BAC Information

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BAC

Clone NameB6Ng01-166J23
Chromosome4 (Build37)
Map Location 66,707,937 - 66,843,342
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166J23.bB6Ng01-166J23.g
ACCDH958347DH958348
length8371,071
definitionDH958347|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J23, 5' end.DH958348|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,842,799 - 66,843,342)(66,707,937 - 66,709,014)
sequence
gaattccatgggctctggtgacatctcctgcgttacgtcaggtgaaaatc
agccaggagtaaatcttggtgactagaattttattttccattcagctctc
aaccttgtgtagtgcagccagttcctaacaagtgttagaaatttgatctg
gcaaaggtatatgcttcaaaacagaacacgacatgttggaacagacttgt
atttgtttctgcatcatggacattatactgctgcttattctataggtatg
ttcttgaagctgtgaggctcattcgtgactcaaattaatgtcagtcttat
tggtaaaggggatttctttctgttatccacattgtccatgccagttacat
ttatctcaatctgacataagctagggtcttctgagaagtcaaaccctcag
atgagaaaatgctttcatcagattgccctgaaggtaaatcagtaactctc
tctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgctcgtgcgcacgtgcttctatccagcccaatt
taggcaatgtacctcctgagcaggttactctggcagtatgagaaagagag
ttgagcaaacagtgaagagtgtgccagaaaggcagaatttgtccctgggc
tatgctttaattcttgcctctaggtttgcatttttcactcctcttcaagt
tttaacaatggcatagatccccttttctccctgagatgctttttggtaat
agtttatcatagcaattgaaaaatgagctaggacacagcatagtgtagag
gaaagtattttgtgggttaggggagagtaggatggag
gaattctctggatgcgtgtggtggacaaattcctacacaatattctttaa
cattcacagtacatgccttaactcacaaacaaataagaatataataaaat
taaaaacatataagtcttaatttttgaataagatgtttttatattgataa
agcaaatttactattttattatctggaattgctataaaaacaatcactag
atcaaaagtgctttatatagatgcttattcaacaaatatttaataatatt
ccaggaaattaaggtaacataatgacaaaaatatagataatcagaaaagg
ggtaaataaaaagttaatctaaactgttagggagtctatcaatacattgg
tggaatttttatattaacattttccaatctatagcatcaagtgaagggct
ttattaactcaaaaggtgaatgcaatttaatccaacaagtgtttgtttct
tgttcccgcacacactcattaagtggtggagatttgaggtggaggatctc
caatgtggcatcatttataaaccacatctggggtaggatgtaatcttcag
tcctttgccatgcatggcgtgcatgattagcctaaaggaggcactgggca
acaacaccgaacattagatcatgcctgacatgttgtgggcaggccaagag
aaaccagccttcaatcacatggcctcatttaagcaaaggtaataagggag
atgtaattttgccatgtgcctgaaagggaaatgaaacaagcttggcaaac
tcacagattgcctctatcataagaaccaaatgagataaagtacctggcat
accgcctggcacataatagaccttcaagaaatgctatctatggctagcat
ggggattctaatttgttagaatataatgtgctttgactggataggtattt
atggatgagacattttgttttgtgtcacccatttgactatagatagcatc
accgcactgcacatgcattacctttatgtttatgaagctcttagaaatga
tttcagtttacttttattttgcctatattatgagtaaggtacataaaatt
ccttctttatattgaatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66842799_66843342
seq2: B6Ng01-166J23.b_331_880 (reverse)

seq1  CTCCATCCTACTCTCCCCTAACCCAC-AAATACTTT-CTCTACACTATGC  48
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  CTCCATCCTACTCTCCCCTAACCCACAAAATACTTTCCTCTACACTATGC  50

seq1  TGTGTCCTAGCTCATTTTTCAATTGCTATGATAAACTATTACC-AAAAGC  97
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGTCCTAGCTCATTTTTCAATTGCTATGATAAACTATTACCAAAAAGC  100

seq1  ATCTCAGGGAG-AAAGGGGATCTATGCCATTGTTAAAACTTGAAGAGGAG  146
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGAGAAAAGGGGATCTATGCCATTGTTAAAACTTGAAGAGGAG  150

seq1  TG-AAAATGCAAACCTAGAGGCAAGAATTAAAGCATAGCCCAGGGACAAA  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGCAAACCTAGAGGCAAGAATTAAAGCATAGCCCAGGGACAAA  200

seq1  TTCTGCC-TTCTGGCACACTCTTCACTGTTTGCTCAACTCTCTTTCTCAT  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTTCTGGCACACTCTTCACTGTTTGCTCAACTCTCTTTCTCAT  250

seq1  ACTGCCAGAGTAACCTGCTCAGGAGGTACATTGCCTAAATTGGGCTGGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGAGTAACCTGCTCAGGAGGTACATTGCCTAAATTGGGCTGGAT  300

seq1  AGAAGCACGTGCGCAAGAGCACACACACACACACACACACACACACACAC  344
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAGCACGTGCGCACGAGCACACACACACACACACACACACACACACAC  350

seq1  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTGAT  400

seq1  TTACCTTCAGGGCAATCTGATGAAAGCATTTTCTCATCTGAGGGTTTGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCAGGGCAATCTGATGAAAGCATTTTCTCATCTGAGGGTTTGAC  450

