BAC Information

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BAC

Clone NameB6Ng01-164A21
Chromosome4 (Build37)13 (Build37)
Map Location 143,454,401 - 143,455,02150,807,185 - 50,807,941
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433
Downstream geneLOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164A21.bB6Ng01-164A21.g
ACCDH956483DH956484
length1,089907
definitionDH956483|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A21, 5' end.DH956484|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,454,401 - 143,455,021)(50,807,185 - 50,807,941)
sequence
gaattctctggtggaatttttagggtcacttatatatactatcatatcat
ctgcaaaaagtgatgttttgtcttcttcttttccaatttgtatccccttg
atctccttttgttttcgaattgctctggcaaggacttcaggtaaaatgtt
gaataggtagggagaaagaagacagccttgtgtagtccctgattttagtg
ggattgcttccagcttctcaccatttacttcgatgttggctactggtttg
ctgtagattgctttgatcatatttaggtatgggccttaaattcctgatct
ttccaagacttttatcatgaatggatgttggattttgtcaaatgctttcc
ccgagtctaacgagatgatcatgtggtctttgtctttgagtttgtttata
taatggattacgttggtggatttccatatattaaacaatctctgcatccc
tggaataaaataaaataaaataaaataaagtgaataaaataaaataaata
aataaattaaattaaattaaattaaataaataaaataaaacctacctttt
cgggatggatgaatgttttgatatgttcttagttttggttagcgagaatt
ttattgagtatttttgcatctatattcatatgggaaacttgtctgaagtt
ctctatctttgttggatctttctgtggtttaggtatcagagtaattgtga
cttcatatattaactggtatctttggtattttccaacaatgccctcccca
cttccttgagtttgtggtttcttcctttaaatacccctttacccagctac
ttggggcaccacagtcctctaccctgagtggtgtatgaccatgggcccga
gagcgctcttgaattgaaagtcctcttgcagattgcagcaagacggattc
tcatgagtgatttggggtgttgcctctcctgagtcagaaagggggggagt
cctcacattgtgggtctttcatttggtgcatttgccgggatcacgactac
ccctcacacctgggaacaacttggaaggaacgggaatccctcttgttggc
atgccggtagtgtctctgttgagatgctcgttttctgaa
gaattctacgtaactaaggggtcatgtcctattatttggcaatgtacccg
gttcattctgaggttgttccaggaggcccttatctcaaaaatgttcttgg
aacagtctttagttgggagggtttgaactctagggtgaggagttcaggaa
tgcattctggggtgaagagttcaggagtgttctgggaacaatctctagat
gggaggggtcgggctctggggtgaggaagagttcagtaattttttatctt
tattcttcattccccactccttttagaaaatagctctaatcttagagcga
gtttttaacctcttggaggacccgatattgttgccttagtaccataacct
gtactgcatttatcctttttctaataaaagctaccaacttattaaggatg
caggggccaaaagtaagtaaaagcataagtgtaattaaaggtcttgctat
ggtggagaggagagtggtgagccaaggggacttattaaaccagctttcga
accatccttgttggctttctctttctcttttacgtatatctaggcgttct
ctaattttggccatagaatctttgattactcctgaatggtcaacataaaa
acaacattcttcttttagggcagcacagatctccttctttaaggaataat
aagtctaatccccttctattctgtagcaccacttcggacagggaagttaa
agattcttctaatttggttatagactgttctatagttctaagatcaacat
ccatagctgcacgtagttcttcatagtattggggggtcttaattaaagca
gcggttcctgtacctactccagccgctactcccatcctagtagaactgcc
aaagttaaggtaacgggttctcttctccagcggacccgatgctcaaattt
gtctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143454401_143455021
seq2: B6Ng01-164A21.b_516_1133

seq1  AAAATAAAGTGAATAAAATAAAATAAATAAATAAATTAAATTAAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGTGAATAAAATAAAATAAATAAATAAATTAAATTAAATTAAA  50

seq1  TTAAATAAATAAAATAAAACCTACCTTTTCGGGATGGATGAATGTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATAAAATAAAACCTACCTTTTCGGGATGGATGAATGTTTTGA  100

seq1  TATGTTCTTAGTTTTGGTTAGCGAGAATTTTATTGAGTATTTTTGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTTAGTTTTGGTTAGCGAGAATTTTATTGAGTATTTTTGCATCT  150

seq1  ATATTCATATGGGAAACTTGTCTGAAGTTCTCTATCTTTGTTGGATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATATGGGAAACTTGTCTGAAGTTCTCTATCTTTGTTGGATCTTT  200

seq1  CTGTGGTTTAGGTATCAGAGTAATTGTGACTTCATATATTAACTGGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTTAGGTATCAGAGTAATTGTGACTTCATATATTAACTGGTATC  250

