BAC Information

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BAC

Clone NameB6Ng01-162N12
Chromosome4 (Build37)
Map Location 123,395,086 - 123,504,534
singlet/doubletdoublet
Overlap geneNdufs5, 6330407G11Rik, Rhbdl2
Upstream genePpt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110
Downstream geneLOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N12.bB6Ng01-162N12.g
ACCDH955579DH955580
length1,0311,078
definitionDH955579|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N12, 5' end.DH955580|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,503,504 - 123,504,534)(123,395,086 - 123,396,167)
sequence
gaattcagagattacatgatgactctttttgatggaaaaatatgtttttc
ttttttaaaaaagaaaagaattgaggggggattgaggctggagagatgtc
tcagcaggtaaaagttcttgcctcaaaagcctgataacctacgactgatc
cctggaacccatgtaagaaaactggatacaggaatggatatctgcaatcc
cagaatttctataatgagactggaggcagtgacagggtgaaaggcagaaa
cctattctgcaagttgtcttctgccctccacatacacagcatgaacttat
gtgtgcatgcacatgtgagagcacccaaatacacacaaacacacagagac
aaatacaaaaagaaggggggaggggaaagaaagtaaactcaccggagacc
catttgcagggacaaagaatcttctgtagagagcaaatcccatgtctgac
gcaactagaagagaagacacccaatgaagcccaggatctcccaaatgggc
agagttttgttccccttgaccgtgtcttgctttactctgttgctgtacca
gttgctggtctccgagttttccctccatcgattcattagttctcataaga
gcttaatgaagtggacattatcagtaacctgcttatggatgtatcagtca
agcaagcaactaccctcatggtagacatacaacaaagagcagaccagatg
gccctgacttatggaggttactgtcctggtggaagagggagtgtatgcat
tgccaggtttgtttggctgatgcctgtaatcccagaactcaaaaagtaga
gtggccaacctcgttcactaccaagttccaggccagccagggctacagag
tgagacctccccgcctcccccaccagttttaaaaaaccaatcaacaaaca
aactaaaggcaatagtgtccctcgttgtgatgagtaccactaatgaaatt
acaaagaattgggggtgtgagattagactaccctttaaatactattcttt
aattagtccctgtgtggtgtgtgtgtgtgtg
gaattccagcctacacagagaaaccctgtctcaaaacaaaaacaaaaagg
agcgggatgtcagggtaggaaggaggccaaggcaggagtccggcagacgg
tggatttgctccggagggccgggggtgggggtgacgacctagttacgggg
tgaagggaaggcaggaggacacgcccagacctgggccacccacagagaga
ggaaatgtgtcaaggagctaatcctgaacgaaacttcttggctgtgcgga
cacagcagcgcctaccgcacctctgcagtgcccttgtcaggtccctggtg
caattcccgaccgccggctgcgggaggacgcagacgcctgccgtaaagga
cgcccgcagcacgacatctccagagcgacgccgtaaatcaaccaccggcc
gaggaactgtagaaaccaagcacagcgggtctgcgcctgcgcagcaagca
gcccagcctccagacgctgacagctgataaaccgactttccccatactac
tgcgcccggtagtgagttctccctttcagcactgtcgtgaccgttgattg
ttgtgctacttgagcaaggtcacactcgagaaagagtagtgcttccctca
ccccaaggaaatgtggtgattaaagctcgtgtgccgtgaccccaaaactt
gtgtgactgtttcccagtttcacggtggcagtttccctttttggtaataa
acataatagccgggctggagagacagctcagaggttaagagcatttgttg
atctgggagaggtcctcggttttactctagattcaggggacccaacatag
ttcttctacctcagcaataccaggagcacacaacatggtgcacatacatg
aagacaaaactctcgcacataaagtaatcttaaaagaaagatattagtgc
ctaacgtggtggctcaggctttaaatcacagaattaagaaacggaaacag
gtggatgtctattgagttctgggccaactaaggctacataggtgagatcc
tgttacaaacaaacagctttagagtactatagggacttcttttacctggt
gacttgatgaaaacgtcttgatgtttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123503504_123504534
seq2: B6Ng01-162N12.b_49_1079 (reverse)

seq1  CACACACACACACACACACACAGAGAACTAATTAAA-AATAGTATTTTAA  49
      ||||||||||||||| ||||||| | |||||||||| ||||||| |||||
seq2  CACACACACACACAC-CACACAG-GGACTAATTAAAGAATAGTA-TTTAA  47

seq1  AGGATAGTCTATTCTCAACACCCCCAATTCTTTGTATTTTCATT-GTGGT  98
      ||| ||||||| |||| ||||||||||||||||||| ||||||| |||||
seq2  AGGGTAGTCTAATCTC-ACACCCCCAATTCTTTGTAATTTCATTAGTGGT  96

