BAC Information

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BAC

Clone NameB6Ng01-164L11
Chromosome4 (Build37)
Map Location 34,766,500 - 34,904,713
singlet/doubletdoublet
Overlap geneZfp292, Cga, Mobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164L11.bB6Ng01-164L11.g
ACCDH956965DH956966
length1,0281,157
definitionDH956965|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L11, 5' end.DH956966|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,766,500 - 34,767,533)(34,903,570 - 34,904,713)
sequence
gaattcttatcattgtttttatttcttttttagacagggtctcactatgt
ggtgctggctgacctgcaacttactgcgtaggccaggcaagactggaaat
cgtaaaaatgagtttacaaagccaccagagtaatgggattaaaggcttgt
gtcaccccacctgacctttgtttactaatttaacaaaatccttagaaaag
aatagcaactcaccaagcacagtacatatctccttgctggagctgccgtg
acagaaaggcagtacacaaaaccagggcgcttttctcatcaccctctgac
tctaagttacagatcatttctaacgcatctttgcaatccacttctgaaat
ctatagaaaaaggaaacaaaaacaggtcatgaagtggctttaggacacac
acacaacaataaatttaattttccttttgatacacacaaattcttatcag
taaaacatatcaaagttatatactatcaaatgataactgagataaagact
tggcaagttattttttaaaataaccactcttttttgttttgttttgtttt
cgagacagggtttctgaactcactttgtagaccagggtggtcttgaactc
agaaatccacctgcctctgcctccccagtgctgggattaaaggtgtgtgc
caccacacccggctataaccactctttataactaataaatattaatacag
tattctgagagagtactaaaaccgcaggataccaactaccttcagaaatg
catgaaatgttcagtaactaccaggtgttaattagtcataagcatctttt
acccatttaaattggatccattaccaaaaaagaaaaccacagcacttttc
actgttactcttttgactcactgatttcaaaccattactaaaacctgaaa
acacagagatgtatggatacagactaataaactgtctactatcttaaggg
aagaaaaacccagagtattgatacagctgatcactttaaaacaggctcct
catctctactatttgctttcaataaact
gaattcttctggtagacagttgtggctccctctcagagctctgtgtacat
aatgacgcggccgcccaaagcacagcacgttccgtgggctcttcgcaggg
gctccttcccgtctgtctcagagcactgatcattgcagatagtcatggag
tcagctataaacccgaagtcatgtttatccttggaattaccctcttcctt
tccaatacacaatctgctgtcagacgttaactcagaatacgagaacctgc
agttttgattttcatgcccttgcttgtttataccccaggctagcctcagc
ctcctaaatattgggataacagttgttgtaccaccatgctgagttcacaa
gaaccactggagactctcgatgggaagagcagatttctcttatgcttgga
gtggctatttcctttcctcgcaggaggcgcatgggtctttctttgctgtt
cacaccctgctatggtcaggagctctctgctccagcatagcaacacccaa
tccctgagccagtctcacctctctgctgccacagctcagtcccctctacc
tctaaagctcagatccatatcagagtgtgtattaacagaaaactcttcct
agaaaacacttcatgccggcgcggagtgactggtgtcgggtttgtgcttc
tgaaccacacaggaaggaatcagagaagggggctgaggtgtatggcatcc
atgcatagatcagtgcatttaacctgcccctgagccactcactcactcac
acactacactggacaggtgaagagactgagaacttgtggcttactcgtta
agcaaacatttattgaaccttgattatcaggtactgggggatacaagggc
caacggcgggcgggcacagtccataggatctaacctgggatgccccaaag
agcagaaatgaaaggcttttctgtaggcacaatgtctattgtccgcagcg
gaaagtcttgccttctaggctgatttccctatccccacgacaatcaacac
agcactgtaatggtttaagaatctctgcctcaagtttggtatatacgaat
gatcactaaggaattctctgccctgtcagtgaatctttgaacggccaata
actaaggtcaataaaataaataatgggcgggactttcctctccaccctag
gggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34766500_34767533
seq2: B6Ng01-164L11.b_46_1073

seq1  GAATTCTTATCATTGTTTTTATTTCTTTTTTAGACAGGGTCTCACTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATTGTTTTTATTTCTTTTTTAGACAGGGTCTCACTATGT  50

seq1  GGTGCTGGCTGACCTGCAACTTACTGCGTAGGCCAGGCAAGACTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGCTGACCTGCAACTTACTGCGTAGGCCAGGCAAGACTGGAAAT  100

seq1  CGTAAAAATGAGTTTACAAAGCCACCAGAGTAATGGGATTAAAGGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAAATGAGTTTACAAAGCCACCAGAGTAATGGGATTAAAGGCTTGT  150

seq1  GTCACCCCACCTGACCTTTGTTTACTAATTTAACAAAATCCTTAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCACCTGACCTTTGTTTACTAATTTAACAAAATCCTTAGAAAAG  200

