BAC Information

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BAC

Clone NameB6Ng01-166K01
Chromosome4 (Build37)
Map Location 154,565,682 - 154,591,581
singlet/doubletdoublet
Overlap geneSki
Upstream geneMegf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1
Downstream gene2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166K01.bB6Ng01-166K01.g
ACCDH958349DH958350
length1,153649
definitionDH958349|Mus musculus domesticus DNA, BAC clone: B6Ng01-166K01, 5' end.DH958350|Mus musculus domesticus DNA, BAC clone: B6Ng01-166K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,565,682 - 154,566,835)(154,590,973 - 154,591,581)
sequence
gaattccagaaaagctagggtaaaaaaatacctaatacctgtctcaaccc
taccccgtcccgccccctcaaaaaatagagagaaaacacagtaaaaaaaa
aaagagaaaaaaaaagaaaaatgccttttagacatgtaaaaataggttag
tcaggaaccacactacaggcaagactgcacttgataatcaacaaaaccta
gaccatcactcatccaagcatagccaggcctacgtagactagaacctcac
aacacccactgaacaggacacaggcagagaccaagagcagtgctctgctc
tgcacatcttcaggactgctgctaccgctgcaggagactgctggacaaga
tactatcttgatctgccctgcagctagaagctcctctaggatcctgaccc
ttgaactaccttctgtgagagactgggcccagccattagctaaagtatgt
cacacagacacagatgagcagcatggagagaggggttttagactgtcaaa
actgtgtgtgatgaccaccaccaccaccaccaccccaccccccgccgcct
tgcataggaaaatatcacttttgttatgtcaactacacgtctctaccttc
ttcttgcaatacacatcctaagagtgagaggcattcactgtagactacag
aagcatggagtgacccagctgcatggccttcaactggggtccaagtagcc
caagggtccctaacagcccaaggtgacagaacctgacttagagcctcaaa
gagccccagcccccaccaccgcagaaggccccagactcaactaggcaatg
gcaccaaactgtgcctctggaaagtcttgcaggctacttaggatgtgtgt
gtgtgcttggagaacaagctcattaacactgtacacagtgttctagaaca
ttctggaagcaggaagaccacaaatcaacccttcacttctgaatgctcta
gtgttccctgacagtcaaccacgagccctgggccccaaaggcagtttaaa
agtagaaccgagtatcagcacctcattagaacatgaccaccctggcacta
gggctgccgctcctaaggctctgctgccttcaaacgccctccaactcacc
ttgtggttcatccgaccctcaggccttgacaattgctaagccacctagcc
ctc
gaattcaggaccagcctgcatagcggggggggggggggatccatcccccc
ccccccaccccccccaagtcggagcctctgtctttgcagccccagaaagg
aggctgcggttgaggggtttgcctgccctgctgtctggcaggaggcgagg
tggccatggctggggctggattctgcaacagtgtctctttctaaggattg
cgaaagttgaggccggtttctccttcagaagaattatgcaagtttcaact
gaaatgttttttaaaagtttctttgttttgaatcaaagctaagttacttc
tgtgagatctagaagagctgatcagtgaggggagcctctcttgccttctc
cctggcgccatggaagagaaaggaagcgtggagctgggtgtcaggtagat
ggcggctgtaggtgctttgcccctggtgctctgtgtggtcagtagccact
gtagccactgatggatcctgtcatgctgacttgtctacactactccatca
agagtgtctcccaccttctcctgtgaccccgtggagttctggtccctttt
cttgatcaaggattgtgctccgacgatctgctgccttttgaggtactttt
ataggtttaacctgggttcacccttttggaagcacccctgtcactaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154565682_154566835
seq2: B6Ng01-166K01.b_44_1196

seq1  GAATTCCAGAAAAGCTAGGGTAAAAAAATACCTAATACCTGTCTCAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAGCTAGGGTAAAAAAATACCTAATACCTGTCTCAACCC  50

seq1  TACCCCGTCCCGCCCCCTCAAAAAATAGAGAGAAAACACAGTAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCGTCCCGCCCCCTCAAAAAATAGAGAGAAAACACAGTAAAAAAAA  100

