BAC Information

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BAC

Clone NameB6Ng01-164K24
Chromosome4 (Build37)
Map Location 12,855,517 - 13,017,839
singlet/doubletdoublet
Overlap geneOTTMUSG00000004461
Upstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneLOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164K24.bB6Ng01-164K24.g
ACCDH956943DH956944
length1,2351,093
definitionDH956943|Mus musculus domesticus DNA, BAC clone: B6Ng01-164K24, 5' end.DH956944|Mus musculus domesticus DNA, BAC clone: B6Ng01-164K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,016,595 - 13,017,839)(12,855,517 - 12,856,604)
sequence
gaattctttgtttgtttgtttttttaacaaatgaaagtataattccaagc
tgctttgtctgtaattccttctgcatggctagaagttagtgatgcagatg
gttctgaaattcaaatataatgcaaaagatgctcttcatctcaatccttt
gaattcatatttaatgtattgaagaattagcataagtggactgcttccaa
agtcatacatgtcatacatgaaaatggcatgaaatttgatttccttggct
ttgtcttacatccctaaagccttctcccagcattttgactataagcagca
gtactgtttgtcacttccgagagacatgagggccttcgaccctgctccgc
catttccactgtgcactctcacagaagatgtgccttgagcagctatacct
gtactgtgcggtaccgagggatacataattgcatttaatagaacgtgccc
ctgtttgcaagacatacttgatttaaagccacttacagtttaaagctttg
gggagatgtaattaaattttacagaagccacagcttttaaatgaagacac
atgatctgtgcgcatgtgtgcaaacatatacacatatgcagtcaaaatgg
gaacttctaaacactggtcttctacaactatttatttcataacttaaaat
ataagacactattattcaaatattatgaaggttgctcctatttcatataa
taggtccagctataaaagtgtatcaaagataattactctttatactatga
tattccaaaagtggcttattgactgaattgacaaacattatttcaatgta
tattactatttttgaggcatgtctgttctatatttgacttatatttcctg
ttgccatcacaagtacatagaggaatgctttgatagatcatgcatatgta
ggtttttttcaattcctaatatggccaaacacccttataaaatgatacat
tgtaatttaaataatcaaaataaaatggacatgctggcattaagttcaca
gttgaaatcacctatatatgtttctttttgaactatttttttagatacaa
ctggtaattgattcataaaatccagctgaatatgctattttttataaaaa
aggtggaggcgaatctagtaaaaaatctggccataaacatctcttctcct
tacttgaattacggtcagagaccgttaaatttccttactgaatgcttcag
tttttactagtaacaattcgattaatactcggaaa
gaattctttcagttccactcctttgcctgtagatttcaggatgtgctttt
taaacagctgagtaatagtgcattgtgtaaagcacatgcttattaaagga
caaggctgggcagacactgtgtcttgcgatatcactataggagtgacagc
ataaaaagattgaaataaaatatacttatgaactatactaatagaactgg
tttcatgggagggagcctttattcgatgagacccagtttgtatttcctga
tgactaatattataatataatttggctttagtattaaaattattttctaa
gcatcacttttgtttttaaatgtgtaaattacttttcccttttttattga
attcagaaaacattttgaattcctgtgcttgcagcttctcatttttgaac
attagctattgttattctgttagtttactgaggcaaatagcaaactattg
ataatctcttttgcaaatatcccatacagcccagcgcagatgtcagacat
ttgcctttttggtagattggatcatcactgacctgactagcgatggagac
tttctcatatttacttggacttttaaatttctataactgactctttgacc
aagatttaatatgttgatgggactggatcagtcccacaaggataatatcc
atcttttaacatcatctgatgtgggaacttcattggagcttgatgtgcct
tgtgctatttacacatagcataaccacagaatctcctcatagctacggga
tttacccatgtacaaagtgaggatgaggaggcaattaaactacacataat
atagacaacacataacagtaaatttttaaggagaaaatcgtttacttaaa
tttttaattttaaaaatttttctacatgaatattgtatttatattacttc
cattccttttcccctcccctcaacttctctccttgtacccaagccccatt
caaatctatgacttatttattattgtatatgttatatatcataatccatc
tataatttataacaaatatatttttaaacttgtatatattacatgcatta
ttatatgatattgtgacatctatacacgccatattagatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13016595_13017839
seq2: B6Ng01-164K24.b_44_1278 (reverse)