seq1  ACTCATCACAACGA-GGACACTATTGCCTTTTGTTTGTTTGTTTGATTGG  147
      |||||||||||||| |||||||||||||||| ||||||||| ||||||||
seq2  ACTCATCACAACGAGGGACACTATTGCCTTTAGTTTGTTTG-TTGATTGG  145

seq1  TTTTTT-AAACTGGTGGGGGAGGCGGGGAGGTCTCACTCTGTAGCCCTGG  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAACTGGTGGGGGAGGCGGGGAGGTCTCACTCTGTAGCCCTGG  195

seq1  CTGGCCTGGAACTTGGTAGTGAACGAGGTTGGCCACTCTACTTTTTGAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGGAACTTGGTAGTGAACGAGGTTGGCCACTCTACTTTTTGAGT  245

seq1  TCTGGGATTACAGGCATCAGCC-AACAAACCTGGCAATGCATACACTCCC  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGGGATTACAGGCATCAGCCAAACAAACCTGGCAATGCATACACTCCC  295

seq1  TCTTCCACCAGGACAGTAACCTCCATAAGTCAGGGCCATCTGGTCTGCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACCAGGACAGTAACCTCCATAAGTCAGGGCCATCTGGTCTGCTC  345

seq1  TTTGTTGTATGTCTACCATGAGGGTAGTTGCTTGCTTGACTGATACATCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTATGTCTACCATGAGGGTAGTTGCTTGCTTGACTGATACATCC  395

seq1  ATAAGCAGGTTACTGATAATGTCCACTTCATTAAGCTCTTATGAGAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGGTTACTGATAATGTCCACTTCATTAAGCTCTTATGAGAACTA  445

seq1  ATGAATCGATGGAGGGAAAACTCGGAGACCAGCAACTGGTACAGCAACAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCGATGGAGGGAAAACTCGGAGACCAGCAACTGGTACAGCAACAG  495

seq1  AGTAAAGCAAGACACGGTCAAGGGGAACAAAACTCTGCCCATTTGGGAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCAAGACACGGTCAAGGGGAACAAAACTCTGCCCATTTGGGAGA  545

seq1  TCCTGGGCTTCATTGGGTGTCTTCTCTTCTAGTTGCGTCAGACATGGGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTTCATTGGGTGTCTTCTCTTCTAGTTGCGTCAGACATGGGAT  595

seq1  TTGCTCTCTACAGAAGATTCTTTGTCCCTGCAAATGGGTCTCCGGTGAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTACAGAAGATTCTTTGTCCCTGCAAATGGGTCTCCGGTGAGT  645

seq1  TTACTTTCTTTCCCCTCCCCCCTTCTTTTTGTATTTGTCTCTGTGTGTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTTTCCCCTCCCCCCTTCTTTTTGTATTTGTCTCTGTGTGTTT  695

seq1  GTGTGTATTTGGGTGCTCTCACATGTGCATGCACACATAAGTTCATGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTTGGGTGCTCTCACATGTGCATGCACACATAAGTTCATGCTG  745

seq1  TGTATGTGGAGGGCAGAAGACAACTTGCAGAATAGGTTTCTGCCTTTCAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGGAGGGCAGAAGACAACTTGCAGAATAGGTTTCTGCCTTTCAC  795

seq1  CCTGTCACTGCCTCCAGTCTCATTATAGAAATTCTGGGATTGCAGATATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTGCCTCCAGTCTCATTATAGAAATTCTGGGATTGCAGATATC  845

seq1  CATTCCTGTATCCAGTTTTCTTACATGGGTTCCAGGGATCAGTCGTAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTATCCAGTTTTCTTACATGGGTTCCAGGGATCAGTCGTAGGT  895

seq1  TATCAGGCTTTTGAGGCAAGAACTTTTACCTGCTGAGACATCTCTCCAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGCTTTTGAGGCAAGAACTTTTACCTGCTGAGACATCTCTCCAGC  945

seq1  CTCAATCCCCCCTCAATTCTTTTCTTTTTTAAAAAAGAAAAACATATTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCCCCCTCAATTCTTTTCTTTTTTAAAAAAGAAAAACATATTTT  995

seq1  TCCATCAAAAAGAGTCATCATGTAATCTCTGAATTC  1031
      ||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAAAAGAGTCATCATGTAATCTCTGAATTC  1031

seq1: chr4_123395086_123396167
seq2: B6Ng01-162N12.g_67_1144

seq1  GAATTCCAGCCTACACAGAGAAACCCTGTCTCAAAACAAAAACAAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTACACAGAGAAACCCTGTCTCAAAACAAAAACAAAAAGG  50

seq1  AGCGGGATGTCAGGGTAGGAAGGAGGCCAAGGCAGGAGTCCGGCAGACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGATGTCAGGGTAGGAAGGAGGCCAAGGCAGGAGTCCGGCAGACGG  100

