BAC Information

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BAC

Clone NameB6Ng01-166B02
Chromosome4 (Build37)
Map Location 124,409,394 - 124,575,818
singlet/doubletdoublet
Overlap geneSf3a3, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10
Upstream gene6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, LOC664991
Downstream geneCdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166B02.bB6Ng01-166B02.g
ACCDH957949DH957950
length700777
definitionDH957949|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B02, 5' end.DH957950|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,575,119 - 124,575,818)(124,409,394 - 124,410,168)
sequence
gaattcacttgggcctggcttagaagtagaagtgagcttcctaggaggtg
gtaaagccctttctcgacccagatgggggcagagtcagagagaggcgaga
aatgtcacgtttgaactttgtcagtcaagaacatcagacggccaggggaa
tccacagccggacacagttgcattttggcccctcagagatgtgttagata
aagggtggatagctctgagaaggaagggttagtaagatggcttagtaggt
aaagtacttgccatacaaatccgagaatctcagttcaaaaacccagaaac
catgtaaaggtttttttggtactggaagctttctggagagttagcctggc
ttacggagatgttctttctcaaacaagagaggtaaaaatggacaccagag
tgtatcttctgacctccatatatacatacatacctacacacacacacaca
cacacacacacacacacaaatcatatatatacacatactcaaaaacaaaa
caaacaaaacctaacactcaaactaaaacctcagcctgagccccagctgt
ccatgatgaagtcatcacagcccaagttgccaggagaactgcttctaggg
agacctgcagcagcctgtccccttgctctattaactgagttctgttttga
ttgcagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

gaattcagtgtggagctaacagagccataccttttcaggaagaatatgaa
gactccagtggaaatgttgtgaacaagaagacatacgaggatctgaaaag
acaagggctgctctagtgctcggttccctgagaagcctgagaaaagcttc
cccaaccaaatgttcttaaagactttttgctatgtagtatctaccttgta
gaaaccttgcagattgcagagttgagatgtgttttatctttgttttatat
taaaaagatctgtgggaaaataaagccagcccttgttttggatgtgttgt
ttctgaaacccaagtttatgaattttttgtttttcttttttgagacaggg
tttctctgtatagccctggctgtcctggaactcactttgtagatcaggtt
ggactcaaactcagaaatccacctgcctctgcctcccaagtgctgggatt
aaaggtgtgtgccaccaccacccacccagcctaggtttatgaagtaactt
cgtcctttttgttttgtttttttttaatatttaatgtatgtgagtacact
gttgctgtcttcatacacaccagaagagggcatctgattccattactgat
ggttgtgagccaccttgtggttgctgggatttgaaccagacctatggaag
atcagtcaatgggtcttatccactgagccatctctccaggcctcatcctt
ttgttcttaatgccttctagccttgttctcaccagctttcccagtggctt
tagattttgggaggtaatattactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124575119_124575818
seq2: B6Ng01-166B02.b_45_744 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACCGCTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACCGCTGCAA  50

seq1  TCAAAACAGAACTCAGTTAATAGAGCAAGGGGACAGGCTGCTGCAGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGAACTCAGTTAATAGAGCAAGGGGACAGGCTGCTGCAGGTCT  100

seq1  CCCTAGAAGCAGTTCTCCTGGCAACTTGGGCTGTGATGACTTCATCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAAGCAGTTCTCCTGGCAACTTGGGCTGTGATGACTTCATCATGG  150

seq1  ACAGCTGGGGCTCAGGCTGAGGTTTTAGTTTGAGTGTTAGGTTTTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGGCTCAGGCTGAGGTTTTAGTTTGAGTGTTAGGTTTTGTTTG  200

seq1  TTTTGTTTTTGAGTATGTGTATATATATGATTTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGAGTATGTGTATATATATGATTTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTAGGTATGTATGTATATATGGAGGTCAGAAGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTAGGTATGTATGTATATATGGAGGTCAGAAGATACA  300

seq1  CTCTGGTGTCCATTTTTACCTCTCTTGTTTGAGAAAGAACATCTCCGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGTCCATTTTTACCTCTCTTGTTTGAGAAAGAACATCTCCGTAA  350

seq1  GCCAGGCTAACTCTCCAGAAAGCTTCCAGTACCAAAAAAACCTTTACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTAACTCTCCAGAAAGCTTCCAGTACCAAAAAAACCTTTACATG  400

seq1  GTTTCTGGGTTTTTGAACTGAGATTCTCGGATTTGTATGGCAAGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGGTTTTTGAACTGAGATTCTCGGATTTGTATGGCAAGTACTTT  450

seq1  ACCTACTAAGCCATCTTACTAACCCTTCCTTCTCAGAGCTATCCACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAAGCCATCTTACTAACCCTTCCTTCTCAGAGCTATCCACCCTT  500

seq1  TATCTAACACATCTCTGAGGGGCCAAAATGCAACTGTGTCCGGCTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACACATCTCTGAGGGGCCAAAATGCAACTGTGTCCGGCTGTGGA  550

seq1  TTCCCCTGGCCGTCTGATGTTCTTGACTGACAAAGTTCAAACGTGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGGCCGTCTGATGTTCTTGACTGACAAAGTTCAAACGTGACATT  600

seq1  TCTCGCCTCTCTCTGACTCTGCCCCCATCTGGGTCGAGAAAGGGCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTCTCTCTGACTCTGCCCCCATCTGGGTCGAGAAAGGGCTTTAC  650

seq1  CACCTCCTAGGAAGCTCACTTCTACTTCTAAGCCAGGCCCAAGTGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTAGGAAGCTCACTTCTACTTCTAAGCCAGGCCCAAGTGAATTC  700

seq1: chr4_124409394_124410168
seq2: B6Ng01-166B02.g_66_842

seq1  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50

seq1  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100

seq1  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150

seq1  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200

seq1  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250

seq1  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300

seq1  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350

seq1  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400

seq1  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450

seq1  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500

seq1  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550

seq1  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATCCCATTACTGAT  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATTCCATTACTGAT  600

seq1  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTAGACCTATGGAAG  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACCAGACCTATGGAAG  650

seq1  ATCAGTCAAT-GGTCTTATCCACTGAGCCATCTCTCCAGGCCCCATCCTT  699
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ATCAGTCAATGGGTCTTATCCACTGAGCCATCTCTCCAGGCCTCATCCTT  700

seq1  TTGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTCCACAGTGGC-T  748
      |||||||||||||||||||||||||||||||||||||| | ||||||| |
seq2  TTGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTTCCCAGTGGCTT  750

seq1  TAGA-TTTAGGAGGTAGTTATTACTGCC  775
      |||| ||| |||||||  |||||||| |
seq2  TAGATTTTGGGAGGTA-ATATTACTGTC  777