seq1  TTTCAGAGTATTAATTGATATTGTTTTTTCTTTCAGTAAAAAATTTAAAA  50
      |||| |||||||||| || ||||||  |      ||||||||   | || 
seq2  TTTCCGAGTATTAATCGA-ATTGTTACT------AGTAAAAA--CTGAAG  41

seq1  CAATCAAATTAAAAGAAATATTAACAGTTTACTTAACCCTAAATCAAGTT  100
      || |||     || ||||| ||||| || |   | ||| ||| |||||| 
seq2  CATTCA---GTAAGGAAAT-TTAACGGTCT--CTGACCGTAATTCAAGTA  85

seq1  AAGAGAAAGAGATGGTTTATGG-CAGATTTTTTTACTTGATTCGCCT-CA  148
      | ||| ||||||| |||||||| |||| ||||||||| ||||||||| ||
seq2  AGGAG-AAGAGAT-GTTTATGGCCAGA-TTTTTTACTAGATTCGCCTCCA  132

seq1  CATTTTTATTAAAAAATAGCATATTCAACTGGATTTTATGATTC-ATTAA  197
      | |||||  |||||||||||||||||| ||||||||||||| || |||| 
seq2  CCTTTTTTATAAAAAATAGCATATTCAGCTGGATTTTATGAATCAATTAC  182

seq1  CAGTTGTTATCTAAAAAAATAGTTCAAAA--GAACATATATA-GTGATTT  244
      |||||| ||||||||||||||||||||||   |||||||||| |||||||
seq2  CAGTTG-TATCTAAAAAAATAGTTCAAAAAGAAACATATATAGGTGATTT  231

seq1  CAACTGTGAACTTAATGCAAGCATGTCCATTTTATTTTTTGATTATTTAA  294
      |||||||||||||||||| |||||||||||||||  |||||||||||| |
seq2  CAACTGTGAACTTAATGCCAGCATGTCCATTTTA--TTTTGATTATTT-A  278

seq1  AATAACAATGTATCATTTTATTAGGGTGTTTGGCCATA-TAGGAATTGAA  343
      ||| ||||||||||||||||| |||||||||||||||| |||||||||||
seq2  AATTACAATGTATCATTTTATAAGGGTGTTTGGCCATATTAGGAATTGAA  328

seq1  AAAAACCTACATATGCATGATCTATCAAAGCATTCCTCTATGTACTTGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTACATATGCATGATCTATCAAAGCATTCCTCTATGTACTTGTG  378

seq1  ATGGCAACAGG-AATATAAGTCAAATATAGAACAGACATGCCTCAAAAAT  442
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACAGGAAATATAAGTCAAATATAGAACAGACATGCCTCAAAAAT  428

seq1  AGTAATATACATTG-AATAATGTTTGTCAATTCAGTCAATAAGCCACTTT  491
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTAATATACATTGAAATAATGTTTGTCAATTCAGTCAATAAGCCACTTT  478

seq1  TGGAATATCATAGTAT-AAGAGTAATTATC-TTGATACACTTTTATAGCT  539
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TGGAATATCATAGTATAAAGAGTAATTATCTTTGATACACTTTTATAGCT  528

seq1  GGACCTATTATATG-AATAGGAGCAACCTTCATAATATTTGAATAATAGT  588
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGACCTATTATATGAAATAGGAGCAACCTTCATAATATTTGAATAATAGT  578