seq1  TGGATTTGCTCCGGAGGGCCGGGGGTGGGGGTGACGACCTAGTTACGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGCTCCGGAGGGCCGGGGGTGGGGGTGACGACCTAGTTACGGGG  150

seq1  TGAAGGGAAGGCAGGAGGACACGCCCAGACCTGGGCCACCCACAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGGCAGGAGGACACGCCCAGACCTGGGCCACCCACAGAGAGA  200

seq1  GGAAATGTGTCAAGGAGCTAATCCTGAACGAAACTTCTTGGCTGTGCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTGTCAAGGAGCTAATCCTGAACGAAACTTCTTGGCTGTGCGGA  250

seq1  CACAGCAGCGCCTACCGCACCTCTGCAGTGCCCTTGTCAGGTCCCTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCGCCTACCGCACCTCTGCAGTGCCCTTGTCAGGTCCCTGGTG  300

seq1  CAATTCCCGACCGCCGGCTGCGGGAGGACGCAGACGCCTGCCGTAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCGACCGCCGGCTGCGGGAGGACGCAGACGCCTGCCGTAAAGGA  350

seq1  CGCCCGCAGCACGACATCTCCAGAGCGACGCCGTAAATCAACCACCGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCAGCACGACATCTCCAGAGCGACGCCGTAAATCAACCACCGGCC  400

seq1  GAGGAACTGTAGAAACCAAGCACAGCGGGTCTGCGCCTGCGCAGCAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGTAGAAACCAAGCACAGCGGGTCTGCGCCTGCGCAGCAAGCA  450

seq1  GCCCAGCCTCCAGACGCTGACAGCTGATAAACCGACTTTCCCCATACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCTCCAGACGCTGACAGCTGATAAACCGACTTTCCCCATACTAC  500

seq1  TGCGCCCGGTAGTGAGTTCTCCCTTTCAGCACTGTCGTGACCGTTGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCGGTAGTGAGTTCTCCCTTTCAGCACTGTCGTGACCGTTGATTG  550

seq1  TTGTGCTACTTGAGCAAGGTCACACTCGAGAAAGAGTAGTGCTTCCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTACTTGAGCAAGGTCACACTCGAGAAAGAGTAGTGCTTCCCTCA  600

seq1  CCCCAAGGAAATGTGGTGATTAAAGCTCGTGTGCCGTGACCCCAAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGAAATGTGGTGATTAAAGCTCGTGTGCCGTGACCCCAAAACTT  650

seq1  GTGTGACTGTTTCCCAGTTTCACGGTGGCAGTTTCCCTTTTTGGTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTGTTTCCCAGTTTCACGGTGGCAGTTTCCCTTTTTGGTAATAA  700

seq1  ACATAATAGCCGGGCTGGAGAGACAGCTCAGAGGTTAAGAGCATTTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAGCCGGGCTGGAGAGACAGCTCAGAGGTTAAGAGCATTTGTTG  750

seq1  ATCTGGGAGAGGTCCTCGGTTTAACTCTAGATTCAGGGGACCCAACATAG  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTGGGAGAGGTCCTCGGTTTTACTCTAGATTCAGGGGACCCAACATAG  800

seq1  TTCTTCTAACCTCAGCAATACCAGGAGCACAC-ACATGGTGCACATACAT  849
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTTCT-ACCTCAGCAATACCAGGAGCACACAACATGGTGCACATACAT  849

seq1  GAAGACAAAACTCTCGCACATAAAGTAAATCTTAAAAGAAAGATAATAGT  899
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GAAGACAAAACTCTCGCACATAAAGT-AATCTTAAAAGAAAGATATTAGT  898

seq1  GCCTAACGTGGTGGCTCAGGCCTTTAAATCACAGAAATTAAGAAACGGAA  949
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GCCTAACGTGGTGGCTCAGG-CTTTAAATCACAG-AATTAAGAAACGGAA  946

seq1  ACAGGTGGATGTCTA-TGAGTTCTAGGCCAACTAAGGCTACATA-GTGAG  997
      ||||||||||||||| |||||||| ||||||||||||||||||| |||||
seq2  ACAGGTGGATGTCTATTGAGTTCTGGGCCAACTAAGGCTACATAGGTGAG  996

seq1  ATCTTGTTACAAACAAACAGCTATAGAGTTACTATAGGGACTTCTTTATA  1047
      ||| |||||||||||||||||| ||||| ||||||||||||||||||   
seq2  ATCCTGTTACAAACAAACAGCTTTAGAG-TACTATAGGGACTTCTTTTAC  1045

seq1  CT-GTGACATGATGAAAACGTTCTTTGATGTATTAG  1082
      || ||||| ||||||||||||   ||||||| ||||
seq2  CTGGTGACTTGATGAAAACGT--CTTGATGT-TTAG  1078