seq1  TTCTCAGAAGACCCTAGCTTATGTCAGATTGAGATAAATGTAACTGGCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAGACCCTAGCTTATGTCAGATTGAGATAAATGTAACTGGCAT  500

seq1  GGACAATGTGGATAACAGAAAGAAATCCCCTTTACCAATAAGACTGACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGTGGATAACAGAAAGAAATCCCCTTTACCAATAAGACTGACAT  550

seq1: chr4_66707937_66709014
seq2: B6Ng01-166J23.g_66_1136

seq1  GAATTCTCTGGATGCGTGTGGTGGACAAATTCCTACACAATATTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATGCGTGTGGTGGACAAATTCCTACACAATATTCTTTAA  50

seq1  CATTCACAGTACATGCCTTAACTCACAAACAAATAAGAATATAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAGTACATGCCTTAACTCACAAACAAATAAGAATATAATAAAAT  100

seq1  TAAAAACATATAAGTCTTAATTTTTGAATAAGATGTTTTTATATTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATATAAGTCTTAATTTTTGAATAAGATGTTTTTATATTGATAA  150

seq1  AGCAAATTTACTATTTTATTATCTGGAATTGCTATAAAAACAATCACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTACTATTTTATTATCTGGAATTGCTATAAAAACAATCACTAG  200

seq1  ATCAAAAGTGCTTTATATAGATGCTTATTCAACAAATATTTAATAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGTGCTTTATATAGATGCTTATTCAACAAATATTTAATAATATT  250

seq1  CCAGGAAATTAAGGTAACATAATGACAAAAATATAGATAATCAGAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATTAAGGTAACATAATGACAAAAATATAGATAATCAGAAAAGG  300

seq1  GGTAAATAAAAAGTTAATCTAAACTGTTAGGGAGTCTATCAATACATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAAAAGTTAATCTAAACTGTTAGGGAGTCTATCAATACATTGG  350

seq1  TGGAATTTTTATATTAACATTTTCCAATCTATAGCATCAAGTGAAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTTATATTAACATTTTCCAATCTATAGCATCAAGTGAAGGGCT  400

seq1  TTATTAACTCAAAAGGTGAATGCAATTTAATCCAACAAGTGTTTGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTCAAAAGGTGAATGCAATTTAATCCAACAAGTGTTTGTTTCT  450

seq1  TGTTCCCGCACACACTCATTAAGTGGTGGAGATTTGAGGTGGAGGATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCGCACACACTCATTAAGTGGTGGAGATTTGAGGTGGAGGATCTC  500

seq1  CAATGTGGCATCATTTATAAACCACATCTGGGGTAGGATGTAATCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGCATCATTTATAAACCACATCTGGGGTAGGATGTAATCTTCAG  550

seq1  TCCTTTGCCATGCATGGCGTGCATGATTAGCCTAAAGGAGGCACTGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCATGCATGGCGTGCATGATTAGCCTAAAGGAGGCACTGGGCA  600

seq1  ACAACACCGAACATTAGATCATGCCTGACATGTTGTGGGCAGGCCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCGAACATTAGATCATGCCTGACATGTTGTGGGCAGGCCAAGAG  650

seq1  AAACCAGCCTTCAATCACATGGCCTCATTTAAGCAAAGGTAATAAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCTTCAATCACATGGCCTCATTTAAGCAAAGGTAATAAGGGAG  700

seq1  ATGTAATTTTGCCATGTGCCTGAAAGGGAAATGAAACAAGCTTGGCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTTGCCATGTGCCTGAAAGGGAAATGAAACAAGCTTGGCAAAC  750

seq1  TCACAGATTGCCTCTATCATAAGAACCAAATGAGATAAAGTACCTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATTGCCTCTATCATAAGAACCAAATGAGATAAAGTACCTGGCAT  800

seq1  ACCGCCTGGCACATAATAGACCTTCAAGAAATGCTATCTATGGCTAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCTGGCACATAATAGACCTTCAAGAAATGCTATCTATGGCTAGCAT  850

seq1  GGGGATTCTAATTTGTTAGAATATAATGTGCTTTGACTGGATAGGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTCTAATTTGTTAGAATATAATGTGCTTTGACTGGATAGGTATTT  900

seq1  ATGGATGAGAACATTTTGTTTTGTGTCAACCCATTTGACTATAAGAATAG  950
      ||||||||| ||||||||||||||||| |||||||||||||||   ||||
seq2  ATGGATGAG-ACATTTTGTTTTGTGTC-ACCCATTTGACTATA--GATAG  946

seq1  CATCACCGCACTGCACATGCATTACCTTTTATTGTTTATGAAGCTCTTAG  1000
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CATCACCGCACTGCACATGCATTACCTTT--ATGTTTATGAAGCTCTTAG  994

seq1  AAATGATTTCAGTTTACTTTTATTTTGCCTATATTATGAGTAAGGTACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTCAGTTTACTTTTATTTTGCCTATATTATGAGTAAGGTACAT  1044

seq1  AATATTCCTTCTTTTAATATGAATGGAA  1078
      || |||||||||||  || |||||||||
seq2  AAAATTCCTTCTTTATAT-TGAATGGAA  1071