BAC Information

Click to search

BAC

Clone NameB6Ng01-165H19
Chromosome4 (Build37)
Map Location 45,205,127 - 45,350,560
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3, Exosc3
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneLOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H19.bB6Ng01-165H19.g
ACCDH957532DH957533
length1,0791,061
definitionDH957532|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H19, 5' end.DH957533|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,349,484 - 45,350,560)(45,205,127 - 45,206,200)
sequence
gaattcaggaccagcctgtgctacacagtgattccaggctatataattag
gcactcagattcattcccattctctgactcattttctccctccttctccc
ttcttcctactgcccccccatcccccacccaccactaccattaataataa
aacaaacaagaaaatgggaacctagagatgtcacagaagctgatcttctc
tgtgacataatgacctgggaccagagaagatttgctagcagcagaagcca
agcacccgggcttcatccaggaatgtgttgggtgattaacattctgaaat
ttagagactgcaacacaaatcgaacggttctccggtgtaggtcctgccgt
ttaacagaaggactagtgtgctttattattttcttagaattaaattacta
gtcctggccaagtgtggtagtatatacctacagtcccaatacttggaaac
ctgattgagtgtgtcttaggggtttactgctgtgaacagacaccatgacc
aaggcaagtctcataaggacaatgtttaattggggctggcttacaggttc
attacttcaatccattatcatcaaggcaggaacagggcagcatccgggca
ggcatggttcaagatgaactgatagctctacaccttcatctgaaggttgc
tagtggaggatcgacttccaggcatctagtagagaagcccaatcccgctg
tgacacacctactgcaacatggccaccccttctaatagtgccactccccg
ggacaagcattttcaaaccatgacaaaagataaagctagcttgggatatt
aaacgagtcttagacatcctgggaaaacagtgaaccaatatctcagcaac
ttctgcacaacgacaactgctaccactactacaatctacctggaaaaaag
actgtaactcgccttggtgaaggctagaatggtgaagtactaggaaaact
ttttcattcgtacattcagtcccatctaccttgtatcatatcaactgatg
aagtagctagaagcagaaataacgtttccccgtaataaaggaaatagagg
acctgggctcaggtgagtgactaattcaa
gaattccccttacacccagccaccgcatggcagtgtgatcccactctctg
cagacttattattagaaagcccatccttatgctgagccagaaatcttctt
tgggcagtggttgccttgtcatcttgattctgctcttgaggcccctgccc
ccaccccccaaaaatccatttcttcttccctactctggccttataggcta
tttagacattcagagtctgggaccaggcccccatggcttcacctcttcgg
gtatgtcagtatctcattgttatccagggccatgagaaggactaagatag
gacacagctatgcaggggctgtgtgctcagcccagaagtagcacggcttc
tgttacctcactccagggtctatatttgttttaatgtaactagagttaga
gtcagagtctgccttcggtagccccagcaagcaaggctcagccatctgtc
ccaagaccctagttatagagacaagggactatgaaaaacaggtttgttca
atatgacacattggtccagtgacccctcaagtccatcattggagcactga
catggcgttaggtttaaacagagaagcaaggggcaagagggaagcgtagt
taaataatcctgggtttaggtgtggtttccacccacagttatagctttgg
tcttccaagaggatccaaagagcttcatacgacaagtttgattgacagga
caagttgggtgctccatgggtatggccccaccctcatgaatcgtgtccct
caaatgagaggtggactgtcccttgaaggtctcccgttctcataatccaa
agcaactcaagaagaaaaagggacggtgatgtatctccaaccacttaacc
ctgaaggggacagcgcttgagtgattaactcgcagaccttgccaggcaag
caggtgacccacagtaaggagatgggcacaaataaggcctttatccagct
tttagttatttgtgactcactgagcgtcttgcttttatacatgtctcatc
agtgctgcctagccactggttcttcatgggggtcttgcctggtgtgatcc
tcaatgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45349484_45350560
seq2: B6Ng01-165H19.b_44_1122 (reverse)

