BAC Information

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BAC

Clone NameB6Ng01-162P22
Chromosome4 (Build37)
Map Location 115,537,163 - 115,687,841
singlet/doubletdoublet
Overlap geneMknk1, Kncn, 6430628N08Rik, Dmbx1, Faah
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c
Downstream geneNsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P22.bB6Ng01-162P22.g
ACCDH955691DH955692
length1,0811,030
definitionDH955691|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P22, 5' end.DH955692|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,686,767 - 115,687,841)(115,537,163 - 115,538,187)
sequence
gaattctcctgccgggccctggcttccttggagaagaaaggcggcacctg
aggctgcctctgacgtctctcttctaatgccttctcagcccatccctgaa
tagcaaggggcacctggggagatcggacccagtgttctgggaggacaaag
cagtctggttcctctgataggtactatacaaagttagctgtgtgccaagt
ctggttcctctgataggtactatacaaagttagctgtgtgccaaggtaga
cacaggctagatggcaagtaggacatgagcatctctgagtcacaatggtt
tacacaatggtttacttttccagactctggagcagctctagggagaggtg
tatttctggttactgtagaacaatggaagtctatcaacaacaacctttct
cctactttccccagatacccaccaagtgagctttaaaaaaaaaatactac
ttttaaagttttttttttatttgtatgaatgttttgcctacatgtatgtt
tgtgcaccatgtgcatgcctggtacctacagagaccaaaggggcatgaaa
tcccctgtaaatgcagttatagaaggttatgagataccatgtgggattgt
gggaaccgaacccaggtcctctggaatagcagacagtactacaaacttct
aagccatctctccagcccccccccccattgtttctacactgcagacaaga
accacaagacatagactgttagctggaagagatgtcacaggacatgattc
ctgccccagggcctttgcacatgtggttttgttgaactgtctcatgcctt
ctcttggtaaagtttactgatcctacaaatgactctccctttcaccggga
tccattgcggctctgtctctggcccgtctccaagccttttctggtacgtt
ttctttgaaacgatttcttattggtgaattgaaagcatggttgcaccatt
aagaatttcttcaccatcgttgtgagcaagcggagacagctgaaacagac
aaaaagattaaaacccaagagtcttgaaattaggacactagatggttcag
gaaacggaaaaacagtttgaaagagaggagc
gaattctttgaagatgacacacggttttacttggtctttgagaaattgca
aggaggtatatcttgttgagtatgtgtttggactttggattaagacccag
ggtggtgatcatccatcatgaatcccagagacttctaaaatgagtcaagc
taataaaaaggatgaaggacttaaaaactgcccttggtttgggagaaggg
aggccggagggaaggatgataattagcattttgcagcgcttagaatgtca
cctgtgtggatagtctataaatgccttttcattagaataggagttctata
tagatactgttagtgatcaatttatcagtcccctgttttgacacattcac
tacgtaactaaattaattatgaagtggaagctttgacttacactgtgaag
tctagaaagactaaacagaggagaggagggccctattgtttggaacgcag
actcgggatacagggaaaaacaagaacataccagccttcaggtggaagga
agatccacctgccaccacactgctgtcactggagtgacccgtcccctccc
ttcccctctgtgcaccagatgaagggcacatttgcaagatgaaggctgca
ggaatgtgtggggctgaggaaggctgcgtagaaactaacaaagctaagct
gaagtcacactcgtcagcctcctgaccttggaaacatcggttagccttct
gcaaacagtattctcatctgtgaactagagctcttggtagcagctgcctc
agagggctgcagtggagatggaatgagaaagcattgaggagaagcactta
gcaccagggctgctaggcatgaagggatcaataagtgctggctgtgggca
ctatcagacaacggactggggctgagaagtctgtgaaatagtttcctgtc
ttgcttttaaataaattttataaataacaacagcaggcaaaactataata
aggttagcatgtgtcatttttaggactccaggaatgtacaccttcaggct
cagttgtaccgcccaataattgggcttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115686767_115687841
seq2: B6Ng01-162P22.b_48_1128 (reverse)

seq1  GCTCCTCTCT---CAACTGTTTCTCCCTCTCCTGAACCATCTAGTGTCCT  47
      ||||||||||    |||||||| ||| | |||||||||||||||||||||
seq2  GCTCCTCTCTTTCAAACTGTTTTTCCGTTTCCTGAACCATCTAGTGTCCT  50

seq1  AATTTC-AGACTCTTGGGTTTTTATCTTTTTTGTTCTGTTTTCAGCTGTC  96
      |||||| ||||||||||||||| ||||||||   |||| |||||||||||
seq2  AATTTCAAGACTCTTGGGTTTTAATCTTTTT--GTCTG-TTTCAGCTGTC  97

