BAC Information

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BAC

Clone NameB6Ng01-166E08
Chromosome4 (Build37)
Map Location 135,617,191 - 135,779,477
singlet/doubletdoublet
Overlap geneId3, E2f2, Ddefl1
Upstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11
Downstream geneTcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E08.bB6Ng01-166E08.g
ACCDH958095DH958096
length1,076330
definitionDH958095|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E08, 5' end.DH958096|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,778,386 - 135,779,477)(135,617,191 - 135,617,519)
sequence
gaattcaaagccagggacctgtatggtgggaggagaggacagattctgtc
accttgtcctctgacttccatatgtatcctaggacatgcgctagtgtgca
cacatctgcacatgtgcacgccacaaaacaaatggatgtaaatttaaaag
taaggagaaaacaaaccaaaccaaaccagccatgagtggtgcacacctgt
aaccccggcaggtagcagcgcagatctttgaatttgagaacaccctgctc
tacctggcaaactctgggccagccagggctacaagggacaccctgtctca
aaacaacaaaacaaagcaaaaaccagatggaactttaaaattaattttta
gtttttttgttttgttttgcttttttttttttttttttttttttgagaca
gggtttctctacgtagccctggctgtcctggaactcactttgtagaccag
gctggcctcgacctcagaaatctgcctgcctctgcctcccaagtgctggc
cactactgcccggctcatttttaatttttttaaatagtcacttattttct
ttttcctagacaaattttctctgtgtaggcctgaacacactccattgacc
aggtggtccttgaaagcacagatctatctgcctccgcctccagagcgctg
ggattaagggtgtggtctactacacccggcttactattcacaagaaagta
taacacacaaaatgtaggcaccccagcattctgattcgaatgaggccgca
gagacaggctcggtgtttgccggtttccatctggcagacaagtcatggat
actcacaaagttgcctaagctcacatagctcagatgttagatcctaactt
ccccagttcaccctaagctcacatagctcagatgttagatcctaactccc
cagttcatctaagctcacagagctcagatgttagatctaactccccagtt
caccccctgtaaccctggaggtcacactgggactgcaccttggagtttcc
cttctcatataaaatttctcacttctaccaggaagaccagaagaggagta
aggtctcataaaggagttctagactg
atgcctagttgtgtctcccagtaaatccctagctgaagaaatgaagagag
gatgggaggcctgaagccccaacttgtcatctccatggtcccagcagcca
gtgctgggttttagaagcagcagaacatgggggtagggggagggagtagg
cagaagaggagcgagagtggcctggctttctttctgaagggttgccgcag
gactcaggtcacagcccctgtctcgagtctaagggtgttttctagaagtt
caggaactgggctgtgtgcttggaaacaagcccagatcagggaaagttgg
ccgtcggggaaaaagcattcctgaactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135778386_135779477
seq2: B6Ng01-166E08.b_49_1124 (reverse)

seq1  CAGTCTTAGAGACTCCTTTATGAGACCTTTTACTTCTTCTTTCTGGGTCT  50
      ||||| |||| ||||||||||||||||||   | ||||||     |||| 
seq2  CAGTC-TAGA-ACTCCTTTATGAGACCTTACTCCTCTTCT-----GGTC-  42

seq1  TTCCTGGTAGAAAGTGAGAAAATTTTATATTGAGAAGGGAAACTCCAAGG  100
      |||||||||| ||||||| |||||||||| ||||||||||||||||||||
seq2  TTCCTGGTAG-AAGTGAG-AAATTTTATA-TGAGAAGGGAAACTCCAAGG  89

seq1  TGCAGGTCCCAGGTTGTGGACCTCCAGGGTTACAGGGGGTGAACTGGGGA  150
      |||| |||||||  ||| ||||||||||||||||||||||||||||||||
seq2  TGCA-GTCCCAG--TGT-GACCTCCAGGGTTACAGGGGGTGAACTGGGGA  135

seq1  GTTAGGATCTAACATCTGAGCTCTGTGAGCTTAGGATGAACTGGGGAGTT  200
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTA-GATCTAACATCTGAGCTCTGTGAGCTTA-GATGAACTGGGGAGTT  183

seq1  AGGATCTAACATCTGAGCTATGTGAGCTTAGGGTGAACTGGGG-AGTTAG  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGATCTAACATCTGAGCTATGTGAGCTTAGGGTGAACTGGGGAAGTTAG  233

seq1  GATCTAACATCTGAGCTATGTGAGCTTAGGCAACTTTGTGAGTATCCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAACATCTGAGCTATGTGAGCTTAGGCAACTTTGTGAGTATCCATG  283

seq1  ACTTGTCTGCCAGATGGAAACCGGCAAACACCGAGCCTGTCTCTGCGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTGCCAGATGGAAACCGGCAAACACCGAGCCTGTCTCTGCGGCC  333

