BAC Information

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BAC

Clone NameB6Ng01-163K14
Chromosome4 (Build37)
Map Location 143,919,550 - 144,085,437
singlet/doubletdoublet
Overlap geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3
Upstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150
Downstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K14.bB6Ng01-163K14.g
ACCDH956192DH956193
length1,100940
definitionDH956192|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K14, 5' end.DH956193|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,084,333 - 144,085,437)(143,919,550 - 143,920,478)
sequence
gaattcccttcagtgtataacttttccccttttgcttaaaaatttcaagt
ttgcttcaggataactcatcctgaaattaattttggttacataaatcaag
tactgagtccctgactacagctgaagagacaaacccctgggggtgggtga
aaggaatacacaagccactgagtagatgatttggctggttatagggtgtc
atttattttactcagctggtcttgccccttctgcccatctcagttgatgg
ttttatacaaactccaatttggatgtgatgaagaagggctgattactatg
agaactttctcaatggagtaaaagaaaagaggacacagaatgttgacttc
taaaagataaaaggtgtgactggagtgcagtaggcactaaaatatcataa
tacaaactgtgtgactgctatggccactctaacagctggagatgaggcta
cattggtaaacagagctagcaatcactcaataggtgagaaaaggaagcag
acactaccagacaaatcagagagagctctaccttgctgcctggacattcc
atttcactgaggtgggggtatggtgtaacactgaatgtcttagaagacct
gaggggccttaatggtccctgtccacagcttccctgaagttaaatctatc
ccttcttcacttactgcttcagacatattgtactttctgttcccaaacac
atatgtccctaggccacagtttactgtactgaaagcctgaaactctattc
cccacttatttcttaaataaaagaaataaatgaaagacttataaaagttt
ttcataaatgacatataagccatctagtctaacccttgctttaaagttct
caaggtttcatgggtcttataacttaatataaacaaaattggtttttgcc
ctctgtctcagtgttttcagaagagacaagtggtagaagacatttttgca
tcttctttagatcctatataataaataagtttctatggtcacctccaact
ctcacctgggagataataagccagttttgtgtttgcaactgttggtgcca
accatccaaaggaaaaaaatggactgagaattgtcggcattttggaccac

gaattctttaatcccagcacttgagaggcagaggcaggtagatctctgag
ttcaagggcagtctggcccaaaaagtcagttcctggacaaccagggctgt
taccccgagacacagtgttgaaaaatgaagcaaaggaaagggagagagaa
gcaatttcaccaattcatagatttttttcccctgtctttgccaggatcaa
tttgttgaaagcagaatatgggttaatttggcatatagcttttttccatc
ctctctgaaaggtgtttaatattgtttttgctataaggaatggggttctg
ttttgttttgttttttttcctggatgttcctttccaaagggatatcagat
tcagagtagcaaagtttggaaatggatgggacaatggtgaacatgaatga
ttgagagaggctccacatgatgcccgtaagggcagtttgcttttgagacc
accaaatagtgagtggaatggagtaaattcgggtctctaacgtggtcacc
atggaaacaggtgctgaagagttaaactcctcataagagagaccctgaaa
acacgttctcttttgatttttctccaggatcatctccctaaagatccatc
agaatggacttggaagccccacccactctcctgcagctggctgcacagtg
cacagtgaggaaggaggtgctgaccatctctgttctgcagaacctaccaa
tgaagctcttttccaccactattcaaggaggctgacattctgagaaaagc
aaagatgtttaaactccttggtggagtactggccctatcctagccttctt
gttgggttgctgatagataaacccaacttggagactttccaggctatact
ggagggagttgggacatggctgatacggattatcgtcccaggtaagccaa
ttaccatgtatggaaatctgggatagaagatcgtgtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144084333_144085437
seq2: B6Ng01-163K14.b_41_1140 (reverse)

seq1  GTGGTCCAAAATGCCGACAATTCTCAGTCCATTTTTTTTCCCTTTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||   | |||||||
seq2  GTGGTCCAAAATGCCGACAATTCTCAGTCCATTTTTTT---CCTTTGGAT  47

seq1  GGTTGGCACCAACAGTTGCAAAACACAAAACTAGGCTTATTATCTCCCAG  100
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GGTTGGCACCAACAGTTGC-AAACACAAAACT-GGCTTATTATCTCCCAG  95