seq1  TTTGGTATTTTCCAACAATGCCCTCCCCACTTCCTTGAGTTTGTGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTTTCCAACAATGCCCTCCCCACTTCCTTGAGTTTGTGGTTTC  300

seq1  TTCCTTTAAATACCCCTTTACCCAGCTACTTGGGGCACCACAGTCCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAATACCCCTTTACCCAGCTACTTGGGGCACCACAGTCCTCTA  350

seq1  CCCTGAGTGGTGTATGACCATGGGCCCGAGAGCGCTCTTGAATTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTGGTGTATGACCATGGGCCCGAGAGCGCTCTTGAATTGAAAGT  400

seq1  CCTCTTGCAGATTGCAGCAAGACGGATTCTCATGAGTGATTTGGGGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAGATTGCAGCAAGACGGATTCTCATGAGTGATTTGGGGTGTT  450

seq1  GCCTCTCCTGAGTCAGAAGGTGGGGGAGTCCTCACATTGTGGGTCTTTCA  500
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GCCTCTCCTGAGTCAGAAAGGGGGGGAGTCCTCACATTGTGGGTCTTTCA  500

seq1  TTTGGTGCATTTGCCGGGAATCACGACTACCCCTCACACCTGGGAACCAA  550
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TTTGGTGCATTTGCCGGG-ATCACGACTACCCCTCACACCTGGGAA-CAA  548

seq1  CTTGG-AGGAACGGGGATCCCCTCTTGTGTGCATGCCGGTAGTGTCTCTG  599
      ||||| ||||||||| || |||||||||  ||||||||||||||||||||
seq2  CTTGGAAGGAACGGGAAT-CCCTCTTGTTGGCATGCCGGTAGTGTCTCTG  597

seq1  TTTTGAGTGTCTGTTTTCTGAA  621
      ||  || ||   ||||||||||
seq2  TTGAGA-TGCTCGTTTTCTGAA  618

seq1: chr13_50807185_50807941
seq2: B6Ng01-164A21.g_64_818

seq1  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCG  50

seq1  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGG  100

seq1  AACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGATGAGGAGTTCAGGAA  150
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AACAGTCTTTAGTTGGGAGGGTTTGAACTCTAGGGTGAGGAGTTCAGGAA  150

seq1  TGCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGAT  200

seq1  GGGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTT  250

seq1  TATTCTTCATTCCCCACTCCTTTTAGAAAATAGCTCTAATCTTAGAGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCATTCCCCACTCCTTTTAGAAAATAGCTCTAATCTTAGAGCGA  300

seq1  GTTTTCAACCTCTTGGAGGACCCGATATTGTTGCCTTAGTACCATAACTT  350
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTTAACCTCTTGGAGGACCCGATATTGTTGCCTTAGTACCATAACCT  350

seq1  GTACTGCATTTATCCTTTCTCTAATAAAAGCTACCAACTTATTAAGGATG  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTACTGCATTTATCCTTTTTCTAATAAAAGCTACCAACTTATTAAGGATG  400

seq1  CAGGGGCCAAAAGTAAGCAAAAGCATAAGTGTAATTAAAGGTCCTGCTAT  450
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  CAGGGGCCAAAAGTAAGTAAAAGCATAAGTGTAATTAAAGGTCTTGCTAT  450

seq1  GGTGGAGAGGAGAGTGGTGAGCCAAGGGGACTTATTAAACCAGCTTTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGGAGAGTGGTGAGCCAAGGGGACTTATTAAACCAGCTTTCGA  500

seq1  ACCATCCTTGTTGGCTTTCTCTTTCTCTTTTACGTATATCTAGGCGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTTGTTGGCTTTCTCTTTCTCTTTTACGTATATCTAGGCGTTCT  550

seq1  CTAAGTTTGGCCATAGAATCTTTGATTACTCCTGAATGGTCAACATAAAA  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGGCCATAGAATCTTTGATTACTCCTGAATGGTCAACATAAAA  600

seq1  ACAACATTCTTCTTTTAGGGCAGCACAGAGTCCTCCTTCTTTAAGGAATA  650
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  ACAACATTCTTCTTTTAGGGCAGCACAGA--TCTCCTTCTTTAAGGAATA  648

seq1  ATAAGTCTAATCCCCTTCTATTCTGTAGCACCACTTCGGACAGGGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTAATCCCCTTCTATTCTGTAGCACCACTTCGGACAGGGAAGTT  698

seq1  AAAGATTCTTCTAATTTGGTTATAGACTGTTCTATAGTTCTAAGATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTTCTAATTTGGTTATAGACTGTTCTATAGTTCTAAGATCAAC  748

seq1  ATCCATA  757
      |||||||
seq2  ATCCATA  755