seq1  TCATTCGAATCAGAATGCTGGGGTGCCTACATTTTGTGTGTTATACTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGAATCAGAATGCTGGGGTGCCTACATTTTGTGTGTTATACTTTC  383

seq1  TTGTGAATAGTAAGCCGGGTGTAGTAGACCACACCCTTAATCCCAGCGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATAGTAAGCCGGGTGTAGTAGACCACACCCTTAATCCCAGCGCT  433

seq1  CTGGAGGCGGAGGCAGATAGATCTGTGCTTTCAAGGACCACCTGGTCAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCGGAGGCAGATAGATCTGTGCTTTCAAGGACCACCTGGTCAAT  483

seq1  GGAGTGTGTTCAGGCCTACACAGAGAAAATTTGTCTAGGAAAAAGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTTCAGGCCTACACAGAGAAAATTTGTCTAGGAAAAAGAAAAT  533

seq1  AAGTGACTATTTAAAAAAATTAAAAATGAGCCGGGCAGTAGTGGCCAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTATTTAAAAAAATTAAAAATGAGCCGGGCAGTAGTGGCCAGCA  583

seq1  CTTGGGAGGCAGAGGCAGGCAGATTTCTGAGGTCGAGGCCAGCCTGGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAGGCAGGCAGATTTCTGAGGTCGAGGCCAGCCTGGTCT  633

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCTACGTAGAGAAACCCTGTCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGGGCTACGTAGAGAAACCCTGTCTCA  683

seq1  AAAAAAAAAAAAAAAAAAAAAAAGCAAAACAAAACAAAAAAACTAAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGCAAAACAAAACAAAAAAACTAAAAAT  733

seq1  TAATTTTAAAGTTCCATCTGGTTTTTGCTTTGTTTTGTTGTTTTGAGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAGTTCCATCTGGTTTTTGCTTTGTTTTGTTGTTTTGAGACA  783

seq1  GGGTGTCCCTTGTAGCCCTGGCTGGCCCAGAGTTTGCCAGGTAGAGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCCTTGTAGCCCTGGCTGGCCCAGAGTTTGCCAGGTAGAGCAGG  833

seq1  GTGTTCTCAAATTCAAAGATCTGCGCTGCTACCTGCCGGGGTTACAGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAAATTCAAAGATCTGCGCTGCTACCTGCCGGGGTTACAGGTG  883

seq1  TGCACCACTCATGGCTGGTTTGGTTTGGTTTGTTTTCTCCTTACTTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTCATGGCTGGTTTGGTTTGGTTTGTTTTCTCCTTACTTTTAA  933

seq1  ATTTACATCCATTTGTTTTGTGGCGTGCACATGTGCAGATGTGTGCACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATCCATTTGTTTTGTGGCGTGCACATGTGCAGATGTGTGCACAC  983

seq1  TAGCGCATGTCCTAGGATACATATGGAAGTCAGAGGACAAGGTGACAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCATGTCCTAGGATACATATGGAAGTCAGAGGACAAGGTGACAGAA  1033

seq1  TCTGTCCTCTCCTCCCACCATACAGGTCCCTGGCTTTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTCCTCCCACCATACAGGTCCCTGGCTTTGAATTC  1076

seq1: chr4_135617191_135617519
seq2: B6Ng01-166E08.g_74_402

seq1  ATGCCTAGTTGTGTCTCCCAGTAAATCCCTAGCTGAAGAAATGAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGTTGTGTCTCCCAGTAAATCCCTAGCTGAAGAAATGAAGAGAG  50

seq1  GATGGGAGGCCTGAAGCCCCAACTTGTCATCTCCATGGTCCCAGCAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGGCCTGAAGCCCCAACTTGTCATCTCCATGGTCCCAGCAGCCA  100

seq1  GTGCTGGGTTTTAGAAGCAGCAGAACATGGGGGTAGGGGGAGGGAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGTTTTAGAAGCAGCAGAACATGGGGGTAGGGGGAGGGAGTAGG  150

seq1  CAGAAGAGGAGCGAGAGTGGCCTGGCTTTCTTTCTGAAGGGTTGCCGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGAGCGAGAGTGGCCTGGCTTTCTTTCTGAAGGGTTGCCGCAG  200

seq1  GACTCAGGTCACAGCCCCTGTCTCGAGTCTAAGGGTGTTTTCTAGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGTCACAGCCCCTGTCTCGAGTCTAAGGGTGTTTTCTAGAAGTT  250

seq1  CAGGAACTGGGCTGTGTGCTTGGAAACAAGCCCAGATCAGGGAAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGGGCTGTGTGCTTGGAAACAAGCCCAGATCAGGGAAAGTTGG  300

seq1  CCGTCGGGGAAAAAGCAGTCCTGAACTAA  329
      ||||||||||||||||| |||||||||||
seq2  CCGTCGGGGAAAAAGCATTCCTGAACTAA  329