BAC Information

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BAC

Clone NameB6Ng01-163G19
Chromosome4 (Build37)
Map Location 87,764,086 - 87,872,476
singlet/doubletdoublet
Overlap geneBC057079
Upstream geneSlc24a2, Mllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163G19.bB6Ng01-163G19.g
ACCDH956013DH956014
length7611,032
definitionDH956013|Mus musculus domesticus DNA, BAC clone: B6Ng01-163G19, 5' end.DH956014|Mus musculus domesticus DNA, BAC clone: B6Ng01-163G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,871,716 - 87,872,476)(87,764,086 - 87,765,117)
sequence
gaattcttaagggttttcgcaggtgatagggcttcgctggaacagaaact
ccattgctcacagcttggacaaatgaagaaagacaattttttgaactggc
ttcttatttcccattttaattaaaaagaaaaggttatcttagattgcctt
caacgggtctcaatcaattatctcctgtgtaacagtttctaccaagacac
tctgacagatccttagttctgggaatggcaatcagtgcatttagtggcat
tttataaaacagtgtatttaatcatgtggcttttaaacaaatgttttaat
tatattgtcagtagagaaataaaatgctgtatttttgccctaaaactaga
gctgctttaagagctgtggacctcaagaaacatcagccttttctctatct
ggttcaaaaaaatatcagaaatgtttacactaaataatctttgattctgt
attatctatatcattcttaaggtataatagttgacactgttggtcttccc
ccagtacacacaaagcagagaactgacttgtctggcttcagtgggagtga
atatgcctaatcctatggagacttgatgccccaggaagaggagataccct
gccaggacaccctctcagaggcaaaggagaattctgttgggggggggggg
gcaacatttgggatgtaaaaaccaaagttgaagaaatgaaaatatataat
ttgggggaaaagacataatatcccatattgggtagccacgtaggttggag
gggggttggta
gaattcaggttctttgtaaagccagtatgcatggatccttctaatgactg
agacatccctccagcctttgagagtatctttctgttcttttttcttttta
aattagtttcttaaatattgtctacagttgcttttgtctgacaatggcat
atctaagtaattaatgtctggccccttactgaaaatgatttctggtaaat
gaacctgggatggtgtgagtcagaccaaaggcaataaagaagaaaggcaa
ttagtgttagttgtagccagctgggaaaggcttcccagatgtgttgtgaa
aagaatttagtcttaagtagtgggagcatatagagggtagtccatgtggg
tgactgtctcaaatcaagtcacttgggagtgagcagattgtgagctcctg
ggactatttggaaaactccttcacctgggttgggattacagctgagaaaa
tgaaggtgaatggctaactgttgatagacagctcagaagctaggcataga
cttttacacttcatctgtaaggcagctgaaaaccttagagttctccacag
gccaagatgtagtagtagaaactgtttgaggagagccaatcagacagagg
tacagggagcacactccagctctgagagctccaagactgaccaggtactg
gagaaagcccagagggaaggagcgagtctcctagggtaaagggggatagt
aatgcggggctagaaccccagtgcactgtgactgagttcagagagtggtg
gtgaggggaaactgagaggaaggtgcactgcatggttagtagctcttctg
agagggaagagcaggcttgtttggacagctgatgtctgctgccttggaac
tcataggggcgagtttgggatttttggaagatctgggacttatgctagct
atgagttcccactgagggacaaggacagcctgagaggctggggtgtcaaa
aagtacggaggaaaaggggtccctctgtagagaattgctcctggtgtgtc
tgtgaaatactgccgggagacaaccacttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87871716_87872476
seq2: B6Ng01-163G19.b_46_806 (reverse)

seq1  TACCAACCCCCCTCCAACCTACGTGGCTACCCAATATGGGATATTATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCCCCCTCCAACCTACGTGGCTACCCAATATGGGATATTATGTC  50

seq1  TTTTCCCCCAAATTATATATTTTCATTTCTTCAACTTTGGTTTTTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCCAAATTATATATTTTCATTTCTTCAACTTTGGTTTTTACATC  100

