BAC Information

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BAC

Clone NameB6Ng01-163L06
Chromosome4 (Build37)10 (Build37)
Map Location 25,831,993 - 25,832,37487,424,088 - 87,425,201
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L06.bB6Ng01-163L06.g
ACCDH956222DH956223
length5861,115
definitionDH956222|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L06, 5' end.DH956223|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,831,993 - 25,832,374)(87,424,088 - 87,425,201)
sequence
gaattcagcaattttgttcttatagaaggaatggggtaaaataaatgata
acgttcttcctaagatgtgaaaatttttatttttatgatttacaactaag
acattctttcatctttaattatcctttgaatctctatcaattttttaatt
agatattttctttatttacatttcaaatgttatcccctttcctagtttct
cctcgtaaaatccccccccccccccccccacaattcacccactactgctt
cctggcccaggcattccccgatactggggcataaaaccttcacaggacca
aggacctctcctcccattgatgactgactaggccatcctctgctacatat
gcagctagagtccctctgtgtgttttctttgattggtggtttagtcccag
ggagttctggggttactggttagttcatattgttgttcctcctagggggc
tgcaaatcccttcagctccttgggtactttctctagctcctttattgggg
accctgtgctctgtctaatggatgactgtgagcatccacttctgtattag
tcaggcactggcagagcctctcaggagacagctata
gaattcttgacttgtagtcatacaattcacacacaaaccagaggagttat
ttatgtattcaacatggatgaatcgtcaatggaactacatagtgtgtagc
tgtgtagttcatttatataaagttcaaagctaggtaacaaacctatggag
atagaagttagatgtttgtcccatggagaagacagaaactgtacagaggg
cattagggaataagtgaagtttcgcccctgtgtaacacactatggctttt
taaagattcattatgatagtgtcttgctatataactcaggacttcctgga
acctgtaatcctcctgtctcagccttttgaatactacaattataggtctg
cactaccaatcccagccttaaaatggactgtaggttctcctagaggaact
cagagttatctagagaaataaaaccattagcctgaacatatattattcag
aagattcattatattgctgtacagggtatgggctggatagtccaacaatg
gttgtctccaggctagagagcctgaaacctggtaggaactcagcactcag
agtctggtgtggagacctgagagagtcccgggaaaaccaaagatcctcag
cccatattgaaagggagaagctgcattcgggagccaatgaaaggtggtag
ccttagcagaaacagcagcaacatagacactctgaccaccaagaagcaaa
gatgagcagatcatagcagccctgtctttctgtgagacctctttatatgt
gatgatcaaacagaagatactacctattctgaaggaggactcttcccagt
ttacttactcatcccaagaaataccctcattggatgcctccagagacaaa
gctcttagttgatcccagatccaatgaagttgagcaccaaccttccacaa
tttgtatcttaacatgtgagatagttctatggggtgggttcagagcagta
aaacatttctcagtgatacactttaagtttgtgttttgtgtatttgtaat
acagtaatataaaacaaagaagacccatgcaaaaataaatttaattctct
tgactaatggtgaagataaattaggccaaaaagaataatcctggcctcat
gtgagctttaatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25831993_25832374
seq2: B6Ng01-163L06.b_194_631 (reverse)

seq1  TATAGCTGTCTCCTGAG---------------------------------  17
      |||||||||||||||||                                 
seq2  TATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACTAATACAGAAGTG  50

seq1  ---------AGACATC--------------------------------AG  26
               || ||||                                ||
seq2  GATGCTCACAGTCATCCATTAGACAGAGCACAGGGTCCCCAATAAAGGAG  100

seq1  CTGAAGAAAGGATCCAAGGAACTGAAGGGGTTTGCAGCCCCATAGGAGGA  76
      ||  |||||| | ||||||| |||||||| ||||||||||| ||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTGAAGGGATTTGCAGCCCCCTAGGAGGA  150

seq1  ACAACAATATGAACCAACCAGT-ACCCCATAGCTCCCAGGAACTAAACGA  125
      |||||||||||||| ||||||| |||||| | ||||| || ||||||| |
seq2  ACAACAATATGAACTAACCAGTAACCCCAGAACTCCCTGGGACTAAACCA  200

seq1  TCAATCAAAGAGTACACATGGTGTGGCTCATGGCTTCAGCTGCATATGTA  175
       ||||||||||  |||||  | | | |||        |||||||||||||
seq2  CCAATCAAAGAAAACACACAGAGGGACTC-------TAGCTGCATATGTA  243

seq1  GCAGAGGATGGCCTTGTCAGTCATCAATGGGAGGAGAAGCCTTTGGTCCT  225
      |||||||||||||| |||||||||||||||||||||| | | ||||||||
seq2  GCAGAGGATGGCCTAGTCAGTCATCAATGGGAGGAGAGGTCCTTGGTCCT  293

seq1  GTGAAGGCTCTATGCCCCAGTGTACAGAAATGCCAGGGCCAGGAAG-GGG  274
      ||||||| | ||||||||||| |   | |||||| |||||||||||  | 
seq2  GTGAAGGTTTTATGCCCCAGTATCGGGGAATGCCTGGGCCAGGAAGCAGT  343

seq1  AGTGGGTG-GTTGGGGGAGCAGGGGAAGGGGGAGAGGATAGGGGATCTTT  323
      ||||||||  ||| |||    ||||  |||||        |||||| |||
seq2  AGTGGGTGAATTGTGGG----GGGGGGGGGGG--------GGGGAT-TTT  380