seq1  TCCGCTTGCTCACAACGATGGTGAAGATATTCTTAATGGTGCAACCATGC  146
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCGCTTGCTCACAACGATGGTGAAGAAATTCTTAATGGTGCAACCATGC  147

seq1  TTTCAATTCACCAATA--GAATCGTTTCAAAG-AAACGTACCAG-AAAGG  192
      ||||||||||||||||   ||||||||||||| ||||||||||| |||||
seq2  TTTCAATTCACCAATAAGAAATCGTTTCAAAGAAAACGTACCAGAAAAGG  197

seq1  CTTGGAGACGGGCCAGAGACAGAGCCGCAATGGAT-CCGGTG-AAGGGAG  240
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CTTGGAGACGGGCCAGAGACAGAGCCGCAATGGATCCCGGTGAAAGGGAG  247

seq1  AGTCATTTGTAGGATCAGTAAACTTTTACCAAGAGAAGGCATGAGACAGT  290
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTCATTTGTAGGATCAGTAAAC-TTTACCAAGAGAAGGCATGAGACAGT  296

seq1  TCAACAAAACCACATGTGCAAAGGCCCTGGGGCAGGAATCATGTCCTGTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACCACATGTGCAAAGGCCCTGGGGCAGGAATCATGTCCTGTG  346

seq1  ACATCTCTTCCAGCTAACAGTCTATGTCTTGTGGTTCTTGTCTGCAGTGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTCCAGCTAACAGTCTATGTCTTGTGGTTCTTGTCTGCAGTGT  396

seq1  AGAAACAATGGGGGGGGGGGCTGGAGAGATGGCTTAGAAGTTTGTAGTAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATGGGGGGGGGGGCTGGAGAGATGGCTTAGAAGTTTGTAGTAC  446

seq1  TGTCTGCTATTCCAGAGGACCTGGGTTCGGTTCCCACAATCCCACATGGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTATTCCAGAGGACCTGGGTTCGGTTCCCACAATCCCACATGGT  496

seq1  ATCTCATAACCTTCTATAACTGCATTTACAGGGGATTTCATGCCCCTTTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAACCTTCTATAACTGCATTTACAGGGGATTTCATGCCCCTTTG  546

seq1  GTCTCTGTAGGTACCAGGCATGCACATGGTGCACAAACATACATGTAGGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTAGGTACCAGGCATGCACATGGTGCACAAACATACATGTAGGC  596

seq1  AAAACATTCATACAAATAAAAAAAAAACTTTAAAAGTAGTATTTTTTTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCATACAAATAAAAAAAAAACTTTAAAAGTAGTATTTTTTTTT  646

seq1  TAAAGCTCACTTGGTGGGTATCTGGGGAAAGTAGGAGAAAGGTTGTTGTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCACTTGGTGGGTATCTGGGGAAAGTAGGAGAAAGGTTGTTGTT  696

seq1  GATAGACTTCCATTGTTCTACAGTAACCAGAAATACACCTCTCCCTAGAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTTCCATTGTTCTACAGTAACCAGAAATACACCTCTCCCTAGAG  746

seq1  CTGCTCCAGAGTCTGGAAAAGTAAACCATTGTGTAAACCATTGTGACTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGAGTCTGGAAAAGTAAACCATTGTGTAAACCATTGTGACTCA  796

seq1  GAGATGCTCATGTCCTACTTGCCATCTAGCCTGTGTCTACCTTGGCACAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTCATGTCCTACTTGCCATCTAGCCTGTGTCTACCTTGGCACAC  846

seq1  AGCTAACTTTGTATAGTACCTATCAGAGGAACCAGACTTGGCACACAGCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACTTTGTATAGTACCTATCAGAGGAACCAGACTTGGCACACAGCT  896

seq1  AACTTTGTATAGTACCTATCAGAGGAACCAGACTGCTTTGTCCTCCCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTATAGTACCTATCAGAGGAACCAGACTGCTTTGTCCTCCCAGA  946

seq1  ACACTGGGTCCGATCTCCCCAGGTGCCCCTTGCTATTCAGGGATGGGCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGTCCGATCTCCCCAGGTGCCCCTTGCTATTCAGGGATGGGCTG  996

seq1  AGAAGGCATTAGAAGAGAGACGTCAGAGGCAGCCTCAGGTGCCGCCTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATTAGAAGAGAGACGTCAGAGGCAGCCTCAGGTGCCGCCTTTC  1046

seq1  TTCTCCAAGGAAGCCAGGGCCCGGCAGGAGAATTC  1075
      |||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGGAAGCCAGGGCCCGGCAGGAGAATTC  1081

seq1: chr4_115537163_115538187
seq2: B6Ng01-162P22.g_68_1097

seq1  GAATTCTTTGAAGATGACACACGGTTTTACTTGGTCTTTGAGAAATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAGATGACACACGGTTTTACTTGGTCTTTGAGAAATTGCA  50