seq1  GTGAGAGTTGGAGGTGACCAATAGAAACTTAATTTATTATATAGGATCTA  150
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GTGAGAGTTGGAGGTGACC-ATAGAAACTT-ATTTATTATATAGGATCTA  143

seq1  AAGAAGATGCAAAAATGTCTTCTACCACTTGTCTCTTCTG-AAACACTGA  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAAGATGCAAAAATGTCTTCTACCACTTGTCTCTTCTGAAAACACTGA  193

seq1  GACAGAGGGCAAAAACCAATTTTGTTTATATTAAGTTATAAGACCCATG-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACAGAGGGCAAAAACCAATTTTGTTTATATTAAGTTATAAGACCCATGA  243

seq1  AACCTTGAGAACTTTAAAGCAAGGGTTAGACTAGATGGCTTATATGTCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAGAACTTTAAAGCAAGGGTTAGACTAGATGGCTTATATGTCAT  293

seq1  TTATGAAAAACTTTTATAAGTCTTTCATTTATTTCTTTTATTTAAGAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAAACTTTTATAAGTCTTTCATTTATTTCTTTTATTTAAGAAAT  343

seq1  AAGTGGGGAATAGAGTTTCAGGCTTTCAGTACAGTAAACTGTGGCCTAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGAATAGAGTTTCAGGCTTTCAGTACAGTAAACTGTGGCCTAGG  393

seq1  GACATATGTGTTTGGGAACAGAAAGTACAATATGTCTGAAGCAGTAAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGTGTTTGGGAACAGAAAGTACAATATGTCTGAAGCAGTAAGTG  443

seq1  AAGAAGGGATAGATTTAACTTCAGGGAAGCTGTGGACAGGGACCATTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGATAGATTTAACTTCAGGGAAGCTGTGGACAGGGACCATTAAG  493

seq1  GCCCCTCAGGTCTTCTAAGACATTCAGTGTTACACCATACCCCCACCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCAGGTCTTCTAAGACATTCAGTGTTACACCATACCCCCACCTCA  543

seq1  GTGAAATGGAATGTCCAGGCAGCAAGGTAGAGCTCTCTCTGATTTGTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGGAATGTCCAGGCAGCAAGGTAGAGCTCTCTCTGATTTGTCTG  593

seq1  GTAGTGTCTGCTTCCTTTTCTCACCTATTGAGTGATTGCTAGCTCTGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTCTGCTTCCTTTTCTCACCTATTGAGTGATTGCTAGCTCTGTTT  643

seq1  ACCAATGTAGCCTCATCTCCAGCTGTTAGAGTGGCCATAGCAGTCACACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTAGCCTCATCTCCAGCTGTTAGAGTGGCCATAGCAGTCACACA  693

seq1  GTTTGTATTATGATATTTTAGTGCCTACTGCACTCCAGTCACACCTTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTATGATATTTTAGTGCCTACTGCACTCCAGTCACACCTTTTA  743

seq1  TCTTTTAGAAGTCAACATTCTGTGTCCTCTTTTCTTTTACTCCATTGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGAAGTCAACATTCTGTGTCCTCTTTTCTTTTACTCCATTGAGA  793

seq1  AAGTTCTCATAGTAATCAGCCCTTCTTCATCACATCCAAATTGGAGTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCATAGTAATCAGCCCTTCTTCATCACATCCAAATTGGAGTTTG  843

seq1  TATAAAACCATCAACTGAGATGGGCAGAAGGGGCAAGACCAGCTGAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCATCAACTGAGATGGGCAGAAGGGGCAAGACCAGCTGAGTAA  893

seq1  AATAAATGACACCCTATAACCAGCCAAATCATCTACTCAGTGGCTTGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGACACCCTATAACCAGCCAAATCATCTACTCAGTGGCTTGTGT  943

seq1  ATTCCTTTCACCCACCCCCAGGGGTTTGTCTCTTCAGCTGTAGTCAGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCACCCACCCCCAGGGGTTTGTCTCTTCAGCTGTAGTCAGGGA  993

seq1  CTCAGTACTTGATTTATGTAACCAAAATTAATTTCAGGATGAGTTATCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACTTGATTTATGTAACCAAAATTAATTTCAGGATGAGTTATCCT  1043

seq1  GAAGCAAACTTGAAATTTTTAAGCAAAAGGGGAAAAGTTATACACTGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACTTGAAATTTTTAAGCAAAAGGGGAAAAGTTATACACTGAAG  1093