seq1  TTGAACTAGTCACTCACCTG-GCTCAGGTCCTCTATTTCC-TTATTTCTG  48
      ||||| |||||||||||||| || |||||||||||||||| ||||| | |
seq2  TTGAATTAGTCACTCACCTGAGCCCAGGTCCTCTATTTCCTTTATTACGG  50

seq1  GGGAACAGTATTTCCTGC-TCTAGCTACTTCATAGGTTTATA-GATAC-A  95
      || |||  ||||| |||| ||||||||||||||  ||| ||| ||||| |
seq2  GGAAACGTTATTT-CTGCTTCTAGCTACTTCATCAGTTGATATGATACAA  99

seq1  GGTAGATGAGACTGAATGTACGAAAAGAAAAAGTTTACCAAGTACTTCAC  145
      |||||||| ||||||||||||| || |||||||||| || ||||||||||
seq2  GGTAGATGGGACTGAATGTACG-AATGAAAAAGTTTTCCTAGTACTTCAC  148

seq1  CATTTCAGCCTT-ACCAAGGCGAGTTACTGAC-TTTTTCCAGGTTTGTTG  193
      ||||  |||||| ||||||||||||||| | | |||||||||||   |||
seq2  CATTCTAGCCTTCACCAAGGCGAGTTACAGTCTTTTTTCCAGGTAGATTG  198

seq1  TAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAGATATTGGTT  243
      |||| || || |  ||||| |||| ||  |  |||| |||||||||||||
seq2  TAGTAGTGGTAGCAGTTGTCGTTG-TGCAGAAGTTGCTGAGATATTGGTT  247

seq1  CACTGTATATCCCAGGCTGGTCTTAGACTCATTTTATATCCCAAGCTAGC  293
      |||||| | ||||||| | |||| |||||| ||| |||||||||||||||
seq2  CACTGT-TTTCCCAGGAT-GTCTAAGACTCGTTTAATATCCCAAGCTAGC  295

seq1  CTTATCCTTTGTCATGGTTTGAATATGCTTGTCCCAGGGAGTGGCACTAT  343
       ||||| |||||||||||||||| ||||||||||| ||||||||||||||
seq2  TTTATCTTTTGTCATGGTTTGAAAATGCTTGTCCCGGGGAGTGGCACTAT  345

seq1  TAGAAGGGGTGGCCCTGTTGGACTAGGTGTGTCACTGTGGGATTGGGCTT  393
      |||||||||||||| ||||| | |||||||||||| | ||||||||||||
seq2  TAGAAGGGGTGGCCATGTTGCAGTAGGTGTGTCACAGCGGGATTGGGCTT  395

seq1  CTATACTAGCTGCCTGGAAGTCGATCTTCCACTAGCAACCTTCAGATGAA  443
      || |||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CTCTACTAGATGCCTGGAAGTCGATCCTCCACTAGCAACCTTCAGATGAA  445

seq1  GGTGTAGAGCTCTCAGCTCCTCCTGAACCATGCCTGCCCGGATGCTGCCC  493
      ||||||||||| |||| || || |||||||||||||||||||||||||||
seq2  GGTGTAGAGCTATCAGTTCATCTTGAACCATGCCTGCCCGGATGCTGCCC  495

seq1  TGTTCCTGCCTTGATGATAATGGACTGAACTTCTGAACCTGTAAGCCAGC  543
      |||||||||||||||||||||||| |||| |  |||||||||||||||||
seq2  TGTTCCTGCCTTGATGATAATGGATTGAAGTAATGAACCTGTAAGCCAGC  545

seq1  CCCAATTAAACATTGTCCTTATGAGACTTGCCTTGGTCATGGTGTCTGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAAACATTGTCCTTATGAGACTTGCCTTGGTCATGGTGTCTGTT  595

