BAC Information

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BAC

Clone NameB6Ng01-164P01
Chromosome4 (Build37)
Map Location 108,434,586 - 108,543,040
singlet/doubletdoublet
Overlap gene3110021N24Rik, Btf3l4, Txndc12, Kti12
Upstream gene4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326
Downstream geneRab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164P01.bB6Ng01-164P01.g
ACCDH957133DH957134
length1,122492
definitionDH957133|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P01, 5' end.DH957134|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,434,586 - 108,435,707)(108,542,543 - 108,543,040)
sequence
gaattctacacagctatgcaacagtcatcatccatgctgaggtgagacct
tcaggtaacctcaggggtcagtcatgctctataagtaagtcaaataaact
caatggctcagcacattaagaccggtttgtcactgggattttataaggaa
gtagctatttgtttatatcatttgtttctatcttcttagagaaggcatcc
tcacaacagacttcctcctccaagctaacattttcccttctagtctgctc
tcatttccacctctgcctgccatgatagtagttaatgctacttctaagaa
ggatatgttgagccaaaaaaaaaaaagaagaagaaaagagaatatatatt
ccaaaggcactgcaaagactagccagtttaaaccagcaggaagcaggaca
tttgtgggactatgcttttaataccactaatcaaagaagcagaaacattt
gcctgaagtaaagtttatggaagagtgggatggcgtgcaggggagacact
gtttcaagattcaggaattaactttgacacagacctaagtgttggtataa
acttgtggctaggatggctcttagaagcctggaaaaaaagtgaaatgcct
gaattgatatggcagagtggaggataggataagaaaagaaggttaataga
gtggatatattatggaaggtcatactcaccaaggccatcaagaacacagt
taaagagactataacatcactaacaagttctaatacatgatgtcagggta
tggctcattgataagaataggaaagggcactgaagtaatagcaatcagta
gcaatagtagaagtggatctatcataatgactgacaggtgggaccactaa
taagctaaatcctcgggggacctgtgcagagagttaatgagacagtgtca
ttgggagaaaagtcaatatggttctgctaaaaatttacactcaatacaag
ttagaggctgagggggactgtcccataaagatcccatgaacctcttaccc
aattcctggacctggagcagtttgcaaatgagatccacctgattcaatat
tatcctactggaagaaattatacttagaaacactttgtctggaccatcaa
tggctagtcatggcatgccatg
caggccagccagggctacatagtgagactaaaaaccagggacagctctca
gaactaaatacattgtgttcgtcaaagcagccctcataactaaatatgtt
gtgtttgtcaaaggttcttccttcagatacatttccatggggttgaggaa
tggttaacagtcctggaatgtatcaggtaagtcagggagcctgctgagga
aggctaatagggaagcactgtgaccctctgcaaaggtttaactcgtactc
cctcttgtgttctaagtgggaagtgcactccctctggactgacgagtagc
catggtgctgaagtaagcctagctaccgagcagactagaagggaaggaag
gtctgacaagcacctactgggttgatttttggtatctcatctttttctct
cacgatccattcaacagaagcaaaagcccaagtgacttttctaagaccta
aacactaagaaaacagggtgagggtgggggtgcgggtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108434586_108435707
seq2: B6Ng01-164P01.b_47_1168

seq1  GAATTCTACACAGCTATGCAACAGTCATCATCCATGCTGAGGTGAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAGCTATGCAACAGTCATCATCCATGCTGAGGTGAGACCT  50

seq1  TCAGGTAACCTCAGGGGTCACTCATGCTCTATAAGTAAGTCAAATAAACT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGGTAACCTCAGGGGTCAGTCATGCTCTATAAGTAAGTCAAATAAACT  100

seq1  CAATGGCTCAGCACATTAAGACCGGTTTGTCACTGGGATTTTATAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTCAGCACATTAAGACCGGTTTGTCACTGGGATTTTATAAGGAA  150

seq1  GTAGCTATTTGTTTATATCATTTGTTTCTATCTTCTTAGAGAAGGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATTTGTTTATATCATTTGTTTCTATCTTCTTAGAGAAGGCATCC  200

seq1  TCACAACAGACTTCCTCCTCCAAGCTAACATTTTCCCTTCTAGTCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGACTTCCTCCTCCAAGCTAACATTTTCCCTTCTAGTCTGCTC  250

seq1  TCATTTCCACCTCTGCCTGCCATGATAGTAGTTAATGCTACTTCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCACCTCTGCCTGCCATGATAGTAGTTAATGCTACTTCTAAGAA  300

seq1  GGATATGTTGAGCCAAAAAAAAAAAAGAAGAAGAAAAGAGAATATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTGAGCCAAAAAAAAAAAAGAAGAAGAAAAGAGAATATATATT  350

seq1  CCAAAGGCACTGCAAAGACTAGCCAGTTTAAACCAGCAGGAAGCAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCACTGCAAAGACTAGCCAGTTTAAACCAGCAGGAAGCAGGACA  400

seq1  TTTGTGGGACTATGCTTTTAATACCACTAATCAAAGAAGCAGAAACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGACTATGCTTTTAATACCACTAATCAAAGAAGCAGAAACATTT  450

seq1  GCCTGAAGTAAAGTTTATGGAAGAGTGGGATGGCGTGCAGGGGAGACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGTAAAGTTTATGGAAGAGTGGGATGGCGTGCAGGGGAGACACT  500