seq1  AAAGAGAAAAAAAAAGAAAAATGCCTTTTAGACATGTAAAAATAGGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAAAAAAGAAAAATGCCTTTTAGACATGTAAAAATAGGTTAG  150

seq1  TCAGGAACCACACTACAGGCAAGACTGCACTTGATAATCAACAAAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACCACACTACAGGCAAGACTGCACTTGATAATCAACAAAACCTA  200

seq1  GACCATCACTCATCCAAGCATAGCCAGGCCTACGTAGACTAGAACCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCACTCATCCAAGCATAGCCAGGCCTACGTAGACTAGAACCTCAC  250

seq1  AACACCCACTGAACAGGACACAGGCAGAGACCAAGAGCAGTGCTCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCACTGAACAGGACACAGGCAGAGACCAAGAGCAGTGCTCTGCTC  300

seq1  TGCACATCTTCAGGACTGCTGCTACCGCTGCAGGAGACTGCTGGACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTTCAGGACTGCTGCTACCGCTGCAGGAGACTGCTGGACAAGA  350

seq1  TACTATCTTGATCTGCCCTGCAGCTAGAAGCTCCTCTAGGATCCTGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTTGATCTGCCCTGCAGCTAGAAGCTCCTCTAGGATCCTGACCC  400

seq1  TTGAACTACCTTCTGTGAGAGACTGGGCCCAGCCATTAGCTAAAGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTACCTTCTGTGAGAGACTGGGCCCAGCCATTAGCTAAAGTATGT  450

seq1  CACACAGACACAGATGAGCAGCATGGAGAGAGGGGTTTTAGACTGTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACAGATGAGCAGCATGGAGAGAGGGGTTTTAGACTGTCAAA  500

seq1  ACTGTGTGTGATGACCACCACCACCACCACCACCCCACCCCCCGCCGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGTGATGACCACCACCACCACCACCACCCCACCCCCCGCCGCCT  550

seq1  TGCATAGGAAAATATCACTTTTGTTATGTCAACTACACGTCTCTACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGGAAAATATCACTTTTGTTATGTCAACTACACGTCTCTACCTTC  600

seq1  TTCTTGCAATACACATCCTAAGAGTGAGAGGCATTCACTGTAGACTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAATACACATCCTAAGAGTGAGAGGCATTCACTGTAGACTACAG  650

seq1  AAGCATGGAGTGACCCAGCTGCATGGCCTTCAACTGGGGTCCAAGTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGAGTGACCCAGCTGCATGGCCTTCAACTGGGGTCCAAGTAGCC  700

seq1  CAAGGGTCCCTAACAGCCCAAGGTGACAGAACCTGACTTAGAGCCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTCCCTAACAGCCCAAGGTGACAGAACCTGACTTAGAGCCTCAAA  750

seq1  GAGCCCCAGCCCCCACCACCGCAGAAGGCCCCAGACTCAACTAGGCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGCCCCCACCACCGCAGAAGGCCCCAGACTCAACTAGGCAATG  800

seq1  GCACCAAACTGTGCCTCTGGAAGGTCTTGCAGGCTACTTAGGATGTGTGT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCACCAAACTGTGCCTCTGGAAAGTCTTGCAGGCTACTTAGGATGTGTGT  850

seq1  GTGTGCTTGGAGAACAAGCTCATTAACACTGTACACAGTGTTCTAGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTGGAGAACAAGCTCATTAACACTGTACACAGTGTTCTAGAACA  900

seq1  TTCTGGAAGCAGGAAGACCACAAATCAACCCTTCACTTCTGAATGCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGCAGGAAGACCACAAATCAACCCTTCACTTCTGAATGCTCTA  950

seq1  GTGTTCCCTGACAGTCAACCACGAGCCCTGGGCCCCAAAGGCAGTTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTGACAGTCAACCACGAGCCCTGGGCCCCAAAGGCAGTTTAAA  1000

seq1  AGTAGAACCGAGTAATCAGCACCTCATTAGAACATGACCACCCTGGCACT  1050
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACCGAGT-ATCAGCACCTCATTAGAACATGACCACCCTGGCACT  1049

