BAC Information

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BAC

Clone NameB6Ng01-165K21
Chromosome4 (Build37)
Map Location 48,609,149 - 48,681,970
singlet/doubletdoublet
Overlap geneTmeff1, 2310039E09Rik
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik
Downstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K21.bB6Ng01-165K21.g
ACCDH957673DH957674
length1,0701,063
definitionDH957673|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K21, 5' end.DH957674|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,680,748 - 48,681,970)(48,609,149 - 48,610,235)
sequence
gaattcagtaaataggacagattaactaaaacatttctactttacagtgt
agatgatgaaacatgtagtaagagaagttattatataatttctatttgct
attcataaaaagaccagttcagatactcttgtttgtccggagtgctttca
gacagcaaatactgccaaccttcaagcaggctgtcgtataataaacgtgc
ttgctccggaggagacttctttggactctttaacctgaacttgttaccct
gcacatacaaagaaagatcaagcacacactctgtgccacttggacaatca
ctggtctgtctttgttctgtgaaaactgtataaataaagaagcagctgat
tactaatcggtcagctgagagattcccctggcctggctccctccctcccc
tagatgatcactcctctacaggccaccctgtcatcaaagaccctccaaca
ctcctctctgtgcctgcggaaggctctctgggaaggccccagcagggaag
agtttgccacccaagagaacctaagttcagaccccggaactcacgttaaa
aaggagaagagtttggactcaggaggtaaaaaacacttgccaagcaaacc
tgatggcctgaattcagatcccacggcaggaggaaaaccagttcccagca
actgaatggtgtttcattcaaaactcctcagaggtaaaaggtatctcaaa
attcagagtgaaattgactttgggaaaattctataccatcccaggatggc
ttcagatcaagcgaagtctcctatcaaatgagtcatcttaaaagctttat
ttggctgccacagtggtccatgaccatagccccagttcttaggaggactc
gggaggaggaccacaagatcaacaccagcctgaattacacagtaggcggg
gaaggggtgaagggcaaagccactttagagagaacagacttcttgccagt
ggtgtcagatgagaccagcctagagacaggccagccacaaggcacaagtg
aagaacctgcttgccctttgaggtttttttctaaacacaactgccaaact
tcgattacgacttttttttt
gaattcctaacagatggatacacagtttattggattaattcctagcagat
ggatacttggggtgttgtttgaaaggatgaacatgctttgatgtggaggc
atgtgcaaatggaccagccactgggaaggctgttgctggagcatcactcg
agcctcaattccagggcagtcctgggcaacacagctagacaatgtcaaaa
cagaaacaacaggaaggatagatgtggaaaagcgcttctcgtatgttgta
cattttgtttttttttttttttctgtcataattttctagacatgaaattg
tttggtaaaaggataaagacaagattttatatatatggccacgagagttt
gctggaatgttctcctagctggcttcatgcttagctttcttacctttgcc
ggcacagatgctgatagcaatggagtgtaagacatttgcatggtgcatgc
tgctcgaaggtccttccatatctgtaatcctctaccaacatcttaagaga
ggtcctgcctcccttgtacagtgtggttaattactgtgattgccccgctg
ataagtgggaaggaagccaggggactactggagatggtatacaggctgtg
ccctaaacatcacggactagtgcacaatcgttatctgtctcagattccca
tattaagtagcatgatggtttcatctgatttacagaaggagtaaaatctt
tgccatctaaaacctgcagttcagtgggctttatatgcctgcccaatgtc
attgtcacctcctaagaacatgtccatcactttaggaagaaacctgaatc
acactgtggtcatgaaccaccagtcccagtaaccccaagaaagaattgtc
attcatgtttttctttcaagctttgttacgtgggcatacatccgttcatg
tgggtacgttcctcgtgaggtcagggacaccttagtgtcctctccacatt
tcactttgtcagactagtcccttatctgttttccctgtgcatcaaggtag
ctggcctggagctggtccctgtctcaatctttctcaccatgaaaggctga
cattacaaagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48680748_48681970
seq2: B6Ng01-165K21.b_49_1118 (reverse)

seq1  AAAAAAAAAGTCATAATTCACCGGGCAGTGGTTGCACGCCTTTAATCCTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGAGGCAGGTGGATTTATGAGTTCTAGGCCAGCCTGGTCTACAAAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTTCCAGGATAGCCAGGGCTACACAGAGATACCCTGTCTCAAAAAAAA  150
                                                    ||||
seq2  ----------------------------------------------AAAA  4

seq1  AAAAAATCGTAATTCCTGAAGTTTTTGCCTGTTGTGTTTTAGAAATAACC  200
      ||||| |||||||    ||||  |||| | |||||||||   ||| ||||
seq2  AAAAAGTCGTAAT---CGAAG--TTTGGCAGTTGTGTTTAGAAAAAAACC  49

seq1  TCTAAATGGCACACCAGTTTCTTTCACCTGTGCCCTGT-GCTGGCCTGTC  249
      || ||| |||| | ||| ||| ||||| |||||| ||| |||||||||||
seq2  TC-AAAGGGCA-AGCAGGTTC-TTCACTTGTGCCTTGTGGCTGGCCTGTC  96