seq1  CCAAATGTTGCCCCCCCCCCCCCAACAGAATTCTCCTTTGCCTCTGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTGCCCCCCCCCCCCCAACAGAATTCTCCTTTGCCTCTGAGAG  150

seq1  GGTGTCCTGGCAGGGTATCTCCTCTTCCTGGGGCATCAAGTCTCCATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGGCAGGGTATCTCCTCTTCCTGGGGCATCAAGTCTCCATAGG  200

seq1  ATTAGGCATATTCACTCCCACTGAAGCCAGACAAGTCAGTTCTCTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCATATTCACTCCCACTGAAGCCAGACAAGTCAGTTCTCTGCTTT  250

seq1  GTGTGTACTGGGGGAAGACCAACAGTGTCAACTATTATACCTTAAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTGGGGGAAGACCAACAGTGTCAACTATTATACCTTAAGAATG  300

seq1  ATATAGATAATACAGAATCAAAGATTATTTAGTGTAAACATTTCTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATAATACAGAATCAAAGATTATTTAGTGTAAACATTTCTGATAT  350

seq1  TTTTTTGAACCAGATAGAGAAAAGGCTGATGTTTCTTGAGGTCCACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAACCAGATAGAGAAAAGGCTGATGTTTCTTGAGGTCCACAGCT  400

seq1  CTTAAAGCAGCTCTAGTTTTAGGGCAAAAATACAGCATTTTATTTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCAGCTCTAGTTTTAGGGCAAAAATACAGCATTTTATTTCTCTA  450

seq1  CTGACAATATAATTAAAACATTTGTTTAAAAGCCACATGATTAAATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATATAATTAAAACATTTGTTTAAAAGCCACATGATTAAATACAC  500

seq1  TGTTTTATAAAATGCCACTAAATGCACTGATTGCCATTCCCAGAACTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAAAATGCCACTAAATGCACTGATTGCCATTCCCAGAACTAAG  550

seq1  GATCTGTCAGAGTGTCTTGGTAGAAACTGTTACACAGGAGATAATTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAGAGTGTCTTGGTAGAAACTGTTACACAGGAGATAATTGATT  600

seq1  GAGACCCGTTGAAGGCAATCTAAGATAACCTTTTCTTTTTAATTAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCGTTGAAGGCAATCTAAGATAACCTTTTCTTTTTAATTAAAATG  650

seq1  GGAAATAAGAAGCCAGTTCAAAAAATTGTCTTTCTTCATTTGTCCAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGAAGCCAGTTCAAAAAATTGTCTTTCTTCATTTGTCCAAGCT  700

seq1  GTGAGCAATGGAGTTTCTGTTCCAGCGAAGCCCTATCACCTGCGAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAATGGAGTTTCTGTTCCAGCGAAGCCCTATCACCTGCGAAAACC  750

seq1  CTTAAGAATTC  761
      |||||||||||
seq2  CTTAAGAATTC  761

seq1: chr4_87764086_87765117
seq2: B6Ng01-163G19.g_67_1098

seq1  GAATTCAGGTTCTTTGTAAAGCCAGTATGCATGGATCCTTCTAATGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTTTGTAAAGCCAGTATGCATGGATCCTTCTAATGACTG  50

seq1  AGACATCCCTCCAGCCTTTGAGAGTATCTTTCTGTTCTTTTTTCTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCCTCCAGCCTTTGAGAGTATCTTTCTGTTCTTTTTTCTTTTTA  100

seq1  AATTAGTTTCTTAAATATTGTCTACAGTTGCTTTTGTCTGACAATGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTCTTAAATATTGTCTACAGTTGCTTTTGTCTGACAATGGCAT  150

seq1  ATCTAAGTAATTAATGTCTGGCCCCTTACTGAAAATGATTTCTGGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTAATTAATGTCTGGCCCCTTACTGAAAATGATTTCTGGTAAAT  200

seq1  GAACCTGGGATGGTGTGAGTCAGACCAAAGGCAATAAAGAAGAAAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGGATGGTGTGAGTCAGACCAAAGGCAATAAAGAAGAAAGGCAA  250