seq1  AGGGCTGCCGCTCCTAAAGCTCTTGCTGCCTCCAAACGCCTCACAACTCA  1100
      ||||||||||||||||| |||| |||||||| ||||||||   |||||||
seq2  AGGGCTGCCGCTCCTAAGGCTC-TGCTGCCTTCAAACGCCCTCCAACTCA  1098

seq1  CC-TGT-GTTCATCACGACCCTCAGGCCTTGACAAATCCTAAAGCCACCT  1148
      || ||| ||||||| |||||||||||||||||||| | || |||||||||
seq2  CCTTGTGGTTCATC-CGACCCTCAGGCCTTGACAATTGCT-AAGCCACCT  1146

seq1  A-CCCTC  1154
      | |||||
seq2  AGCCCTC  1153

seq1: chr4_154590973_154591581
seq2: B6Ng01-166K01.g_104_713 (reverse)

seq1  CCCTGGTGACAGGGGTGCTTCC-AGAGGGTG-ACCCAGGAT-AACCTCTC  47
      |||| ||||||||||||||||| | |||||| ||||||| | ||||| | 
seq2  CCCTAGTGACAGGGGTGCTTCCAAAAGGGTGAACCCAGGTTAAACCTATA  50

seq1  AAAGTACCTCAAAAGGCAGCAAGATCGTCGGAGCACAATCCTTGATCTAG  97
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AAAGTACCTCAAAAGGCAGC-AGATCGTCGGAGCACAATCCTTGATCAAG  99

seq1  AAAAGGGACCAGAACTCCACGGGGTCACAGGAGAAGGTGGGAGACACTCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGACCAGAACTCCACGGGGTCACAGGAGAAGGTGGGAGACACTCT  149

seq1  TGATGGAGTAGTGTAGACAAGTCAGCATGACAGGATCCATCAGTGGCTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGTAGTGTAGACAAGTCAGCATGACAGGATCCATCAGTGGCTAC  199

seq1  AGTGGCTACTGACCACACAGAGCACCAGGGGCAAAGCACCTCTCAGCCGC  247
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AGTGGCTACTGACCACACAGAGCACCAGGGGCAAAGCACCT-ACAGCCGC  248

seq1  CATCTACCTGACACCCAGCTCCACGCTTCCTTTCTCTTCCCTGGCGCCAG  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCTACCTGACACCCAGCTCCACGCTTCCTTTCTCTTCCATGGCGCCAG  298

seq1  GGAGAAGGCAAGAGAGGCTCCCCTCACTGCTCAGCTCTTCTAGATCTCAC  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGAAGGCAAGAGAGGCTCCCCTCACTGATCAGCTCTTCTAGATCTCAC  348

seq1  AGAAGTAACTTAGCTTTGATTCAAAACAAAGAAACTTTTAAAAAACATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAACTTAGCTTTGATTCAAAACAAAGAAACTTTTAAAAAACATTT  398

seq1  CAGTTGAAACTTGCATAATTCTTCTGAAGGAGAAACCTTGCCTCAACTTT  447
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CAGTTGAAACTTGCATAATTCTTCTGAAGGAGAAACC-GGCCTCAACTTT  447

seq1  CGCAATCCTTAGAAAGAGACACTGTTGCAGAATCCAGCCCCAGCCATGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATCCTTAGAAAGAGACACTGTTGCAGAATCCAGCCCCAGCCATGGC  497

seq1  CACCTCGCCTCCTGCCAGACAGCAGGGCAGGCAAACCCCTCAACCGCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCGCCTCCTGCCAGACAGCAGGGCAGGCAAACCCCTCAACCGCAGC  547

seq1  CTCCTTTCTGGGGCTGCAAAGACAGAGGCTCCGACCTGGGGGGGGT-GGG  596
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  CTCCTTTCTGGGGCTGCAAAGACAGAGGCTCCGACTTGGGGGGGGTGGGG  597

seq1  GGGGGGGGATGGA  609
      |||||||||||||
seq2  GGGGGGGGATGGA  610