seq1  TCTA-GCTGGTTCTCTTCTGACACACTTGGCA--GAGTCTGTTCTTCTCT  296
      |||| ||||| |||| ||||||||   |||||   ||||||||| |||||
seq2  TCTAGGCTGG-TCTCATCTGACACCACTGGCAAGAAGTCTGTTC-TCTCT  144

seq1  TAAGTGGCTTTGCCCTTCACCCCTCCCCCGCCCTACTGTGTAATTCAGGC  346
       ||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  AAAGTGGCTTTGCCCTTCACCCCTTCCCCG-CCTACTGTGTAATTCAGGC  193

seq1  TGGTGTTGATCTTGTGGTCCTCCTCCCGAGTCCTCCTAAGAACTGGGGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGATCTTGTGGTCCTCCTCCCGAGTCCTCCTAAGAACTGGGGCT  243

seq1  ATGGTCATGGACCACTGTGGCAGCCAAATAAAGCTTTTAAGATGACTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATGGACCACTGTGGCAGCCAAATAAAGCTTTTAAGATGACTCAT  293

seq1  TTGATAGGAGACTTCGCTTGATCTGAAGCCATCCTGGGATGGTATAGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGAGACTTCGCTTGATCTGAAGCCATCCTGGGATGGTATAGAAT  343

seq1  TTTCCCAAAGTCAATTTCACTCTGAATTTTGAGATACCTTTTACCTCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAAGTCAATTTCACTCTGAATTTTGAGATACCTTTTACCTCTGA  393

seq1  GGAGTTTTGAATGAAACACCATTCAGTTGCTGGGAACTGGTTTTCCTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGAATGAAACACCATTCAGTTGCTGGGAACTGGTTTTCCTCCT  443

seq1  GCCGTGGGATCTGAATTCAGGCCATCAGGTTTGCTTGGCAAGTGTTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGGATCTGAATTCAGGCCATCAGGTTTGCTTGGCAAGTGTTTTTT  493

seq1  ACCTCCTGAGTCCAAACTCTTCTCCTTTTTAACGTGAGTTCCGGGGTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAGTCCAAACTCTTCTCCTTTTTAACGTGAGTTCCGGGGTCTG  543

seq1  AACTTAGGTTCTCTTGGGTGGCAAACTCTTCCCTGCTGGGGCCTTCCCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGTTCTCTTGGGTGGCAAACTCTTCCCTGCTGGGGCCTTCCCAG  593

seq1  AGAGCCTTCCGCAGGCACAGAGAGGAGTGTTGGAGGGTCTTTGATGACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTCCGCAGGCACAGAGAGGAGTGTTGGAGGGTCTTTGATGACAG  643

seq1  GGTGGCCTGTAGAGGAGTGATCATCTAGGGGAGGGAGGGAGCCAGGCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTGTAGAGGAGTGATCATCTAGGGGAGGGAGGGAGCCAGGCCAG  693

seq1  GGGAATCTCTCAGCTGACCGATTAGTAATCAGCTGCTTCTTTATTTATAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTCTCAGCTGACCGATTAGTAATCAGCTGCTTCTTTATTTATAC  743

seq1  AGTTTTCACAGAACAAAGACAGACCAGTGATTGTCCAAGTGGCACAGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACAGAACAAAGACAGACCAGTGATTGTCCAAGTGGCACAGAGT  793

seq1  GTGTGCTTGATCTTTCTTTGTATGTGCAGGGTAACAAGTTCAGGTTAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTGATCTTTCTTTGTATGTGCAGGGTAACAAGTTCAGGTTAAAG  843

seq1  AGTCCAAAGAAGTCTCCTCCGGAGCAAGCACGTTTATTATACGACAGCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGAAGTCTCCTCCGGAGCAAGCACGTTTATTATACGACAGCCT  893

seq1  GCTTGAAGGTTGGCAGTATTTGCTGTCTGAAAGCACTCCGGACAAACAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGGTTGGCAGTATTTGCTGTCTGAAAGCACTCCGGACAAACAAG  943

seq1  AGTATCTGAACTGGTCTTTTTATGAATAGCAAATAGAAATTATATAATAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGAACTGGTCTTTTTATGAATAGCAAATAGAAATTATATAATAA  993

seq1  CTTCTCTTACTACATGTTTCATCATCTACACTGTAAAGTAGAAATGTTTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTACTACATGTTTCATCATCTACACTGTAAAGTAGAAATGTTTT  1043

seq1  AGTTAATCTGTCCTATTTACTGAATTC  1223
      |||||||||||||||||||||||||||
seq2  AGTTAATCTGTCCTATTTACTGAATTC  1070

seq1: chr4_48609149_48610235
seq2: B6Ng01-165K21.g_68_1130

seq1  GAATTCCTAACAGATGGATACACAGTTTATTGGATTAATTCCTAGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAGATGGATACACAGTTTATTGGATTAATTCCTAGCAGAT  50