seq1  TTAGTGTTAGTTGTAGCCAGCTGGGAAAGGCTTCCCAGATGTGTTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTAGTTGTAGCCAGCTGGGAAAGGCTTCCCAGATGTGTTGTGAA  300

seq1  AAGAATTTAGTCTTAAGTAGTGGGAGCATATAGAGGGTAGTCCATGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTAGTCTTAAGTAGTGGGAGCATATAGAGGGTAGTCCATGTGGG  350

seq1  TGACTGTCTCAAATCAAGTCACTTGGGAGTGAGCAGATTGTGAGCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTCAAATCAAGTCACTTGGGAGTGAGCAGATTGTGAGCTCCTG  400

seq1  GGACTATTTGGAAAACTCCTTCACCTGGGTTGGGATTACAGCTGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATTTGGAAAACTCCTTCACCTGGGTTGGGATTACAGCTGAGAAAA  450

seq1  TGAAGGTGAATGGCTAACTGTTGATAGACAGCTCAGAAGCTAGGCATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGAATGGCTAACTGTTGATAGACAGCTCAGAAGCTAGGCATAGA  500

seq1  CTTTTACACTTCATCTGTAAGGCAGCTGAAAACCTTAGAGTTCTCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACACTTCATCTGTAAGGCAGCTGAAAACCTTAGAGTTCTCCACAG  550

seq1  GCCAAGATGTAGTAGTAGAAACTGTTTGAGGAGAGCCAATCAGACAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATGTAGTAGTAGAAACTGTTTGAGGAGAGCCAATCAGACAGAGG  600

seq1  TACAGGGAGCACACTCCAGCTCTGAGAGCTCCAAGACTGACCAGGTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGCACACTCCAGCTCTGAGAGCTCCAAGACTGACCAGGTACTG  650

seq1  GAGAAAGCCCAGAGGGAAGGAGCGAGTCTCCTAGGGTAAAGGGGGATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCCAGAGGGAAGGAGCGAGTCTCCTAGGGTAAAGGGGGATAGT  700

seq1  AATGCGGGGCTAGAACCCCAGTGCACTGTGACTGAGTTCAGAGAGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGGGGCTAGAACCCCAGTGCACTGTGACTGAGTTCAGAGAGTGGTG  750

seq1  GTGAGGGGAAACTGAGAGGAAGGTGCACTGCATGGTTAGTAGCTCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGAAACTGAGAGGAAGGTGCACTGCATGGTTAGTAGCTCTTCTG  800

seq1  AGA-GGAAGAGCAGGCTTGTTTGGACAGCTGAGGTCTGCTGCCTTTGGAA  849
      ||| |||||||||||||||||||||||||||| |||||||||| ||||||
seq2  AGAGGGAAGAGCAGGCTTGTTTGGACAGCTGATGTCTGCTGCC-TTGGAA  849

seq1  CTCATAGGGGCGAGTTTGGAATTGTTGGAAGATCTGGGACTTAATGCTAG  899
      ||||||||||||||||||| ||| |||||||||||||||||| |||||||
seq2  CTCATAGGGGCGAGTTTGGGATTTTTGGAAGATCTGGGACTT-ATGCTAG  898

seq1  CTATGAGTTCCCACTGAGGGACAAGGACAGGCTGAGAGGCT-GGGTGTCA  948
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CTATGAGTTCCCACTGAGGGACAAGGACAGCCTGAGAGGCTGGGGTGTCA  948

seq1  GAAAGTACGGAGGAAAGGGGTGCCCTCTGTAGAGAAGTGTCTCAT-GTGT  997
       ||||||||||||||| |||  |||||||||||||| || ||| | ||||
seq2  AAAAGTACGGAGGAAAAGGGGTCCCTCTGTAGAGAATTG-CTCCTGGTGT  997

seq1  GTCTGGGAAAGACTGCCGGGGAGCAGCCACTTCCT  1032
      ||||| |||| |||||||||   || |||||||||
seq2  GTCTGTGAAATACTGCCGGGAGACAACCACTTCCT  1032