seq1  AATAGCAACTCACCAAGCACAGTACATATCTCCTTGCTGGAGCTGCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAACTCACCAAGCACAGTACATATCTCCTTGCTGGAGCTGCCGTG  250

seq1  ACAGAAAGGCAGTACACAAAACCAGGGCGCTTTTCTCATCACCCTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGCAGTACACAAAACCAGGGCGCTTTTCTCATCACCCTCTGAC  300

seq1  TCTAAGTTACAGATCATTTCTAACGCATCTTTGCAATCCACTTCTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTACAGATCATTTCTAACGCATCTTTGCAATCCACTTCTGAAAT  350

seq1  CTATAGAAAAAGGAAACAAAAACAGGTCATGAAGTGGCTTTAGGACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAAAAGGAAACAAAAACAGGTCATGAAGTGGCTTTAGGACACAC  400

seq1  ACACAACAATAAATTTAATTTTCCTTTTGATACACACAAATTCTTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAATAAATTTAATTTTCCTTTTGATACACACAAATTCTTATCAG  450

seq1  TAAAACATATCAAAGTTATATACTATCAAATGATAACTGAGATAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATATCAAAGTTATATACTATCAAATGATAACTGAGATAAAGACT  500

seq1  TGGCAAGTTATTTTTTAAAATAACCACTCTTTTTTGTTTTGTTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTTATTTTTTAAAATAACCACTCTTTTTTGTTTTGTTTTGTTTT  550

seq1  CGAGACAGGGTTTCTGAACTCACTTTGTAGACCAGGGTGGTCTTGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTGAACTCACTTTGTAGACCAGGGTGGTCTTGAACTC  600

seq1  AGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGTGC  650

seq1  CACCACACCCGGCTATAACCACTCTTTATAACTAATAAATATTAATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCCGGCTATAACCACTCTTTATAACTAATAAATATTAATACAG  700

seq1  TATTCTGAGAGAGTACTAAAACCGCAGGATACCAACTACCTTCAGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAGAGAGTACTAAAACCGCAGGATACCAACTACCTTCAGAAATG  750

seq1  CATG-AATGTTCAGTAACTACCAGGTGTTAATTAGTCATAAGCATCTTTT  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGTTCAGTAACTACCAGGTGTTAATTAGTCATAAGCATCTTTT  800

seq1  ACCCA-TTAAATTGGATCCATTACCAAAAAAGAAAACCACAGCAC-TTTC  847
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCCATTTAAATTGGATCCATTACCAAAAAAGAAAACCACAGCACTTTTC  850

seq1  ACTGTTACTC-TTTGACTCACTGA-TTCAAACCATTACTAAAACCCGAAA  895
      |||||||||| ||||||||||||| |||||||||||||||||||| ||||
seq2  ACTGTTACTCTTTTGACTCACTGATTTCAAACCATTACTAAAACCTGAAA  900

seq1  ACACAGAGAATGTAGTGGATACAGACTAATAAACTGTCTACTAATCTTAA  945
      |||||||| ||||| ||||||||||||||||||||||||||| |||||||
seq2  ACACAGAG-ATGTA-TGGATACAGACTAATAAACTGTCTACT-ATCTTAA  947

seq1  GGGAAGAAAAAACCCAGAGTATTGAATACAGCTGTATCACTTTAAAAACA  995
      |||||| ||||||||||||||||| ||||||||| |||||||| ||||||
seq2  GGGAAG-AAAAACCCAGAGTATTG-ATACAGCTG-ATCACTTT-AAAACA  993

seq1  GGCTCACTCATCTCTACTATTTTGCTTTTCATATAAACT  1034
      ||||| ||||||||||||| ||||| ||||| |||||||
seq2  GGCTC-CTCATCTCTACTA-TTTGC-TTTCA-ATAAACT  1028

seq1: chr4_34903570_34904713
seq2: B6Ng01-164L11.g_69_1225 (reverse)

seq1  TCCTCCCCT-GGCTGGA---TGAAGTCCCGCCC--TATTCTTTCTATTG-  43
      ||||||||| || ||||     |||||||||||  ||||  || ||||| 
seq2  TCCTCCCCTAGGGTGGAGAGGAAAGTCCCGCCCATTATTTATTTTATTGA  50

seq1  -CCTAGTTATTGGCCGTTCCAGATTTCACTGACAAGGCAGAGAATACC-T  91
       | |||||||||||||||| |   |||||||||| |||||||||| || |
seq2  CCTTAGTTATTGGCCGTTCAAAGATTCACTGACAGGGCAGAGAATTCCTT  100

seq1  GGTGAGCA-TCGTTTATA-CAAACTTGAGACAGGAGATTCTTAAA-CATT  138
       |||| || |||| |||| |||||||||| || |||||||||||| ||||
seq2  AGTGATCATTCGTATATACCAAACTTGAGGCA-GAGATTCTTAAACCATT  149

