BAC Information

Click to search

BAC

Clone NameB6Ng01-164M11
Chromosome4 (Build37)
Map Location 34,766,500 - 34,904,713
singlet/doubletdoublet
Overlap geneZfp292, Cga, Mobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164M11.bB6Ng01-164M11.g
ACCDH957013DH957014
length1,1071,127
definitionDH957013|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M11, 5' end.DH957014|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,766,500 - 34,767,607)(34,903,579 - 34,904,713)
sequence
gaattcttatcattgtttttatttcttttttagacagggtctcactatgt
ggtgctggctgacctgcaacttactgcgtaggccaggcaagactggaaat
cgtaaaaatgagtttacaaagccaccagagtaatgggattaaaggcttgt
gtcaccccacctgacctttgtttactaatttaacaaaatccttagaaaag
aatagcaactcaccaagcacagtacatatctccttgctggagctgccgtg
acagaaaggcagtacacaaaaccagggcgcttttctcatcaccctctgac
tctaagttacagatcatttctaacgcatctttgcaatccacttctgaaat
ctatagaaaaaggaaacaaaaacaggtcatgaagtggctttaggacacac
acacaacaataaatttaattttccttttgatacacacaaattcttatcag
taaaacatatcaaagttatatactatcaaatgataactgagataaagact
tggcaagttattttttaaaataaccactcttttttgttttgttttgtttt
cgagacagggtttctgaactcactttgtagaccagggtggtcttgaactc
agaaatccacctgcctctgcctccccagtgctgggattaaaggtgtgtgc
caccacacccggctataaccactctttataactaataaatattaatacag
tattctgagagagtactaaaaccgcaggataccaactaccttcagaaatg
catgaatgttcagtaactaccaggtgttaattagtcataagcatctttta
cccattaaattggatccattaccaaaaaagaaaaccacagcactttcact
gttactctttgactcactgattcaaaccattactaaaacccgaaacacag
agaatgtagtggatacagactaataaactgtctactaatcttaagggaag
aaaaacccagagtattgaatacagctttatcactttaaaaacaggctcac
tcatcttctactattttgcttttcatataacttacttcaacttcaaagcg
ttgctggaggtcatatactcttaaggcaacctggaatcattttacctgat
atttaaa
gaattcttctggtagacagttgtggctccctctcagagctctgtgtacat
aatgacgcggccgcccaaagcacagcacgttccgtgggctcttcgcaggg
gctccttcccgtctgtctcagagcactgatcattgcagatagtcatggag
tcagctataaacccgaagtcatgtttatccttggaattaccctcttcctt
tccaatacacaatctgctgtcagacgttaactcagaatacgagaacctgc
agttttgattttcatgcccttgcttgtttataccccaggctagcctcagc
ctcctaaatattgggataacagttgttgtaccaccatgctgagttcacaa
gaaccactggagactctcgatgggaagagcagatttctcttatgcttgga
gtggctatttcctttcctcgcaggaggcgcatgggtctttctttgctgtt
cacaccctgctatggtcaggagctctctgctccagcatagcaacacccaa
tccctgagccagtctcacctctctgctgccacagctcagtcccctctacc
tctaaagctcagatccatatcagagtgtgtattaacagaaaactcttcct
agaaaacacttcatgccggcgcggagtgactggtgtcgggtttgtgcttc
tgaaccacacaggaaggaatcagagaagggggctgaggtgtatggcatcc
atgcatagatcagtgcatttaacctgcccctgagccactcactcactcac
acactacactggacaggtgaagagactgagaacctgtggcttactcgatt
aagcaaacatttattgaacctgattatcaagcactggggatacaagggcc
aacggcggccggcacagtccataggatctaacctgggatgccccaaagag
cagaaatgaaaggcttttctgtagcacatgtcattgtccgcagcggaaag
tctgcccttctaggctgatttcctatcccacgacatccagacacaagcac
tgtaatggttaagaatctcctgtctccagtttgtataacgatgcctcaca
agtattttctgcctggcagtgaatctggaacgcaataactagcaatataa
aagaatagggcggggaatcttccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34766500_34767607
seq2: B6Ng01-164M11.b_45_1151

seq1  GAATTCTTATCATTGTTTTTATTTCTTTTTTAGACAGGGTCTCACTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATTGTTTTTATTTCTTTTTTAGACAGGGTCTCACTATGT  50

seq1  GGTGCTGGCTGACCTGCAACTTACTGCGTAGGCCAGGCAAGACTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGCTGACCTGCAACTTACTGCGTAGGCCAGGCAAGACTGGAAAT  100

seq1  CGTAAAAATGAGTTTACAAAGCCACCAGAGTAATGGGATTAAAGGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAAATGAGTTTACAAAGCCACCAGAGTAATGGGATTAAAGGCTTGT  150