seq1  GTCTTATATTTTAAGTTATGAAATAAATAGTTGTAGAAGACCAGTGTTTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATATTTTAAGTTATGAAATAAATAGTTGTAGAAGACCAGTGTTTA  628

seq1  GAAGTTCCCATTTTGACTGCATATGTGTATATGTTTGCACACATGCGCAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCCATTTTGACTGCATATGTGTATATGTTTGCACACATGCGCAC  678

seq1  AGATCATGTGTCTTCATTTAAAAGCTGTGGCTTCTGTAAAATTTAATTAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTGTCTTCATTTAAAAGCTGTGGCTTCTGTAAAATTTAATTAC  728

seq1  ATCTCCCCAAAGCTTTAAACTGTAAGTGGCTTTAAATCAAGTATGTCTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCAAAGCTTTAAACTGTAAGTGGCTTTAAATCAAGTATGTCTTG  778

seq1  CAAACAGGGGCACGTTCTATTAAATGCAATTATGTATCCCTCGGTACCGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGGGCACGTTCTATTAAATGCAATTATGTATCCCTCGGTACCGC  828

seq1  ACAGTACAGGTATAGCTGCTCAAGGCACATCTTCTGTGAGAGTGCACAGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGGTATAGCTGCTCAAGGCACATCTTCTGTGAGAGTGCACAGT  878

seq1  GGAAATGGCGGAGCAGGGTCGAAGGCCCTCATGTCTCTCGGAAGTGACAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCGGAGCAGGGTCGAAGGCCCTCATGTCTCTCGGAAGTGACAA  928

seq1  ACAGTACTGCTGCTTATAGTCAAAATGCTGGGAGAAGGCTTTAGGGATGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTGCTGCTTATAGTCAAAATGCTGGGAGAAGGCTTTAGGGATGT  978

seq1  AAGACAAAGCCAAGGAAATCAAATTTCATGCCATTTTCATGTATGACATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGCCAAGGAAATCAAATTTCATGCCATTTTCATGTATGACATG  1028

seq1  TATGACTTTGGAAGCAGTCCACTTATGCTAATTCTTCAATACATTAAATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGGAAGCAGTCCACTTATGCTAATTCTTCAATACATTAAATA  1078

seq1  TGAATTCAAAGGATTGAGATGAAGAGCATCTTTTGCATTATATTTGAATT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAAGGATTGAGATGAAGAGCATCTTTTGCATTATATTTGAATT  1128

seq1  TCAGAACCATCTGCATCACTAACTTCTAGCCATGCAGAAGGAATTACAGA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCATCTGCATCACTAACTTCTAGCCATGCAGAAGGAATTACAGA  1178

seq1  CAAAGCAGCTTGGAATTATACTTTCATTTGTTAAAAAAACAAACAAACAA  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGCTTGGAATTATACTTTCATTTGTTAAAAAAACAAACAAACAA  1228

seq1  AGAATTC  1245
      |||||||
seq2  AGAATTC  1235

seq1: chr4_12855517_12856604
seq2: B6Ng01-164K24.g_68_1160

seq1  GAATTCTTTCAGTTCCACTCCTTTGCCTGTAGATTTCAGGATGTGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTTCCACTCCTTTGCCTGTAGATTTCAGGATGTGCTTTT  50

seq1  TAAACAGCTGAGTAATAGTGCATTGTGTAAAGCACATGCTTATTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCTGAGTAATAGTGCATTGTGTAAAGCACATGCTTATTAAAGGA  100

seq1  CAAGGCTGGGCAGACACTGTGTCTTGCGATATCACTATAGGAGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGGCAGACACTGTGTCTTGCGATATCACTATAGGAGTGACAGC  150

seq1  ATAAAAAGATTGAAATAAAATATACTTATGAACTATACTAATAGAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATTGAAATAAAATATACTTATGAACTATACTAATAGAACTGG  200