seq1  ACAGTGCTGTGTCTGGATTGTCGT-GGGATAGGGAAATCAGCCTAGAAGG  187
      |||||||||||  | ||||||||| |||||||||||||||||||||||||
seq2  ACAGTGCTGTG--TTGATTGTCGTGGGGATAGGGAAATCAGCCTAGAAGG  197

seq1  GCAGACTTTCCGCTGCGGACAAT-GACATTGTGCCTACAGAAAAGCCTTT  236
        ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGACTTTCCGCTGCGGACAATAGACATTGTGCCTACAGAAAAGCCTTT  247

seq1  CATTTCTGCTCTTTGGGGCATCCCAGGTTAGATCCTATGGACTGTG-CCG  285
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTTCTGCTCTTTGGGGCATCCCAGGTTAGATCCTATGGACTGTGCCCG  297

seq1  GCCGCCGTTGGCCCTTGTAT-CCCCAGTGCCTGATAATC-AGGTTCAATA  333
       ||||||||||||||||||| ||||||| |||||||||| ||||||||||
seq2  CCCGCCGTTGGCCCTTGTATCCCCCAGTACCTGATAATCAAGGTTCAATA  347

seq1  AATGTTTGCTTAATCGAGTAAGCCACAGGTTCTCAGTCTCTTCACCTGTC  383
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AATGTTTGCTTAA-CGAGTAAGCCACAAGTTCTCAGTCTCTTCACCTGTC  396

seq1  CAGTGTAGTGTGTGAGTGAGTGAGTGGCTCAGGGGCAGGTTAAATGCACT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGTGTGTGAGTGAGTGAGTGGCTCAGGGGCAGGTTAAATGCACT  446

seq1  GATCTATGCATGGATGCCATACACCTCAGCCCCCTTCTCTGATTCCTTCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGCATGGATGCCATACACCTCAGCCCCCTTCTCTGATTCCTTCC  496

seq1  TGTGTGGTTCAGAAGCACAAACCCGACACCAGTCACTCCGCGCCGGCATG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTCAGAAGCACAAACCCGACACCAGTCACTCCGCGCCGGCATG  546

seq1  AAGTGTTTTCTAGGAAGAGTTTTCTGTTAATACACACTCTGATATGGATC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTCTAGGAAGAGTTTTCTGTTAATACACACTCTGATATGGATC  596

seq1  TGAGCTTTAGAGGTAGAGGGGACTGAGCTGTGGCAGCAGAGAGGTGAGAC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTAGAGGTAGAGGGGACTGAGCTGTGGCAGCAGAGAGGTGAGAC  646

seq1  TGGCTCAGGGATTGGGTGTTGCTATGCTGGAGCAGAGAGCTCCTGACCAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGGATTGGGTGTTGCTATGCTGGAGCAGAGAGCTCCTGACCAT  696

seq1  AGCAGGGTGTGAACAGCAAAGAAAGACCCATGCGCCTCCTGCGAGGAAAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTGTGAACAGCAAAGAAAGACCCATGCGCCTCCTGCGAGGAAAG  746

seq1  GAAATAGCCACTCCAAGCATAAGAGAAATCTGCTCTTCCCATCGAGAGTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCACTCCAAGCATAAGAGAAATCTGCTCTTCCCATCGAGAGTC  796

seq1  TCCAGTGGTTCTTGTGAACTCAGCATGGTGGTACAACAACTGTTATCCCA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGTTCTTGTGAACTCAGCATGGTGGTACAACAACTGTTATCCCA  846

seq1  ATATTTAGGAGGCTGAGGCTAGCCTGGGGTATAAACAAGCAAGGGCATGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGAGGCTGAGGCTAGCCTGGGGTATAAACAAGCAAGGGCATGA  896

seq1  AAATCAAAACTGCAGGTTCTCGTATTCTGAGTTAACGTCTGACAGCAGAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAACTGCAGGTTCTCGTATTCTGAGTTAACGTCTGACAGCAGAT  946

seq1  TGTGTATTGGAAAGGAAGAGGGTAATTCCAAGGATAAACATGACTTCGGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGGAAAGGAAGAGGGTAATTCCAAGGATAAACATGACTTCGGG  996

seq1  TTTATAGCTGACTCCATGACTATCTGCAATGATCAGTGCTCTGAGACAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTGACTCCATGACTATCTGCAATGATCAGTGCTCTGAGACAGA  1046

seq1  CGGGAAGGAGCCCCTGCGAAGAGCCCACGGAACGTGCTGTGCTTTGGGCG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGGAGCCCCTGCGAAGAGCCCACGGAACGTGCTGTGCTTTGGGCG  1096

seq1  GCCGCGTCATTATGTACACAGAGCTCTGAGAGGGAGCCACAACTGTCTAC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGTCATTATGTACACAGAGCTCTGAGAGGGAGCCACAACTGTCTAC  1146

seq1  CAGAAGAATTC  1144
      |||||||||||
seq2  CAGAAGAATTC  1157