seq1  GTCACCCCACCTGACCTTTGTTTACTAATTTAACAAAATCCTTAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCACCTGACCTTTGTTTACTAATTTAACAAAATCCTTAGAAAAG  200

seq1  AATAGCAACTCACCAAGCACAGTACATATCTCCTTGCTGGAGCTGCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAACTCACCAAGCACAGTACATATCTCCTTGCTGGAGCTGCCGTG  250

seq1  ACAGAAAGGCAGTACACAAAACCAGGGCGCTTTTCTCATCACCCTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGCAGTACACAAAACCAGGGCGCTTTTCTCATCACCCTCTGAC  300

seq1  TCTAAGTTACAGATCATTTCTAACGCATCTTTGCAATCCACTTCTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTACAGATCATTTCTAACGCATCTTTGCAATCCACTTCTGAAAT  350

seq1  CTATAGAAAAAGGAAACAAAAACAGGTCATGAAGTGGCTTTAGGACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAAAAGGAAACAAAAACAGGTCATGAAGTGGCTTTAGGACACAC  400

seq1  ACACAACAATAAATTTAATTTTCCTTTTGATACACACAAATTCTTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAATAAATTTAATTTTCCTTTTGATACACACAAATTCTTATCAG  450

seq1  TAAAACATATCAAAGTTATATACTATCAAATGATAACTGAGATAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATATCAAAGTTATATACTATCAAATGATAACTGAGATAAAGACT  500

seq1  TGGCAAGTTATTTTTTAAAATAACCACTCTTTTTTGTTTTGTTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTTATTTTTTAAAATAACCACTCTTTTTTGTTTTGTTTTGTTTT  550

seq1  CGAGACAGGGTTTCTGAACTCACTTTGTAGACCAGGGTGGTCTTGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTGAACTCACTTTGTAGACCAGGGTGGTCTTGAACTC  600

seq1  AGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGTGC  650

seq1  CACCACACCCGGCTATAACCACTCTTTATAACTAATAAATATTAATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCCGGCTATAACCACTCTTTATAACTAATAAATATTAATACAG  700

seq1  TATTCTGAGAGAGTACTAAAACCGCAGGATACCAACTACCTTCAGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAGAGAGTACTAAAACCGCAGGATACCAACTACCTTCAGAAATG  750

seq1  CATGAATGTTCAGTAACTACCAGGTGTTAATTAGTCATAAGCATCTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGTTCAGTAACTACCAGGTGTTAATTAGTCATAAGCATCTTTTA  800

seq1  CCCATTAAATTGGATCCATTACCAAAAAAGAAAACCACAGCACTTTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAATTGGATCCATTACCAAAAAAGAAAACCACAGCACTTTCACT  850

seq1  GTTACTCTTTGACTCACTGATTCAAACCATTACTAAAACCCGAAAACACA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTACTCTTTGACTCACTGATTCAAACCATTACTAAAACCCG-AAACACA  899

seq1  GAGAATGTAGTGGATACAGACTAATAAACTGTCTACTAATCTTAAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTAGTGGATACAGACTAATAAACTGTCTACTAATCTTAAGGGAA  949

seq1  GAAAAAACCCAGAGTATTGAATACAGCTGTATCACTTTAAAAACAGGCTC  1000
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  G-AAAAACCCAGAGTATTGAATACAGCTTTATCACTTTAAAAACAGGCTC  998

seq1  ACTCATC-TCTACTATTTTGCTTTTCATATAAACTTACTCCAAC-TCAAA  1048
      ||||||| |||||||||||||||||||||| |||||||| |||| |||||
seq2  ACTCATCTTCTACTATTTTGCTTTTCATAT-AACTTACTTCAACTTCAAA  1047

seq1  GCGTTGCTGGAGGTTCATATACTCTAAAGGCAACCT-GAATCATTTAACC  1097
      ||||||||||||| ||||||||||| |||||||||| ||||||||| |||
seq2  GCGTTGCTGGAGG-TCATATACTCTTAAGGCAACCTGGAATCATTTTACC  1096

seq1  TAGTATTTAAA  1108
      |  ||||||||
seq2  TGATATTTAAA  1107

seq1: chr4_34903579_34904713
seq2: B6Ng01-164M11.g_71_1197 (reverse)

seq1  GGCTGGATGAAGTCCCGCCCTATTC-TTTCTATTGCCTAGTTATTGGCCG  49
      ||||||| ||   |||||||||||| ||| ||||| ||||||||||  ||
seq2  GGCTGGAAGATTCCCCGCCCTATTCTTTTATATTG-CTAGTTATTG--CG  47

seq1  TTCCAGATTTCACTGACAAGGCAGAGAATACCTGGTGA-GCATCGTTTAT  98
      ||||||| ||||||| | ||||||| |||| || |||| |||||| ||||
seq2  TTCCAGA-TTCACTG-CCAGGCAGAAAATA-CTTGTGAGGCATCG-TTAT  93