seq1  CACAGCAGTAAAACCCTAAGACACACTCACTCAGGTTTCCAAGTATTGGG  643
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CACAGCAGTAAACCCCTAAGACACACTCAATCAGGTTTCCAAGTATTGGG  645

seq1  ACTGTAGGTATATACTACCACACTTGGCCAGGACTAGTAATTTAATTCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGTATATACTACCACACTTGGCCAGGACTAGTAATTTAATTCTA  695

seq1  AGAAAATAATAAAGCACACTAGTCCTTCTGTTAAACGGCAGGACCTACAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAATAAAGCACACTAGTCCTTCTGTTAAACGGCAGGACCTACAC  745

seq1  CGGAGAACCGTTCGATTTGTGTTGCAGTCTCTAAATTTCAGAATGTTAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAACCGTTCGATTTGTGTTGCAGTCTCTAAATTTCAGAATGTTAAT  795

seq1  CACCCAACACATTCCTGGATGAAGCCCGGGTGCTTGGCTTCTGCTGCTAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAACACATTCCTGGATGAAGCCCGGGTGCTTGGCTTCTGCTGCTAG  845

seq1  CAAATCTTCTCTGGTCCCAGGTCATTATGTCACAGAGAAGCTCAGCTTCT  893
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAATCTTCTCTGGTCCCAGGTCATTATGTCACAGAGAAGATCAGCTTCT  895

seq1  GTGACATCTCTAGGTTCCCATTTTCTTGTTTGTTTTATTATTAATGGTAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTCTAGGTTCCCATTTTCTTGTTTGTTTTATTATTAATGGTAG  945

seq1  TGGTGGGTGGGGGATGGGGGGGCAGTAGGAAGAAGGGAGAAGGAGGGAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTGGGGGATGGGGGGGCAGTAGGAAGAAGGGAGAAGGAGGGAGA  995

seq1  AAATGAGTCAGAGAATGGGAATGAATCTGAGTGCCTAATTATATAGCCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCAGAGAATGGGAATGAATCTGAGTGCCTAATTATATAGCCTG  1045

seq1  GAATCACTGTGTAGCACAGGCTGGTCCTGAATTC  1077
      ||||||||||||||||||||||||||||||||||
seq2  GAATCACTGTGTAGCACAGGCTGGTCCTGAATTC  1079

seq1: chr4_45205127_45206200
seq2: B6Ng01-165H19.g_66_1126

seq1  GAATTCCCCTTACACCCAGCCACCGCAGGGCAGTGTGATCCCACTCTCTG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCCCTTACACCCAGCCACCGCATGGCAGTGTGATCCCACTCTCTG  50

seq1  CAGACTTATTATTAGAAAGCCCATCCTTATGCTGAGCCAGAAATCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTATTATTAGAAAGCCCATCCTTATGCTGAGCCAGAAATCTTCTT  100

seq1  TGGGCAGTGGTTGCCTTGTCATCTTGATTCTGCTCTTGAGGCCCCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGGTTGCCTTGTCATCTTGATTCTGCTCTTGAGGCCCCTGCCC  150

seq1  CCACCCCCCAAAAATCCATTTCTTCTTCCCTACTCTGGCCTTATAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCAAAAATCCATTTCTTCTTCCCTACTCTGGCCTTATAGGCTA  200

seq1  TTTAGACATTCAGAGTCTGGGACCAGGCCCCCATGGCTTCACCTCTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATTCAGAGTCTGGGACCAGGCCCCCATGGCTTCACCTCTTCGG  250

seq1  GTATGTCAGTATCTCATTGTTATCCAGGGCCATGAGAAGGACTAAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCAGTATCTCATTGTTATCCAGGGCCATGAGAAGGACTAAGATAG  300

seq1  GACACAGCTATGCAGGGGCTGTGTGCTCAGCCCAGAAGTAGCACGGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTATGCAGGGGCTGTGTGCTCAGCCCAGAAGTAGCACGGCTTC  350

