BAC Information

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BAC

Clone NameB6Ng01-166F08
Chromosome4 (Build37)
Map Location 75,704,000 - 75,705,123
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F08.bB6Ng01-166F08.g
ACCDH958143DH958144
length1,2041,107
definitionDH958143|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F08, 5' end.DH958144|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttattatagttatgtatggcagactacattagttattagtagaa
aggtccccccccccactatcacttagaataaaagccaagttgctcccata
tacaggaatttacaatggtttaggaagtagatctgtggttttagagtctt
gcattattcatgaggaggttagctagagtggaactccctaattagaacca
tgacttgggcaagaaagaccttgccccaggagtgtaaagacctctcacct
ggcttctaagactccagctgatcttagatagagctgacttggtctcagtt
gttttattgcccagttgctgccagtctttgtttgcattcctctgttttgt
gtaagagtcattaagcatccggtaacctcatttgtaccttgccgatgtgt
cacctaacttccctattttcttctgtataaaaaggttgatgctcattttg
acaaattacattcagattcagcacacttccttatgtcctgtctgtttgtc
accctattttcactgactctgtgcccatctgtcggaaaccctgattccca
tggattgaggggggcctactgagcccggtccgtggcatttaggatttttt
taagaaactttttattgattcttcatgaatgtcatatcacacaccctaat
tccactcatttcccatcccttcagaactgtgttctgcctttgcaaccccc
tccccaaagggaaaaaaaaaagaaagagagagagagaaattaaaaaaata
aaaaacaaaggaaaagcagtagtgtgtcagggctttaaacacttttgttc
acacagccttacttggaaatgctcacagcaatgagtctttgttccaatgt
gaggcctatggcttctgttatactatcaatactgaatcctcaccaggagt
ccatttggatatcttgttgttgccctttgtcatgagttcacaactttgga
ttggcagaatggcccttcacatgtgtagcagtcacagatgagtgatgttg
agtagcatcaagcctggatctgaggtctggtagaagctggtgggcagcca
tacctcagctgtgctttgacccagcaactcttgccttcctggaaggggta
ctggtctcctcatgctaggacagtctgggcactacttggcgtagactgaa
tggcgagctcttctagcctagcagttacgtgcgtgcgctaagcggagcca
tagt
gaattccttcccatttttttctgactctcattccaaatatccactactaa
atttacatcagtgttcaagaagaggtaatcagaaagtgttgacttctaat
tgaaacaaattgtaaccatagccctcatacatctcagtatcaacctgatt
agcatcttgtcatttctacccttattcccttgcccatagaataggcttgt
tttgttttgttttttcccttatcatctctaaccttctctgaagaactaag
tatctattctattcattccaacctggagaaaaagttgaaattattaaaga
caaatcaatactcataatcatgattcattaagttggctgttctatcttgg
ggttagggagaaggatataagtatgcctaattatccattcagatcactgc
caccatgaaattgctcaagctttagaataatagagaagcaatggtcaatg
acagaatctgcttttagttgatggtttgagccttctcataccaatcccta
tcttaccaatgtgcatcatatggaacctgttgtattttctcacctctctt
ctgtataagatacaaaagtaggagaaaggtgaagcccgtgtgttctaagt
cagtcatgaatcctatgtgagacaaactggagttggtgcccttcactgtg
tgtcagttacaggtagtaacctaagagatagaatggattttatgaaaatt
caagttagaccctggtggtagtggcaaacaccttttattcctgcaccgtg
aaagcagaagcaagcagatctctgtagatttatagccagtctgatctaca
gtgcaagttctaggacagccaaggaaaccctgtcttggaaaaataaggtc
caaattagtcttctcattgtatctggatgacactcattcaattgatcaca
tcctacactggaatctggccagaaaacacaacaaaacatcaagaaaacaa
aaacctgctcacaggtccatttctagcccaggtcatgtgacatttctgat
atcaaaatgacagaaatgcgtgaatatttcagtcatgtttattatggata
gtgaggtaataggtagtaatccattgtatgggtaggtaattacatatggt
aaaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75704000_75705123
seq2: B6Ng01-166F08.g_67_1173 (reverse)

seq1  TAATTTTATACATTTATGTAATTAACTTACACATACAATAGGATTACTTA  50
      ||||||||  ||  ||||||||| || ||| |||||||| ||||||| ||
seq2  TAATTTTA-CCA--TATGTAATT-ACCTACCCATACAAT-GGATTAC-TA  44

seq1  CTAATTACCTCACATAT-CATAATAAAACATGACCTGAAAATAATTCACG  99
      |  |||||||||| ||| |||||| |||||||| ||||||   |||||||
seq2  CCTATTACCTCAC-TATCCATAAT-AAACATGA-CTGAAA--TATTCACG  89