seq1  ACAAACTTGAGACAGGAGATTCTTAAACATTACAGTGC-TGTGTCTGGAT  147
      ||||||| |||||||||||||||||| ||||||||||| |||||||||| 
seq2  ACAAACTGGAGACAGGAGATTCTTAACCATTACAGTGCTTGTGTCTGGA-  142

seq1  TGTCGTGGGATAGGGAAATCAGCCTAGAAGGGCAGACTTTCCGCTGCGGA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGGGATA-GGAAATCAGCCTAGAAGGGCAGACTTTCCGCTGCGGA  191

seq1  CAATGACATTGTGCCTACAGAAAAGCCTTTCATTTCTGCTCTTTGGGGCA  247
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CAATGACA-TGTG-CTACAGAAAAGCCTTTCATTTCTGCTCTTTGGGGCA  239

seq1  TCCCAGGTTAGATCCTATGGACTGTGCCGGCCGCCGTTGGCCCTTGTATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTTAGATCCTATGGACTGTGCCGGCCGCCGTTGGCCCTTGTATC  289

seq1  CCCAGTGCCTGATAATCAGGTTCAATAAATGTTTGCTTAATCGAGTAAGC  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCTTGATAATCAGGTTCAATAAATGTTTGCTTAATCGAGTAAGC  339

seq1  CACAGGTTCTCAGTCTCTTCACCTGTCCAGTGTAGTGTGTGAGTGAGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTCTCAGTCTCTTCACCTGTCCAGTGTAGTGTGTGAGTGAGTGA  389

seq1  GTGGCTCAGGGGCAGGTTAAATGCACTGATCTATGCATGGATGCCATACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGGGGCAGGTTAAATGCACTGATCTATGCATGGATGCCATACA  439

seq1  CCTCAGCCCCCTTCTCTGATTCCTTCCTGTGTGGTTCAGAAGCACAAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCCCCTTCTCTGATTCCTTCCTGTGTGGTTCAGAAGCACAAACC  489

seq1  CGACACCAGTCACTCCGCGCCGGCATGAAGTGTTTTCTAGGAAGAGTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACCAGTCACTCCGCGCCGGCATGAAGTGTTTTCTAGGAAGAGTTTT  539

seq1  CTGTTAATACACACTCTGATATGGATCTGAGCTTTAGAGGTAGAGGGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATACACACTCTGATATGGATCTGAGCTTTAGAGGTAGAGGGGAC  589

seq1  TGAGCTGTGGCAGCAGAGAGGTGAGACTGGCTCAGGGATTGGGTGTTGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGGCAGCAGAGAGGTGAGACTGGCTCAGGGATTGGGTGTTGCT  639

seq1  ATGCTGGAGCAGAGAGCTCCTGACCATAGCAGGGTGTGAACAGCAAAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGCAGAGAGCTCCTGACCATAGCAGGGTGTGAACAGCAAAGAA  689

seq1  AGACCCATGCGCCTCCTGCGAGGAAAGGAAATAGCCACTCCAAGCATAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATGCGCCTCCTGCGAGGAAAGGAAATAGCCACTCCAAGCATAAG  739

seq1  AGAAATCTGCTCTTCCCATCGAGAGTCTCCAGTGGTTCTTGTGAACTCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCTCTTCCCATCGAGAGTCTCCAGTGGTTCTTGTGAACTCAG  789

seq1  CATGGTGGTACAACAACTGTTATCCCAATATTTAGGAGGCTGAGGCTAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGTACAACAACTGTTATCCCAATATTTAGGAGGCTGAGGCTAGC  839

seq1  CTGGGGTATAAACAAGCAAGGGCATGAAAATCAAAACTGCAGGTTCTCGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTATAAACAAGCAAGGGCATGAAAATCAAAACTGCAGGTTCTCGT  889

seq1  ATTCTGAGTTAACGTCTGACAGCAGATTGTGTATTGGAAAGGAAGAGGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTTAACGTCTGACAGCAGATTGTGTATTGGAAAGGAAGAGGGT  939

seq1  AATTCCAAGGATAAACATGACTTCGGGTTTATAGCTGACTCCATGACTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGGATAAACATGACTTCGGGTTTATAGCTGACTCCATGACTAT  989

seq1  CTGCAATGATCAGTGCTCTGAGACAGACGGGAAGGAGCCCCTGCGAAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGATCAGTGCTCTGAGACAGACGGGAAGGAGCCCCTGCGAAGAG  1039

seq1  CCCACGGAACGTGCTGTGCTTTGGGCGGCCGCGTCATTATGTACACAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGAACGTGCTGTGCTTTGGGCGGCCGCGTCATTATGTACACAGAG  1089

seq1  CTCTGAGAGGGAGCCACAACTGTCTACCAGAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGGGAGCCACAACTGTCTACCAGAAGAATTC  1127