctaggatctggtagagaggctgagtaataggta
gaagagctggtagagccattaggggaagaaactatgggaccatgcataac
attacaatctattagtcattataattccagtccccccaatctatatttga
ctaaatattaagaataatgtgctcaacatttaaataataatactgcctgg
cctagtggaatgaagataacagatgaagaaaacagacattttaaataagt
aatttaaaactatgactatatgtttaccgctgcacttacagttattttgt
agtccacgatgtcttttaaccaccccccacccccggcttgacttgtaacc
tcccgtggaatgactagctctaattcttaggaaacattggtctttcagtc
taaattatcatacctcttacctgtagatactaaagtcagtggtcttagca
ttttgttattacactgcaattaactgggaaaggggaactgtggggccaga
tgatttagaagaaattcagtaacagtataatacttcttttaacaagattg
tctttttttttcatgcaacaaatataacagtgatggaggtcagatctgtt
agaagttcagagtcatgtagtgttcttataagcatagccagatcttgctt
tggattttatgggttaaatgagaaatgaaggcttgaagcgatggcttaac
cagttaagagccacagagaaactgaaggttctgagcacc
gaattcaatgccctcttctgtggagtgtaaagtagtaaagacagatggga
agcactaagagactggacagcgggtgcactggaaaaatgcctcgtgggta
agcgtgcacgctgtgcaagcagaaagacctaagttggaattcctagcacc
cacataaaaattgtgtgcaactctcattcaaaaacaagacactatagcat
cgcgtcgcttaagccgaacgagcggctggcactggagctgctgccattac
tatactgacgatattcacagccaatatgcagtaagctctaggccaacctg
agcttaagactatgtctcaagaagcaaaccaaaacacagcaaaaattgga
tgctagcacaaatttcgaaatggcttcatttcagacttgtgtaacctctt
aactgaatttaagagttcaccacagtgattttttttttttcttagaaatg
atcatgttgcagcgacgaaggccatacataactttagaacatgacacatg
ttttacttgtggtatataggctgtgtttgattgtactttctcattttcta
tatatactcttatacatcattagatatgagaagtaaatacaagactcata
ctattttattacagaaatgtaaaaaggaaattattcacctctgtttcaga
tttcatccgttgccatagcaagctatatgtttcaaatcgaagtttactgt
cctcagagtcaagttcctcattattaaaataatcctctaaaaaaaaaaaa
acccagaaagtcaagtttttttaacacaataaaattaagagactgtacat
agagacaaacagcatgggagaggggattaaaacattttcttttttttttt
ctttttttggggtttttttttttgtttggtttgttgtttggttttcgaga
caggttcactgttcgcctggctgtccaggaactcactctgtaaccaggct
gggcctcgaactagaattcgctgccttctgctcaaaacatttctatgtcc
tctatgcatcaaactatgtatctacatatacatggtctcttacattggaa
aaacaattaggttatcatgattatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34650532_34651557
seq2: B6Ng01-162L21.b_43_1080 (reverse)

seq1  GTGCTCAGAACC-TCAG-TTCTCTGT-GCTCTTAACTGGTT-AGCCATCG  46
      |||||||||||| |||| |||||||| |||||||||||||| ||||||||
seq2  GTGCTCAGAACCTTCAGTTTCTCTGTGGCTCTTAACTGGTTAAGCCATCG  50

seq1  C-TCCAGCCCTCATTTTCTCATTTAACCATTAAAATACAAAGCAGGATCT  95
      | || |||| ||| ||||||||||||||  |||||| ||||||| |||||
seq2  CTTCAAGCCTTCA-TTTCTCATTTAACCCATAAAATCCAAAGCAAGATCT  99

seq1  GGCTATGCTTATAAGA--CCTACATGACTCTG-ACTTCTAACAGATCTGA  142
      ||||||||||||||||   ||||||||||||| |||||||||||||||||
seq2  GGCTATGCTTATAAGAACACTACATGACTCTGAACTTCTAACAGATCTGA  149

seq1  CCTCCATCACTGTTATATTTGTTGCATG-AAAAAAAAGACAATCTTGTTA  191
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTCCATCACTGTTATATTTGTTGCATGAAAAAAAAAGACAATCTTGTTA  199

seq1  AAAGAAGTATTATACTGTTACTGAATTTCTTCT-AATCATCTGGCCCCAC  240
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGAAGTATTATACTGTTACTGAATTTCTTCTAAATCATCTGGCCCCAC  249