seq1  GTTTCAAGATTCAGGAATTAACTTTGACACAGACCTAAGTGTTGGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGATTCAGGAATTAACTTTGACACAGACCTAAGTGTTGGTATAA  550

seq1  ACTTGTGGCTAGGATGGCTCTTAGAAGCCTGGAAAAAAAGTGAAATGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGCTAGGATGGCTCTTAGAAGCCTGGAAAAAAAGTGAAATGCCT  600

seq1  GAATTGATATGGCAGAGTGGAGGATAGGATAAGAAAAGAAGGTTAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATATGGCAGAGTGGAGGATAGGATAAGAAAAGAAGGTTAATAGA  650

seq1  GTGGATATATTATGGAAGGTCATACTCACCAAGGCCATCAAGAACACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATATTATGGAAGGTCATACTCACCAAGGCCATCAAGAACACAGT  700

seq1  TAAAGAGACTATAACATCACTAACAAGTTCTAATACATGATGTCAGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGACTATAACATCACTAACAAGTTCTAATACATGATGTCAGGGTA  750

seq1  TGGCTCATTGATAAGAATAGGAAAGGGCACTGAAGTAATAGCAATCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTCATTGATAAGAATAGGAAAGGGCACTGAAGTAATAGCAATCA-GT  799

seq1  AGCAATAGTAGAAGTGGATCTATCATAATGACTGACAGGTGGGACCACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTAGAAGTGGATCTATCATAATGACTGACAGGTGGGACCACTA  849

seq1  ATAAGCTAAATCCTC-GGGGACCTGTGCAGAGAGTTAATGAGACAGTGTC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAAATCCTCGGGGGACCTGTGCAGAGAGTTAATGAGACAGTGTC  899

seq1  ATTGGGAGAAAAGTCAATCATGGTGCTGCTAAAAATATACACTCAAAACA  949
      |||||||||||||||||| ||||| ||||||||||| ||||||||| |||
seq2  ATTGGGAGAAAAGTCAAT-ATGGTTCTGCTAAAAATTTACACTCAATACA  948

seq1  AGTTAGAGGCTGAGGGGGACTGTCCCAATAAAGATCCCATG-ACCTC-TA  997
      |||||||||||||||||||||||||| |||||||||||||| ||||| ||
seq2  AGTTAGAGGCTGAGGGGGACTGTCCC-ATAAAGATCCCATGAACCTCTTA  997

seq1  GCCAATTCCTGGACCTGAGCCAGTTGTCAAATGAGATCCA-CTGATTCAT  1046
       ||||||||||||||||   |||||  ||||||||||||| |||||||| 
seq2  CCCAATTCCTGGACCTGGAGCAGTTTGCAAATGAGATCCACCTGATTCA-  1046

seq1  ATA-TATCCTTACT-GAAGAAA-TATACTTAGAATACA-TTTGTCTGTGA  1092
      ||| ||||| |||| ||||||| ||||||||||| ||| ||||||||   
seq2  ATATTATCC-TACTGGAAGAAATTATACTTAGAA-ACACTTTGTCTGGAC  1094

seq1  CATCAATGGCATGTCAATGGCATGGCCATG  1122
      ||||||||||  ||| ||||||| ||||||
seq2  CATCAATGGCTAGTC-ATGGCAT-GCCATG  1122

seq1: chr4_108542543_108543040
seq2: B6Ng01-164P01.g_67_564 (reverse)

seq1  ACCCCACCCGCACCCCCACCCTCACCCTGTTTTCTTAGTGTTTAGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCGCACCCCCACCCTCACCCTGTTTTCTTAGTGTTTAGGTCTT  50

seq1  AGAAAAGTCACTTGGGCTTTTGCTTCTGTTGAATGGATCGTGAGAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTCACTTGGGCTTTTGCTTCTGTTGAATGGATCGTGAGAGAAAA  100

seq1  AGATGAGATACCAAAAATCAACCCAGTAGGTGCTTGTCAGACCTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGATACCAAAAATCAACCCAGTAGGTGCTTGTCAGACCTTCCTTC  150

seq1  CCTTCTAGTCTGCTCGGTAGCTAGGCTTACTTCAGCACCATGGCTACTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGTCTGCTCGGTAGCTAGGCTTACTTCAGCACCATGGCTACTCG  200

seq1  TCAGTCCAGAGGGAGTGCACTTCCCACTTAGAACACAAGAGGGAGTACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCAGAGGGAGTGCACTTCCCACTTAGAACACAAGAGGGAGTACGA  250

seq1  GTTAAACCTTTGCAGAGGGTCACAGTGCTTCCCTATTAGCCTTCCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCTTTGCAGAGGGTCACAGTGCTTCCCTATTAGCCTTCCTCAGC  300

seq1  AGGCTCCCTGACTTACCTGATACATTCCAGGACTGTTAACCATTCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCCTGACTTACCTGATACATTCCAGGACTGTTAACCATTCCTCAA  350

seq1  CCCCATGGAAATGTATCTGAAGGAAGAACCTTTGACAAACACAACATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGAAATGTATCTGAAGGAAGAACCTTTGACAAACACAACATATT  400

seq1  TAGTTATGAGGGCTGCTTTGACGAACACAATGTATTTAGTTCTGAGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGAGGGCTGCTTTGACGAACACAATGTATTTAGTTCTGAGAGCT  450

seq1  GTCCCTGGTTTTTAGTCTCACTATGTAGCCCTGGCTGGCCTGGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGTTTTTAGTCTCACTATGTAGCCCTGGCTGGCCTGGAATTC  498