seq1  TTTCATGGGAGGGAGCCTTTATTCGATGAGACCCAGTTTGTATTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGGAGGGAGCCTTTATTCGATGAGACCCAGTTTGTATTTCCTGA  250

seq1  TGACTAATATTATAATATAATTTGGCTTTAGTATTAAAATTATTTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATTATAATATAATTTGGCTTTAGTATTAAAATTATTTTCTAA  300

seq1  GCATCACTTTTGTTTTTAAATGTGTAAATTACTTTTCCCTTTTTTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACTTTTGTTTTTAAATGTGTAAATTACTTTTCCCTTTTTTATTGA  350

seq1  ATTCAGAAAACATTTTGAATTCCTGTGCTTGCAGCTTCTCATTTTTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAACATTTTGAATTCCTGTGCTTGCAGCTTCTCATTTTTGAAC  400

seq1  ATTAGCTATTGTTATTCTGTTAGTTTACTGAGGCAAATAGCAAACTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTATTGTTATTCTGTTAGTTTACTGAGGCAAATAGCAAACTATTG  450

seq1  ATAATCTCTTTTGCAAATATCCCATACAGCCCAGCGCAGATGTCAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTTTTGCAAATATCCCATACAGCCCAGCGCAGATGTCAGACAT  500

seq1  TTGCCTTTTTGGTAGATTGGATCATCACTGACCTGACTAGCGATGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTTGGTAGATTGGATCATCACTGACCTGACTAGCGATGGAGAC  550

seq1  TTTCTCATATTTACTTGGACTTTTAAATTTCTATAACTGACTCTTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATATTTACTTGGACTTTTAAATTTCTATAACTGACTCTTTGACC  600

seq1  AAGATTTAATATGTTGATGGGACTGGATCAGTCCCACAAGGATAATATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATATGTTGATGGGACTGGATCAGTCCCACAAGGATAATATCC  650

seq1  ATCTTTTAACATCATCTGATGTGGGAACTTCATTGGAGCTTGATGTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAACATCATCTGATGTGGGAACTTCATTGGAGCTTGATGTGCCT  700

seq1  TGTGCTATTTACACATAGCATAACCACAGAATCTCCTCATAGCTACGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTTACACATAGCATAACCACAGAATCTCCTCATAGCTACGGGA  750

seq1  TTTACCCATGTACAAAGTGAGGATGAGGAGGCAATTAAACTACACATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATGTACAAAGTGAGGATGAGGAGGCAATTAAACTACACATAAT  800

seq1  ATAGACAACACATAACAGTAAATTTTTAAGGAGAAAATCGTTTACTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACACATAACAGTAAATTTTTAAGGAGAAAATCGTTTACTTAAA  850

seq1  TTTTTAATTTTAAAAATTTTTCTACATGAATATTGTATTTATATTACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTAAAAATTTTTCTACATGAATATTGTATTTATATTACTTC  900

seq1  CATTCCTTTTCCCCTCCCCTCAACTTCTCTCC-TGTACCCCAAGCCCCAT  949
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CATTCCTTTTCCCCTCCCCTCAACTTCTCTCCTTGTA-CCCAAGCCCCAT  949

seq1  TCAAATCTATGACTTATTTATTATTGTTATATGTTATATATCATAATCCA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAAATCTATGACTTATTTATTATTG-TATATGTTATATATCATAATCCA  998

seq1  TCTATAATATATAACAAATATA-TTTTATAC-TGTATATATACAATGCA-  1046
      |||||||| ||||||||||||| ||||| || |||||||||   ||||| 
seq2  TCTATAATTTATAACAAATATATTTTTAAACTTGTATATATTACATGCAT  1048

seq1  TATTATATGATA-TGTGACATCTATACACG-CATA-TAGATATTT  1088
      |||||||||||| ||||||||||||||||| |||| |||||||||
seq2  TATTATATGATATTGTGACATCTATACACGCCATATTAGATATTT  1093