BAC Information

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BAC

Clone NameB6Ng01-165J18
Chromosome4 (Build37)
Map Location 118,006,440 - 118,151,344
singlet/doubletdoublet
Overlap geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1
Upstream gene4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf
Downstream geneLOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165J18.bB6Ng01-165J18.g
ACCDH957624DH957625
length1,017170
definitionDH957624|Mus musculus domesticus DNA, BAC clone: B6Ng01-165J18, 5' end.DH957625|Mus musculus domesticus DNA, BAC clone: B6Ng01-165J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,150,327 - 118,151,344)(118,006,440 - 118,006,609)
sequence
gaattccttccccgctgagctttagtcatccatgaggcctccccatagtg
tgataccaggatgtccaaactttccctctgtgggatctcatggtggcctc
tgggttccctgacccaggtcatctccacaatctgtccctccctgtgtcta
gggctgcagagtgagggcccagtccgagaaagccgggcagctgaagaagg
cctggatcagcagctggtcctggctgtggtaggttccgtctctgccacct
gcctcaccatcctggctgcccttttagccttggtgtgtatccgaagaagc
tgcctacatcggagacgcaccttcacttaccagtcaggatcggtcagtgt
cccatacccacggggtaaatggttctgtctattgtgtgtgattgtatcca
catacatgcaagtatatacatatatgcaaacgcccgtgcatgacacaagt
tttttttttgtttgtttgtttgtttggttttttgagacagggtttctctg
tgtagccctggttgtcctggaacttacagactatattcataaagattcca
gggccgggcagtggtggtgcacgcctttaatcccagcatttgggaggcag
aggcagacggatttatgcgttcgaggccagcctggtctacagagtgagtt
ccaggacagccaggactacacagggaaactctgtatcgaaaaaatcaaaa
aaccagaccaaaaaaaaaaaaaaaagattccagggcctctctgggaaact
gtcctcctgagcttagctgtgctttctcaaggggcaacagtgtgtgggcc
acactgttcacataactgcctttgaccctctagaagtatacaaggcctgc
agcctcacctgggctcccataggagagagttcactctataaacttttctg
gcttcttaggcttcttacaggctatgcctctgtcctcaggcctatacaga
cacgggttgggaaggttactgatactctcagaaatccagactcaccctgt
cttgtccaagtcacccc
catggactcgacaaatgcagatgctggagctgtggtgccgtgcaggttgg
ggaagaaagatactgaagtcactataacataaacaagtttgtgcgcgtgt
gcttgtgcgtgtgcatgtgtgtgtgcatgtgcgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118150327_118151344
seq2: B6Ng01-165J18.b_45_1061 (reverse)

seq1  GGGGTGAACATGACAAGACAGGGTGAGTCTGGATTCCTGAGAGTATCAGT  50
      |||||||    |||||||||||||||||||||||| ||||||||||||||
seq2  GGGGTGACTTGGACAAGACAGGGTGAGTCTGGATTTCTGAGAGTATCAGT  50

seq1  ACCCCTTCCCCACCCCGTGTCTGTATAGGCCTGAGGGCAGAGGCATAGCC  100
      | ||  | |||| ||||||||||||||||||||||| |||||||||||||
seq2  AACC--TTCCCAACCCGTGTCTGTATAGGCCTGAGGACAGAGGCATAGCC  98

seq1  TGTAAGAAGCCTAAGAAGCCAGAAAAGTTTATAGAGTGAACCTCTCTCCT  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTAAGAAGCCTAAGAAGCCAGAAAAGTTTATAGAGTGAA-CTCTCTCCT  147

seq1  ATGGGAGCCCAGGTGAGGCTGCAGGCCTTGTATACTTCTAGAGGGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCCCAGGTGAGGCTGCAGGCCTTGTATACTTCTAGAGGGTCAAA  197

seq1  GGCAGTTATGTGAACAGTGTGG-CCACACACTGTTGCCCCTTGAG-AAGC  248
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GGCAGTTATGTGAACAGTGTGGCCCACACACTGTTGCCCCTTGAGAAAGC  247

seq1  ACAGCTAAGCTCAGGAGGACAGTTTCCCAGAGAGGCCCTGGAATCTTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAGCTCAGGAGGACAGTTTCCCAGAGAGGCCCTGGAATCTTTTT  297

seq1  TTTTTTTTTTTGGTCTGGTTTTTTGATTTTTTCGATACAGAGTTTCCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTCTGGTTTTTTGATTTTTTCGATACAGAGTTTCCCTG  347

seq1  TGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  397

seq1  ACGCATAAATCCGTCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATAAATCCGTCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGT  447

seq1  GCACCACCACTGCCCGGCCCTGGAATCTTTATGAATATAGTCTGTAAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACTGCCCGGCCCTGGAATCTTTATGAATATAGTCTGTAAGTT  497

seq1  CCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAACA  547

seq1  AACAAACAAACAAAAAAAAAACTTGTGTCATGCACGGGCGTTTGCATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAAAAAACTTGTGTCATGCACGGGCGTTTGCATATA  597

seq1  TGTATATACTTGCATGTATGTGGATACAATCACACACAATAGACAGAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACTTGCATGTATGTGGATACAATCACACACAATAGACAGAACC  647

seq1  ATTTACCCCGTGGGTATGGGACACTGACCGATCCTGACTGGTAAGTGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCCGTGGGTATGGGACACTGACCGATCCTGACTGGTAAGTGAAG  697

seq1  GTGCGTCTCCGATGTAGGCAGCTTCTTCGGATACACACCAAGGCTAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTCTCCGATGTAGGCAGCTTCTTCGGATACACACCAAGGCTAAAAG  747

seq1  GGCAGCCAGGATGGTGAGGCAGGTGGCAGAGACGGAACCTACCACAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGGATGGTGAGGCAGGTGGCAGAGACGGAACCTACCACAGCCA  797

seq1  GGACCAGCTGCTGATCCAGGCCTTCTTCAGCTGCCCGGCTTTCTCGGACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCTGCTGATCCAGGCCTTCTTCAGCTGCCCGGCTTTCTCGGACT  847

seq1  GGGCCCTCACTCTGCAGCCCTAGACACAGGGAGGGACAGATTGTGGAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTCACTCTGCAGCCCTAGACACAGGGAGGGACAGATTGTGGAGAT  897

seq1  GACCTGGGTCAGGGAACCCAGAGGCCACCATGAGATCCCACAGAGGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGTCAGGGAACCCAGAGGCCACCATGAGATCCCACAGAGGGAAA  947

seq1  GTTTGGACATCCTGGTATCACACTATGGGGAGGCCTCATGGATGACTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACATCCTGGTATCACACTATGGGGAGGCCTCATGGATGACTAAA  997

seq1  GCTCAGCGGGGAAGGAATTC  1018
      ||||||||||||||||||||
seq2  GCTCAGCGGGGAAGGAATTC  1017

seq1: chr4_118006440_118006609
seq2: B6Ng01-165J18.g_74_243

seq1  CATGGACTCGACAAATGCAGATGCTGGAGCTGTGGTGCCGTGCAGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTCGACAAATGCAGATGCTGGAGCTGTGGTGCCGTGCAGGTTGG  50

seq1  GGAAGAAAGATACTGAAGTCACTATAACATAAACAAGTTTGTGCGCGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGATACTGAAGTCACTATAACATAAACAAGTTTGTGCGCGTGT  100

seq1  GCTTGTGCGTGTGCATGTGTGTGTGCATGTGCGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCGTGTGCATGTGTGTGTGCATGTGCGTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGT  170
      ||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGT  170