BAC Information

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BAC

Clone NameB6Ng01-165K20
Chromosome4 (Build37)
Map Location 48,609,149 - 48,681,970
singlet/doubletdoublet
Overlap geneTmeff1, 2310039E09Rik
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik
Downstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K20.bB6Ng01-165K20.g
ACCDH957671DH957672
length1,0291,007
definitionDH957671|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K20, 5' end.DH957672|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,680,941 - 48,681,970)(48,609,149 - 48,610,155)
sequence
gaattcagtaaataggacagattaactaaaacatttctactttacagtgt
agatgatgaaacatgtagtaagagaagttattatataatttctatttgct
attcataaaaagaccagttcagatactcttgtttgtccggagtgctttca
gacagcaaatactgccaaccttcaagcaggctgtcgtataataaacgtgc
ttgctccggaggagacttctttggactctttaacctgaacttgttaccct
gcacatacaaagaaagatcaagcacacactctgtgccacttggacaatca
ctggtctgtctttgttctgtgaaaactgtataaataaagaagcagctgat
tactaatcggtcagctgagagattcccctggcctggctccctccctcccc
tagatgatcactcctctacaggccaccctgtcatcaaagaccctccaaca
ctcctctctgtgcctgcggaaggctctctgggaaggccccagcagggaag
agtttgccacccaagagaacctaagttcagaccccggaactcacgttaaa
aaggagaagagtttggactcaggaggtaaaaaacacttgccaagcaaacc
tgatggcctgaattcagatcccacggcaggaggaaaaccagttcccagca
actgaatggtgtttcattcaaaactcctcagaggtaaaaggtatctcaaa
attcagagtgaaattgactttgggaaaattctataccatcccaggatggc
ttcagatcaagcgaagtctcctatcaaatgagtcatcttaaaagctttat
ttggctgccacagtggtccatgaccatagccccagttcttaggaggactc
gggaggaggaccacaagatcaacaccagcctgaattacacagtagggcgg
ggaggggtgaagggcaaagccacttaagagaagaacagactctgccagtg
tgtagaagagaaccagctagagacagggctagtacaggcacaggtggaaa
gaaactggtgtgccatttagaaggttatt
gaattcctaacagatggatacacagtttattggattaattcctagcagat
ggatacttggggtgttgtttgaaaggatgaacatgctttgatgtggaggc
atgtgcaaatggaccagccactgggaaggctgttgctggagcatcactcg
agcctcaattccagggcagtcctgggcaacacagctagacaatgtcaaaa
cagaaacaacaggaaggatagatgtggaaaagcgcttctcgtatgttgta
cattttgtttttttttttttttctgtcataattttctagacatgaaattg
tttggtaaaaggataaagacaagattttatatatatggccacgagagttt
gctggaatgttctcctagctggcttcatgcttagctttcttacctttgcc
ggcacagatgctgatagcaatggagtgtaagacatttgcatggtgcatgc
tgctcgaaggtccttccatatctgtaatcctctaccaacatcttaagaga
ggtcctgcctcccttgtacagtgtggttaattactgtgattgccccgctg
ataagtgggaaggaagccaggggactactggagatggtatacaggctgtg
ccctaaacatcacggactagtgcacaatcgttatctgtctcagattccca
tattaagtagcatgatggttttcatctgatttacagaaggagtaaaatct
ttgcccatctaaaacctgcagttcagtgggctttatatgcctgcccaatg
tcattgtcacctcctaagaacatgtccatcactttaggaagaaacctgaa
tcacactgtggtcatgaaccaccagtcccagtaaccccaagaaagattgt
cattcatgtttttctttcaagctttgttacgtgggcatacatccgttcat
gtggggtacggttccttcgtggagtcaggggacaccttaggtgtccctct
ccacattccacctttgtcaagacctagtcccttatctgggtttttccctg
tgcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48680941_48681970
seq2: B6Ng01-165K20.b_43_1071 (reverse)

seq1  AATAACC-TCTAAATGGCACACCAGTTTCTTT-CACCTGTGCCCTGTGCT  48
      ||||||| |||||||||||||||||||||||| |||||||| ||||| ||
seq2  AATAACCTTCTAAATGGCACACCAGTTTCTTTCCACCTGTG-CCTGTACT  49

seq1  -GGCCTGTCTCTAGCTGGTTCTCTTCTGACACACTTGGCAGAGTCTGTTC  97
       | |||||||||||||||||||||||| |||||| |||||||||||||||
seq2  AGCCCTGTCTCTAGCTGGTTCTCTTCT-ACACAC-TGGCAGAGTCTGTTC  97