seq1  AGTT-CCCTTTCCCAGTTAAATGCAGTGTAATAACAAAATGCTAAGACCA  289
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTCCCCTTTCCCAGTTAATTGCAGTGTAATAACAAAATGCTAAGACCA  299

seq1  CTGAC-TTAGTATCTACAGGTAAGAGGTATGATAATTTAGACTGAAAGAC  338
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTAGTATCTACAGGTAAGAGGTATGATAATTTAGACTGAAAGAC  349

seq1  CAATGTTTCCTAAGAATTAGAGCTAGTCATTCCACGGGAGGTTACAAGTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTCCTAAGAATTAGAGCTAGTCATTCCACGGGAGGTTACAAGTC  399

seq1  AAGCCGGGGGTGGGGGGTGGTTAAAAGACATCGTGGACTAC-AAATAACT  437
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGCCGGGGGTGGGGGGTGGTTAAAAGACATCGTGGACTACAAAATAACT  449

seq1  GTAAGTGCAGCGGTAAACATATAGTCATAGTTTTAAATTACTTATTTAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCAGCGGTAAACATATAGTCATAGTTTTAAATTACTTATTTAAA  499

seq1  ATGTCTGTTTTCTTCATCTGTTATCTTCATTCCACTAGGCCAGGCAGTAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTTCTTCATCTGTTATCTTCATTCCACTAGGCCAGGCAGTAT  549

seq1  TATTATTTAAATGTTGAGCACATTATTCTTAATATTTAGTCAAATATAGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAAATGTTGAGCACATTATTCTTAATATTTAGTCAAATATAGA  599

seq1  TTGGGGGGACTGGAATTATAATGACTAATAGATTGTAATGTTATGCATGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGACTGGAATTATAATGACTAATAGATTGTAATGTTATGCATGG  649

seq1  TCCCATAGTTTCTTCCCCTAATGGCTCTACCAGCTCTTCTACCTATTACT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGTTTCTTCCCCTAATGGCTCTACCAGCTCTTCTACCTATTACT  699

seq1  CAGCCTCTCTACCAGATCCTAGGACTGAGGTCCTAGGGACATGGTCACTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCTACCAGATCCTAGGACTGAGGTCCTAGGGACATGGTCACTA  749

seq1  AGATGCAGTGTATGTGTGCACACACATGTACACGCACACATGCAAACACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTGTATGTGTGCACACACATGTACACGCACACATGCAAACACA  799

seq1  CACACACACACACACACACACAATGTGACGCTATATCAACAGGAGGAACT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAATGTGACGCTATATCAACAGGAGGAACT  849

seq1  TACAGAGTGTGTCTGGCACCTCCAGCTGAACCTTCTCCTGATTAAAGACC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGTGTCTGGCACCTCCAGCTGAACCTTCTCCTGATTAAAGACC  899

seq1  GTGCTTGAATGACCGGGAAGAGTTTGGGATGTTACAAGTCTAGCAAACTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGAATGACCGGGAAGAGTTTGGGATGTTACAAGTCTAGCAAACTG  949

seq1  GCGGTCTCTGTCTCTGCTAGAGACCTCAGCGCTGTCTGATGACACTCAGC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCTCTGTCTCTGCTAGAGACCTCAGCGCTGTCTGATGACACTCAGC  999

seq1  CTTCTGGGTTGTGGACAGCTGCTAGGTGTCTGTGAATTC  1026
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTTGTGGACAGCTGCTAGGTGTCTGTGAATTC  1038

seq1: chr4_34553742_34554836
seq2: B6Ng01-162L21.g_67_1144

seq1  GAATTCAATGCCCTCTTCTGTGGAGTGTAAAGTAGTAAAGACAGATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCCTCTTCTGTGGAGTGTAAAGTAGTAAAGACAGATGGGA  50

seq1  AGCACTAAGAGACTGGACAGCGGGTGCACTGGAAAAATGCCTCGTGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAGAGACTGGACAGCGGGTGCACTGGAAAAATGCCTCGTGGGTA  100

seq1  AGCGTGCACGCTGTGCAAGCAGAAAGACCTAAGTTGGAATTCCTAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCACGCTGTGCAAGCAGAAAGACCTAAGTTGGAATTCCTAGCACC  150

seq1  CACATAAAAATTGTGTGCAACTCTCATTCAAAAACAAGACACTATAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAAATTGTGTGCAACTCTCATTCAAAAACAAGACACTATAGCAT  200