seq1  TGGAGGTGAAATTAGGAAAGGGGAATAACATTTGAAATGTAAATAAAGAA  373
        |||| |||| ||||||||||| ||||||||||||||||||||||||||
seq2  ACGAGGAGAAACTAGGAAAGGGG-ATAACATTTGAAATGTAAATAAAGAA  429

seq1  AATACCTAA  382
      |||| ||||
seq2  AATATCTAA  438

seq1: chr10_87424088_87425201
seq2: B6Ng01-163L06.g_70_1184

seq1  GAATTCTTGACTTGTAGTCATACAATTCACACACAAACCAGAGGAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTTGTAGTCATACAATTCACACACAAACCAGAGGAGTTAT  50

seq1  TTATGTATTCAACATGGATGAATCGTCAATGGAACTACATAGTGTGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATTCAACATGGATGAATCGTCAATGGAACTACATAGTGTGTAGC  100

seq1  TGTGTAGTTCATTTATATAAAGTTCAAAGCTAGGTAACAAACCTATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTTCATTTATATAAAGTTCAAAGCTAGGTAACAAACCTATGGAG  150

seq1  ATAGAAGTTAGATGTTTGTCCCATGGAGAAGACAGAAACTGTACAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTTAGATGTTTGTCCCATGGAGAAGACAGAAACTGTACAGAGGG  200

seq1  CATTAGGGAATAAGTGAAGTTTCGCCCCTGTGTAACACACTATGGCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGAATAAGTGAAGTTTCGCCCCTGTGTAACACACTATGGCTTTT  250

seq1  TAAAGATTCATTATGATAGTGTCTTGCTATATAACTCAGGACTTCCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCATTATGATAGTGTCTTGCTATATAACTCAGGACTTCCTGGA  300

seq1  ACCTGTAATCCTCCTGTCTCAGCCTTTTGAATACTACAATTATAGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAATCCTCCTGTCTCAGCCTTTTGAATACTACAATTATAGGTCTG  350

seq1  CACTACCAATCCCAGCCTTAAAATGGACTGTAGGTTCTCCTAGAGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCAATCCCAGCCTTAAAATGGACTGTAGGTTCTCCTAGAGGAACT  400

seq1  CAGAGTTATCTAGAGAAATAAAACCATTAGCCTGAACATATATTATTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTATCTAGAGAAATAAAACCATTAGCCTGAACATATATTATTCAG  450

seq1  AAGATTCATTATATTGCTGTACAGGGTATGGGCTGGATAGTCCAACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATTATATTGCTGTACAGGGTATGGGCTGGATAGTCCAACAATG  500

seq1  GTTGTCTCCAGGCTAGAGAGCCTGAAACCTGGTAGGAACTCAGCACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCCAGGCTAGAGAGCCTGAAACCTGGTAGGAACTCAGCACTCAG  550

seq1  AGTCTGGTGTGGAGACCTGAGAGAGTCCCGGGAAAACCAAAGATCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTGTGGAGACCTGAGAGAGTCCCGGGAAAACCAAAGATCCTCAG  600

seq1  CCCATATTGAAAGGGAGAAGCTGCATTCGGGAGCCAATGAAAGGTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTGAAAGGGAGAAGCTGCATTCGGGAGCCAATGAAAGGTGGTAG  650

seq1  CCTTAGCAGAAACAGCAGCAACATAGACACTCTGACCACCAAGAAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAGAAACAGCAGCAACATAGACACTCTGACCACCAAGAAGCAAA  700

seq1  GATGAGCAGATCATAGCAGCCCTGTCTTTCTGTGAGACCTCTTTATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCAGATCATAGCAGCCCTGTCTTTCTGTGAGACCTCTTTATATGT  750

seq1  GATGATCAAACAGAAGATACTACCTATTCTGAAGGAGGACTCTTCCCAG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGATCAAACAGAAGATACTACCTATTCTGAAGGAGGACTCTTCCCAGT  800

seq1  TTACTTACTCATTCCAAGAAATACCCTCA-TGGATGCCTCCAGAGACAAA  848
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TTACTTACTCATCCCAAGAAATACCCTCATTGGATGCCTCCAGAGACAAA  850

seq1  GCTCTTAGTTGATCCCAGATCCAATGAAGTTGAGCACCAACCTT-CACAA  897
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTCTTAGTTGATCCCAGATCCAATGAAGTTGAGCACCAACCTTCCACAA  900

seq1  TTTGTATCTTAACATGTGAGATAGTTCTAT-GGGTGGGTTCAGAGCAGTA  946
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGTATCTTAACATGTGAGATAGTTCTATGGGGTGGGTTCAGAGCAGTA  950

seq1  AAACATTTCTCAAGTGATACACTTAAGTTTTGTGTTTTATTGTATATGTT  996
      ||||||||||| |||||||||||| |  ||||||||||  ||||| ||| 
seq2  AAACATTTCTC-AGTGATACACTTTAAGTTTGTGTTTT-GTGTATTTGT-  997

seq1  AAATACAGTAATATAAAACAAAGAAGAACCATGC-AAAATAAATTTAATT  1045
       |||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  -AATACAGTAATATAAAACAAAGAAGACCCATGCAAAAATAAATTTAATT  1046

seq1  CTTCTTGACTAAT-GTGACAGAT--ATTTAGCCAAAAAGAATAATCCTGG  1092
      | ||||||||||| |||| ||||  |||  ||||||||||||||||||||
seq2  C-TCTTGACTAATGGTGA-AGATAAATTAGGCCAAAAAGAATAATCCTGG  1094

seq1  CCCTCATGTGACTTTTAATCTG  1114
       ||||||||||  |||||||||
seq2  -CCTCATGTGAGCTTTAATCTG  1115