seq1  CATTTCTGTTCATTTTGAATATCAGAAATGTCACATGACCTGGGCTAGAA  149
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CATTTCTG-TCATTTTG-ATATCAGAAATGTCACATGACCTGGGCTAGAA  137

seq1  ATGGACCTGTGAGCAGGTTTTTTGTTTTCTTGATGTTTTTGTTGTTGTTT  199
      ||||||||||||||||| ||||||||||||||||| |||||||||   ||
seq2  ATGGACCTGTGAGCAGG-TTTTTGTTTTCTTGATG-TTTTGTTGT--GTT  183

seq1  TTCTGGCCAGATTCCAGTGTAGGATGTGATCAATTGAATGAGTGTCATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCAGATTCCAGTGTAGGATGTGATCAATTGAATGAGTGTCATCC  233

seq1  AGATAACAATGAGAAGACTAATTTGGACCTTATTTTTCCAAGACAGGGTT  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAT-ACAATGAGAAGACTAATTTGGACCTTATTTTTCCAAGACAGGGTT  282

seq1  TCCTTGGCTGTCCTAGAACTTGCACTGTAGATCAGACTGGCTATAAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCTGTCCTAGAACTTGCACTGTAGATCAGACTGGCTATAAATCT  332

seq1  ACAGAGATCTGCTTGCTTCTGCTTTCACGGTGCAGGAATAAAAGGTGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTGCTTGCTTCTGCTTTCACGGTGCAGGAATAAAAGGTGTTT  382

seq1  GCCACTACCACCAGGGTCTAACTTGAATTTTCATAAAATCCATTCTATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACCACCAGGGTCTAACTTGAATTTTCATAAAATCCATTCTATCT  432

seq1  CTTAGGTTACTACCTGTAACTGACACACAGTGAAGGGCACCAACTCCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTACTACCTGTAACTGACACACAGTGAAGGGCACCAACTCCAGT  482

seq1  TTGTCTCACATAGGATTCATGACTGACTTAGAACACACGGGCTTCACCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCACATAGGATTCATGACTGACTTAGAACACACGGGCTTCACCTT  532

seq1  TCTCCTACTTTTGTATCTTATACAGAAGAGAGGTGAGAAAATACAACAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACTTTTGTATCTTATACAGAAGAGAGGTGAGAAAATACAACAGG  582

seq1  TTCCATATGATGCACATTGGTAAGATAGGGATTGGTATGAGAAGGCTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATGATGCACATTGGTAAGATAGGGATTGGTATGAGAAGGCTCAA  632

seq1  ACCATCAACTAAAAGCAGATTCTGTCATTGACCATTGCTTCTCTATTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAACTAAAAGCAGATTCTGTCATTGACCATTGCTTCTCTATTATT  682

seq1  CTAAAGCTTGAGCAATTTCATGGTGGCAGTGATCTGAATGGATAATTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTTGAGCAATTTCATGGTGGCAGTGATCTGAATGGATAATTAGG  732

seq1  CATACTTATATCCTTCTCCCTAACCCCAAGATAGAACAGCCAACTTAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTATATCCTTCTCCCTAACCCCAAGATAGAACAGCCAACTTAATG  782

seq1  AATCATGATTATGAGTATTGATTTGTCTTTAATAATTTCAACTTTTTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGATTATGAGTATTGATTTGTCTTTAATAATTTCAACTTTTTCTC  832

seq1  CAGGTTGGAATGAATAGAATAGATACTTAGTTCTTCAGAGAAGGTTAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGAATGAATAGAATAGATACTTAGTTCTTCAGAGAAGGTTAGAG  882

seq1  ATGATAAGGGAAAAAACAAAACAAAACAAGCCTATTCTATGGGCAAGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGGGAAAAAACAAAACAAAACAAGCCTATTCTATGGGCAAGGGA  932

seq1  ATAAGGGTAGAAATGACAAGATGCTAATCAGGTTGATACTGAGATGTATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTAGAAATGACAAGATGCTAATCAGGTTGATACTGAGATGTATG  982

seq1  AGGGCTATGGTTACAATTTGTTTCAATTAGAAGTCAACACTTTCTGATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATGGTTACAATTTGTTTCAATTAGAAGTCAACACTTTCTGATTA  1032

seq1  CCTCTTCTTGAACACTGATGTAAATTTAGTAGTGGATATTTGGAATGAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTGAACACTGATGTAAATTTAGTAGTGGATATTTGGAATGAGA  1082

seq1  GTCAGAAAAAAATGGGAAGGAATTC  1124
      |||||||||||||||||||||||||
seq2  GTCAGAAAAAAATGGGAAGGAATTC  1107