seq1  CGCGTCGCTTAAGCCGAACGAGCGGCTGGCACTGGAGCTGCTGCCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCGCTTAAGCCGAACGAGCGGCTGGCACTGGAGCTGCTGCCATTAC  250

seq1  TATACTGACGATATTCACAGCCAATATGCAGTAAGCTCTAGGCCAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGACGATATTCACAGCCAATATGCAGTAAGCTCTAGGCCAACCTG  300

seq1  AGCTTAAGACTATGTCTCAAGAAGCAAACCAAAACACAGCAAAAATTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAGACTATGTCTCAAGAAGCAAACCAAAACACAGCAAAAATTGGA  350

seq1  TGCTAGCACAAATTTCGAAATGGCTTCATTTCAGACTTGTGTAACCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCACAAATTTCGAAATGGCTTCATTTCAGACTTGTGTAACCTCTT  400

seq1  AACTGAATTTAAGAGTTCACCACAGTGATTTTTTTTTTTTCTTAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTTAAGAGTTCACCACAGTGATTTTTTTTTTTTCTTAGAAATG  450

seq1  ATCATGTTGCAGCGACGAAGGCCATACATAACTTTAGAACATGACACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTGCAGCGACGAAGGCCATACATAACTTTAGAACATGACACATG  500

seq1  TTTTACTTGTGGTATATAGGCTGTGTTTGATTGTACTTTCTCATTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGTGGTATATAGGCTGTGTTTGATTGTACTTTCTCATTTTCTA  550

seq1  TATATACTCTTATACATCATTAGATATGAGAAGTAAATACAAGACTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCTTATACATCATTAGATATGAGAAGTAAATACAAGACTCATA  600

seq1  CTATTTTATTACAGAAATGTAAAAAGGAAATTATTCACCTCTGTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATTACAGAAATGTAAAAAGGAAATTATTCACCTCTGTTTCAGA  650

seq1  TTTCATCCGTTGCCATAGCAAGCTATATGTTTCAAATCGAAGTTTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCGTTGCCATAGCAAGCTATATGTTTCAAATCGAAGTTTACTGT  700

seq1  CCTCAGAGTCAAGTTCCTCATTATTAAAATAATCCTCTAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGTCAAGTTCCTCATTATTAAAATAATCCTCTAAAAAAAAAAAA  750

seq1  ACCCAGAAAGTCAAGTTTTTTTAACACAATAAAATTAAGAGACTGTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAGTCAAGTTTTTTTAACACAATAAAATTAAGAGACTGTACAT  800

seq1  AGAGACAAACAGCATGGGAGAGGGGATTAAAACATTTTCTTTTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAACAGCATGGGAGAGGGGATTAAAACATTTTCTTTTTTTTTTT  850

seq1  CTTTTTTTGGGGTTTTTTTTTTTGTTTGTTTGTTTGTTTTGGTTTTTTCG  900
      |||||||||||||||||||||||||||| ||  |||||| |   ||||||
seq2  CTTTTTTTGGGGTTTTTTTTTTTGTTTGGTTTGTTGTTTGG---TTTTCG  897

seq1  AGACAAGGTTTCACTGTATCGCCCTGGCTGTCCAGGAACTCACTCTGTAA  950
      |||||  | |||||||| ||| |||||||||||||||||||||||||| |
seq2  AGACA--GGTTCACTGT-TCG-CCTGGCTGTCCAGGAACTCACTCTGT-A  942

seq1  ACCAGGCT-GGCCTCGAACTCAGAAATCCGCCTGCC-TCTGCTCAAAACA  998
      |||||||| ||||||||||| |||| ||   ||||| |||||||||||||
seq2  ACCAGGCTGGGCCTCGAACT-AGAATTC--GCTGCCTTCTGCTCAAAACA  989

seq1  TTTTCTATG-CCTCTATGCATCCAAAAACTATGTATCTACATATACAT-G  1046
       |||||||| ||||||||||||   ||||||||||||||||||||||| |
seq2  -TTTCTATGTCCTCTATGCATC---AAACTATGTATCTACATATACATGG  1035

seq1  TCTCCTTTACATTTGGAGAAAAACAATATAGTTTATCATTTGTATTTAA  1095
      ||||  |||||||    |||||||||| ||| |||||||   |||||||
seq2  TCTC--TTACATT---GGAAAAACAAT-TAGGTTATCATGATTATTTAA  1078