seq1  GGAATTC  1105
      |||||||
seq2  GGAATTC  1100

seq1: chr4_143919550_143920478
seq2: B6Ng01-163K14.g_71_1000

seq1  GAATTCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTAGATCTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTAGATCTCTGAG  50

seq1  TTCAAGGGCAGTCTGGCCCAAAAAGTCAGTTCCTGGACAACCAGGGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGCAGTCTGGCCCAAAAAGTCAGTTCCTGGACAACCAGGGCTGT  100

seq1  TACCCCGAGACACAGTGTTGAAAAATGAAGCAAAGGAAAGGGAGAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCGAGACACAGTGTTGAAAAATGAAGCAAAGGAAAGGGAGAGAGAA  150

seq1  GCAATTTCACCAATTCATAGATTTTTTTCCCCTGTCTTTGCCAGGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCACCAATTCATAGATTTTTTTCCCCTGTCTTTGCCAGGATCAA  200

seq1  TTTGTTGAAAGCAGAATATGGGTTAATTTGGCATATAGCTTTTTTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAAGCAGAATATGGGTTAATTTGGCATATAGCTTTTTTCCATC  250

seq1  CTCTCTGAAAGGTGTTTAATATTGTTTTTGCTATAAGGAATGGGGTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAAGGTGTTTAATATTGTTTTTGCTATAAGGAATGGGGTTCTG  300

seq1  TTTTGTTTTGTTTTTTTTCCTGGATGTTCCTTTCCAAAGGGATATCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTTTTCCTGGATGTTCCTTTCCAAAGGGATATCAGAT  350

seq1  TCAGAGTAGCAAAGTTTGGAAATGGATGGGACAATGGTGAACATGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAGCAAAGTTTGGAAATGGATGGGACAATGGTGAACATGAATGA  400

seq1  TTGAGAGAGGCTCCACATGATGCCCGTAAGGGCAGTTTGCTTTTGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGGCTCCACATGATGCCCGTAAGGGCAGTTTGCTTTTGAGACC  450

seq1  ACCAAATAGTGAGTGGAATGGAGTAAATTCGGGTCTCTAACGTGGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAGTGAGTGGAATGGAGTAAATTCGGGTCTCTAACGTGGTCACC  500

seq1  ATGGAAACAGGTGCTGAAGAGTTAAACTCCTCATAAGAGAGACCCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACAGGTGCTGAAGAGTTAAACTCCTCATAAGAGAGACCCTGAAA  550

seq1  ACACGTTCTC-TTTGAATTTTCTCCAGGATCATCTCCCTAAAGATCCATC  599
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ACACGTTCTCTTTTGATTTTTCTCCAGGATCATCTCCCTAAAGATCCATC  600

seq1  AGAATGGACTTGGAAGCCCCACCCACTCTCCTGCAGCTGGCTGCACAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGACTTGGAAGCCCCACCCACTCTCCTGCAGCTGGCTGCACAGTG  650

seq1  CACAGTGAGGAAGGAGGTGCTGACCATCTCTGTTCTGCAGAACCTACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGGAAGGAGGTGCTGACCATCTCTGTTCTGCAGAACCTACCAA  700

seq1  TGAAGCTC-TTTCCACCACTATTCAAGGAGGCTGACATTCTGAGAAAAGC  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCTTTTCCACCACTATTCAAGGAGGCTGACATTCTGAGAAAAGC  750

seq1  AAAGATGATTAAACTCC-TGGTGGAGTACTGGCCCTATCCTAGCCTTCTT  797
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGATGTTTAAACTCCTTGGTGGAGTACTGGCCCTATCCTAGCCTTCTT  800

seq1  GTTGGGTTGCTGATAGATAAACCCAACTTGGAGACTTTCCAGGCTATACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTGCTGATAGATAAACCCAACTTGGAGACTTTCCAGGCTATACT  850

seq1  GGAGGGAGTTGGCACATGGCTGAAACGGAAGTATCGTCCCAGGTAAGCCA  897
      |||||||||||| |||||||||| |||| | |||||||||||||||||||
seq2  GGAGGGAGTTGGGACATGGCTGATACGG-ATTATCGTCCCAGGTAAGCCA  899

seq1  AATACCAGGTAGGGAAATCTGGGATTAGAAGA  929
      | ||||| ||| |||||||||||| |||||||
seq2  ATTACCATGTATGGAAATCTGGGA-TAGAAGA  930