seq1  TGTTACCTCACTCCAGGGTCTATATTTGTTTTAGTGTAACTAGAGTTAGA  400
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTACCTCACTCCAGGGTCTATATTTGTTTTAATGTAACTAGAGTTAGA  400

seq1  GTCAGAGTCTGCCTTCGGTAGCCCCAGCAAGCAAGGCTCAGCCATCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTCTGCCTTCGGTAGCCCCAGCAAGCAAGGCTCAGCCATCTGTC  450

seq1  CCAAGACCCTAGTTATAGAGACAAGGGACTATGAAAAACAGGTTTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCCTAGTTATAGAGACAAGGGACTATGAAAAACAGGTTTGTTCA  500

seq1  ATATGACACATTGGTCCAGTGACCCCTCAAGTCCATCATTGGAGCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACACATTGGTCCAGTGACCCCTCAAGTCCATCATTGGAGCACTGA  550

seq1  CATGGCGTTAGGTTTAAACAGAGAAGCAAGGGGCAAGAGGGAAGCGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTAGGTTTAAACAGAGAAGCAAGGGGCAAGAGGGAAGCGTAGT  600

seq1  TAAATAATCCTGGG-TTAGGTGTGGTTTCCACCCACAGTTATAGCTTTGG  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAATAATCCTGGGTTTAGGTGTGGTTTCCACCCACAGTTATAGCTTTGG  650

seq1  TCTTCCAAGAGGATCCAAAGAGCTTCATACGACAAGTTTGATTGACAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAGAGGATCCAAAGAGCTTCATACGACAAGTTTGATTGACAGGA  700

seq1  CAAGTTGGGTGCTCCAT-GGTATGGCCCCACCCTCATGAATCGTGTCCCT  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAGTTGGGTGCTCCATGGGTATGGCCCCACCCTCATGAATCGTGTCCCT  750

seq1  CAAATGAGAGGTGGACTGTCCCTTGAAGGTCTCCCGTTCTCATAATCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGAGGTGGACTGTCCCTTGAAGGTCTCCCGTTCTCATAATCCAA  800

seq1  AGCAACTCAAGAAGAAAAAGGGACGGTGATGTATCTCCAACCACTTAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCAAGAAGAAAAAGGGACGGTGATGTATCTCCAACCACTTAACC  850

seq1  CTGAAAGGGGACAGCGCTTGAGTGATTAACTCGCAGACCTTGCCAGGCAA  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-AAGGGGACAGCGCTTGAGTGATTAACTCGCAGACCTTGCCAGGCAA  899

seq1  GCAGGTGACCCACAGTAAAGGAGATGGGCACAAAATAAAGGCCTTTATCC  948
      |||||||||||||||| |||||||||||||||||   |||||||||||||
seq2  GCAGGTGACCCACAGT-AAGGAGATGGGCACAAA--TAAGGCCTTTATCC  946

seq1  AGCTTTTAGTTATTTTGTGGACTCAACTGAGGCGTCTGTGCTTTTTAGTA  998
      |||||||||||| ||||| ||||| ||||| |||||| |||||||   ||
seq2  AGCTTTTAGTTA-TTTGT-GACTC-ACTGA-GCGTCT-TGCTTTT--ATA  989

seq1  CATGTCTCATCAGTGCTGCCTAGGCCCACTGTGTCCTCCATGGGGGGTCC  1048
      |||||||||||||||||||||||  |||||| || || ||||||||   |
seq2  CATGTCTCATCAGTGCTGCCTAG--CCACTG-GTTCTTCATGGGGG--TC  1034

seq1  TGGCCTGGTGTG-TCCTCCATGGGGGG  1074
      | |||||||||| ||||| ||||||||
seq2  TTGCCTGGTGTGATCCTCAATGGGGGG  1061