seq1  GGATACTTGGGGTGTTGTTTGAAAGGATGAACATGCTTTGATGTGGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTGGGGTGTTGTTTGAAAGGATGAACATGCTTTGATGTGGAGGC  100

seq1  ATGTGCAAATGGACCAGCCACTGGGAAGGCTGTTGCTGGAGCATCACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAATGGACCAGCCACTGGGAAGGCTGTTGCTGGAGCATCACTCG  150

seq1  AGCCTCAATTCCAGGGCAGTCCTGGGCAACACAGCTAGACAATGTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAATTCCAGGGCAGTCCTGGGCAACACAGCTAGACAATGTCAAAA  200

seq1  CAGAAACAACAGGAAGGATAGATGTGGAAAAGCGCTTCTCGTATGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAACAGGAAGGATAGATGTGGAAAAGCGCTTCTCGTATGTTGTA  250

seq1  CATTTTGTTTTTTTTTTTTTTTCTGTCATAATTTTCTAGACATGAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTTTTTTTTTTTTTCTGTCATAATTTTCTAGACATGAAATTG  300

seq1  TTTGGTAAAAGGATAAAGACAAGATTTTATATATATGGCCACGAGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAAAGGATAAAGACAAGATTTTATATATATGGCCACGAGAGTTT  350

seq1  GCTGGAATGTTCTCCTAGCTGGCTTCATGCTTAGCTTTCTTACCTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATGTTCTCCTAGCTGGCTTCATGCTTAGCTTTCTTACCTTTGCC  400

seq1  GGCACAGATGCTGATAGCAATGGAGTGTAAGACATTTGCATGGTGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGATGCTGATAGCAATGGAGTGTAAGACATTTGCATGGTGCATGC  450

seq1  TGCTCGAAGGTCCTTCCATATCTGTAATCCTCTACCAACATCTTAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGAAGGTCCTTCCATATCTGTAATCCTCTACCAACATCTTAAGAGA  500

seq1  GGTCCTGCCTCCCTTGTACAGTGTGGTTAATTACTGTGATTGCCCCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCCTCCCTTGTACAGTGTGGTTAATTACTGTGATTGCCCCGCTG  550

seq1  ATAAGTGGGAAGGAAGCCAGGGGACTACTGGAGATGGTATACAGGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGGAAGGAAGCCAGGGGACTACTGGAGATGGTATACAGGCTGTG  600

seq1  CCCTAAACATCACGGACTAGTGCACAATCGTTATCTGTCTCAGATTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACATCACGGACTAGTGCACAATCGTTATCTGTCTCAGATTCCCA  650

seq1  TATTAAGTAGCATGATGGTTTCATCTGATTTACAGAAGGAGTAAAATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAGCATGATGGTTTCATCTGATTTACAGAAGGAGTAAAATCTT  700

seq1  TGCCATCTAAAACCTGCAGTTCAGTGGGCTTTATATGCCTGCCCAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTAAAACCTGCAGTTCAGTGGGCTTTATATGCCTGCCCAATGTC  750

seq1  ATTGTCACCTCCTAAGAACATGTCCATCACTTTAGGAAGAAACCTGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACCTCCTAAGAACATGTCCATCACTTTAGGAAGAAACCTGAATC  800

seq1  ACACTGTGGTCATGAACCACCAGTCCCAGTAACCCCAAGAAAGAATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGGTCATGAACCACCAGTCCCAGTAACCCCAAGAAAGAATTGTC  850

seq1  ATTCATGTTTTTCTTTCAAGCTTTGTTACGTGGGCATACATCCGTTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTTTTCTTTCAAGCTTTGTTACGTGGGCATACATCCGTTCATG  900

seq1  TGGGGTACGGTTCCTTCGTGGAGGTCAGGGGACAACCTTAGGTGTCCCTC  950
      | |||||| ||||| |||| ||||||| ||||| |||||| |||| ||||
seq2  T-GGGTAC-GTTCC-TCGT-GAGGTCA-GGGAC-ACCTTA-GTGT-CCTC  942

seq1  TCCACATTCCACCTTTGTCAAGACCTAGTCCCTTATCTGGTTTTTCCCTG  1000
      |||||||| || ||||||| ||| |||||||||||||||  |||||||||
seq2  TCCACATTTCA-CTTTGTC-AGA-CTAGTCCCTTATCTG--TTTTCCCTG  987

seq1  TGCATTCCAGGTTAGCTGGCCTGTGAGCTTGGGGTTCTCTTGTCTCTATC  1050
      |||||  || | ||||||||||| |||||   |||   | |||||| |||
seq2  TGCAT--CAAGGTAGCTGGCCTG-GAGCT---GGT--CCCTGTCTCAATC  1029

seq1  TCTTATCTCCACCAGAAAAGCTGACATTACAAAGACT  1087
      | || || |||   |||| ||||||||||||||||||
seq2  T-TTCTCACCA--TGAAAGGCTGACATTACAAAGACT  1063