seq1  TTCTCTTAAGTGGCTTTGCCCTTCACCCCTCCCCCGCCCTACTGTGTAAT  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTCTTAAGTGGCTTTGCCCTTCACCCCT-CCCCGCCCTACTGTGTAAT  146

seq1  TCAGGCTGGTGTTGATCTTGTGGTCCTCCTCCCGAGTCCTCCTAAGAACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGTGTTGATCTTGTGGTCCTCCTCCCGAGTCCTCCTAAGAACT  196

seq1  GGGGCTATGGTCATGGACCACTGTGGCAGCCAAATAAAGCTTTTAAGATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATGGTCATGGACCACTGTGGCAGCCAAATAAAGCTTTTAAGATG  246

seq1  ACTCATTTGATAGGAGACTTCGCTTGATCTGAAGCCATCCTGGGATGGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTGATAGGAGACTTCGCTTGATCTGAAGCCATCCTGGGATGGTA  296

seq1  TAGAATTTTCCCAAAGTCAATTTCACTCTGAATTTTGAGATACCTTTTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTCCCAAAGTCAATTTCACTCTGAATTTTGAGATACCTTTTAC  346

seq1  CTCTGAGGAGTTTTGAATGAAACACCATTCAGTTGCTGGGAACTGGTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAGTTTTGAATGAAACACCATTCAGTTGCTGGGAACTGGTTTT  396

seq1  CCTCCTGCCGTGGGATCTGAATTCAGGCCATCAGGTTTGCTTGGCAAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCGTGGGATCTGAATTCAGGCCATCAGGTTTGCTTGGCAAGTG  446

seq1  TTTTTTACCTCCTGAGTCCAAACTCTTCTCCTTTTTAACGTGAGTTCCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACCTCCTGAGTCCAAACTCTTCTCCTTTTTAACGTGAGTTCCGG  496

seq1  GGTCTGAACTTAGGTTCTCTTGGGTGGCAAACTCTTCCCTGCTGGGGCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAACTTAGGTTCTCTTGGGTGGCAAACTCTTCCCTGCTGGGGCCT  546

seq1  TCCCAGAGAGCCTTCCGCAGGCACAGAGAGGAGTGTTGGAGGGTCTTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGAGCCTTCCGCAGGCACAGAGAGGAGTGTTGGAGGGTCTTTGA  596

seq1  TGACAGGGTGGCCTGTAGAGGAGTGATCATCTAGGGGAGGGAGGGAGCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTGGCCTGTAGAGGAGTGATCATCTAGGGGAGGGAGGGAGCCA  646

seq1  GGCCAGGGGAATCTCTCAGCTGACCGATTAGTAATCAGCTGCTTCTTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGGAATCTCTCAGCTGACCGATTAGTAATCAGCTGCTTCTTTAT  696

seq1  TTATACAGTTTTCACAGAACAAAGACAGACCAGTGATTGTCCAAGTGGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGTTTTCACAGAACAAAGACAGACCAGTGATTGTCCAAGTGGCA  746

seq1  CAGAGTGTGTGCTTGATCTTTCTTTGTATGTGCAGGGTAACAAGTTCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGTGCTTGATCTTTCTTTGTATGTGCAGGGTAACAAGTTCAGG  796

seq1  TTAAAGAGTCCAAAGAAGTCTCCTCCGGAGCAAGCACGTTTATTATACGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGTCCAAAGAAGTCTCCTCCGGAGCAAGCACGTTTATTATACGA  846

seq1  CAGCCTGCTTGAAGGTTGGCAGTATTTGCTGTCTGAAAGCACTCCGGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCTTGAAGGTTGGCAGTATTTGCTGTCTGAAAGCACTCCGGACA  896

seq1  AACAAGAGTATCTGAACTGGTCTTTTTATGAATAGCAAATAGAAATTATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGTATCTGAACTGGTCTTTTTATGAATAGCAAATAGAAATTATA  946

seq1  TAATAACTTCTCTTACTACATGTTTCATCATCTACACTGTAAAGTAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTTCTCTTACTACATGTTTCATCATCTACACTGTAAAGTAGAAA  996

seq1  TGTTTTAGTTAATCTGTCCTATTTACTGAATTC  1030
      |||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTTAATCTGTCCTATTTACTGAATTC  1029