seq1  AGGAGGTATATCTTGTTGAGTATGTGTTTGGACTTTGGATTAAGACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTATATCTTGTTGAGTATGTGTTTGGACTTTGGATTAAGACCCAG  100

seq1  GGTGGTGATCATCCATCATGAATCCCAGAGACTTCTAAAATGAGTCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGATCATCCATCATGAATCCCAGAGACTTCTAAAATGAGTCAAGC  150

seq1  TAATAAAAAGGATGAAGGACTTAAAAACTGCCCTTGGTTTGGGAGAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAGGATGAAGGACTTAAAAACTGCCCTTGGTTTGGGAGAAGGG  200

seq1  AGGCCGGAGGGAAGGATGATAATTAGCATTTTGCAGCGCTTAGAATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGAGGGAAGGATGATAATTAGCATTTTGCAGCGCTTAGAATGTCA  250

seq1  CCTGTGTGGATAGTCTATAAATGCCTTTTCATTAGAATAGGAGTTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGATAGTCTATAAATGCCTTTTCATTAGAATAGGAGTTCTATA  300

seq1  TAGATACTGTTAGTGATCAATTTATCAGTCCCCTGTTTTGACACATTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTGTTAGTGATCAATTTATCAGTCCCCTGTTTTGACACATTCAC  350

seq1  TACGTAACTAAATTAATTATGAAGTGGAAGCTTTGACTTACACTGTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAACTAAATTAATTATGAAGTGGAAGCTTTGACTTACACTGTGAAG  400

seq1  TCTAGAAAGACTAAACAGAGGAGAGGAGGGCCCTATTGTTTGGAACGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGACTAAACAGAGGAGAGGAGGGCCCTATTGTTTGGAACGCAG  450

seq1  ACTCGGGATACAGGGAAAAACAAGAACATACCAGCCTTCAGGTGGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGATACAGGGAAAAACAAGAACATACCAGCCTTCAGGTGGAAGGA  500

seq1  AGATCCACCTGCCACCACACTGCTGTCACTGGAGTGACCCGTCCCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACCTGCCACCACACTGCTGTCACTGGAGTGACCCGTCCCCTCCC  550

seq1  TTCCCCTCTGTGCACCAGATGAAGGGCACATTTGCAAGATGAAGGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTGTGCACCAGATGAAGGGCACATTTGCAAGATGAAGGCTGCA  600

seq1  GGAATGTGTGGGGCTGAGGAAGGCTGCGTAGAAACTAACAAAGCTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGTGGGGCTGAGGAAGGCTGCGTAGAAACTAACAAAGCTAAGCT  650

seq1  GAAGTCACACTCGTCAGCCTCCTGACCTTGGAAACATCGGTTAGCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACACTCGTCAGCCTCCTGACCTTGGAAACATCGGTTAGCCTTCT  700

seq1  GCAAACAGTATTCTCATCTGTGAACTAGAGCTCTTGGTAGCAGCTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGTATTCTCATCTGTGAACTAGAGCTCTTGGTAGCAGCTGCCTC  750

seq1  AGAGGGCTGCAGTGGAGATGGAATGAGAAAGCATTGAGGAGAAGCACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGCAGTGGAGATGGAATGAGAAAGCATTGAGGAGAAGCACTTA  800

seq1  GCACCA-GGCTGCTAGGCATGAAGGGATCAATAAGTGCTGGCTGTGGGCA  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGGCTGCTAGGCATGAAGGGATCAATAAGTGCTGGCTGTGGGCA  850

seq1  CTATCAAGACAACGGACT-GGGCTGAGAAGTCTGTGAAATAGTTTTCCTG  898
      ||||| |||||||||||| ||||||||||||||||||||||| |||||||
seq2  CTATC-AGACAACGGACTGGGGCTGAGAAGTCTGTGAAATAG-TTTCCTG  898

seq1  TCTTGCTTTTTAAATAAA-TTTATAAATAACAAACAGCAGGGCAAAAACT  947
      |||||| ||||||||||| |||||||||||| |||||||||   ||||||
seq2  TCTTGC-TTTTAAATAAATTTTATAAATAAC-AACAGCAGG--CAAAACT  944

seq1  ATAATAA-GTAAGCATGGGTCATTTTTAGGAC-CCAGGAATG-ACACCTT  994
      ||||||| || |||||| |||||||||||||| ||||||||| |||||||
seq2  ATAATAAGGTTAGCATGTGTCATTTTTAGGACTCCAGGAATGTACACCTT  994

seq1  CA-GCCCAGTGG--ACGCCCAATACT--GGCTTCCA  1025
      || || |||| |   ||||||||| |  ||||||||
seq2  CAGGCTCAGTTGTACCGCCCAATAATTGGGCTTCCA  1030