seq1: chr4_48609149_48610155
seq2: B6Ng01-165K20.g_69_1075

seq1  GAATTCCTAACAGATGGATACACAGTTTATTGGATTAATTCCTAGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAGATGGATACACAGTTTATTGGATTAATTCCTAGCAGAT  50

seq1  GGATACTTGGGGTGTTGTTTGAAAGGATGAACATGCTTTGATGTGGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTGGGGTGTTGTTTGAAAGGATGAACATGCTTTGATGTGGAGGC  100

seq1  ATGTGCAAATGGACCAGCCACTGGGAAGGCTGTTGCTGGAGCATCACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAATGGACCAGCCACTGGGAAGGCTGTTGCTGGAGCATCACTCG  150

seq1  AGCCTCAATTCCAGGGCAGTCCTGGGCAACACAGCTAGACAATGTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAATTCCAGGGCAGTCCTGGGCAACACAGCTAGACAATGTCAAAA  200

seq1  CAGAAACAACAGGAAGGATAGATGTGGAAAAGCGCTTCTCGTATGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAACAGGAAGGATAGATGTGGAAAAGCGCTTCTCGTATGTTGTA  250

seq1  CATTTTGTTTTTTTTTTTTTTTCTGTCATAATTTTCTAGACATGAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTTTTTTTTTTTTTCTGTCATAATTTTCTAGACATGAAATTG  300

seq1  TTTGGTAAAAGGATAAAGACAAGATTTTATATATATGGCCACGAGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAAAGGATAAAGACAAGATTTTATATATATGGCCACGAGAGTTT  350

seq1  GCTGGAATGTTCTCCTAGCTGGCTTCATGCTTAGCTTTCTTACCTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATGTTCTCCTAGCTGGCTTCATGCTTAGCTTTCTTACCTTTGCC  400

seq1  GGCACAGATGCTGATAGCAATGGAGTGTAAGACATTTGCATGGTGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGATGCTGATAGCAATGGAGTGTAAGACATTTGCATGGTGCATGC  450

seq1  TGCTCGAAGGTCCTTCCATATCTGTAATCCTCTACCAACATCTTAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGAAGGTCCTTCCATATCTGTAATCCTCTACCAACATCTTAAGAGA  500

seq1  GGTCCTGCCTCCCTTGTACAGTGTGGTTAATTACTGTGATTGCCCCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCCTCCCTTGTACAGTGTGGTTAATTACTGTGATTGCCCCGCTG  550

seq1  ATAAGTGGGAAGGAAGCCAGGGGACTACTGGAGATGGTATACAGGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGGAAGGAAGCCAGGGGACTACTGGAGATGGTATACAGGCTGTG  600

seq1  CCCTAAACATCACGGACTAGTGCACAATCGTTATCTGTCTCAGATTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACATCACGGACTAGTGCACAATCGTTATCTGTCTCAGATTCCCA  650

seq1  TATTAAGTAGCATGATGG-TTTCATCTGATTTACAGAAGGAGTAAAATCT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTAAGTAGCATGATGGTTTTCATCTGATTTACAGAAGGAGTAAAATCT  700

seq1  TTG-CCATCTAAAACCTGCAGTTCAGTGGGCTTTATATGCCTGCCCAATG  748
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATCTAAAACCTGCAGTTCAGTGGGCTTTATATGCCTGCCCAATG  750

seq1  TCATTGTCACCTCCTAAGAACATGTCCATCACTTTAGGAAGAAACCTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCACCTCCTAAGAACATGTCCATCACTTTAGGAAGAAACCTGAA  800

seq1  TCACACTGTGGTCATGAACCACCAGTCCCAGTAACCCCAAGAAAGAATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCACACTGTGGTCATGAACCACCAGTCCCAGTAACCCCAAGAAAG-ATTG  849

seq1  TCATTCATGTTTTTCTTTCAAGCTTTGTTACGTGGGCATACATCCGTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGTTTTTCTTTCAAGCTTTGTTACGTGGGCATACATCCGTTCA  899

seq1  TGTGGGGTACGGTTCCTTCGTGGAGGTCAGGGGACAACCTTAGGTGTCCC  948
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TGTGGGGTACGGTTCCTTCGTGGA-GTCAGGGGAC-ACCTTAGGTGTCCC  947

seq1  TCTCCACATTCCACCTTTGTCAAGACCTAGTCCCTTATCT-GGTTTTTCC  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCCACATTCCACCTTTGTCAAGACCTAGTCCCTTATCTGGGTTTTTCC  997

seq1  CTGTGCATTC  1007
      ||||||||||
seq2  CTGTGCATTC  1007