BAC Information

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BAC

Clone NameB6Ng01-167C23
Chromosome4 (Build37)5 (Build37)
Map Location 44,965,282 - 44,965,797142,987,658 - 142,988,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGlipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e
Downstream geneGrhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167C23.bB6Ng01-167C23.g
ACCDH958749DH958750
length1,0121,154
definitionDH958749|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C23, 5' end.DH958750|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,965,282 - 44,965,797)(142,987,658 - 142,988,813)
sequence
gaattctttaagaatttcatgcaaagcattttgatcatattcaacctcac
caccacccagatccactcttcttccctacccacccaactttatgtctttt
tttttttcagtctttcttttttaaacccaccaattccattttgtgttgcc
tatatagttttggatatggtcttccactggaagacctatcggagatcata
catacccttgaaggaaattgattccccgttcccagcagctaccagttaac
aacagcttagctaggtgtgaggcttcatgcccatctctcttatacataca
tcttgcctggcttagcttgcacaggtctggtatattccactgtgagttca
tgtgtgtagctgccctgctagtccagaaaacaccatttccttgacagtat
ccagtgcctctggctcttatagtctttcagactcttctacagtggtcctt
gatcactgggaggaggggtgtggtatctgtggctcacttttggctagttg
tgggcctctgtgtcaataaccatcttctgcaaatagaagcttttctgatg
agagctgagagatgcatttctctatggatgtaacaataaggggtcactta
aatactatgtctattcagcagactagtggtggtagggcctcccctaaggt
ctgtgtcccacctgcccacaggttctcggccttgacaatggttctggata
tgggtttcattttgtggaccaggccttaaatccaattactattattggca
caaggaaagactttctgaacaggaccccagtaacttaggcattaagacta
acaattaataaacggaatctcagagactaacaaacttctttaccacaagg
acatcatcatttgagtgaagaggaagccttcagaactggtaaacaacgtt
tagaagctatacacctggcagagggttactatcagaatatacaaagactg
agaaaaatatcagaaatacccaatttaaaatgggcatgagatccaagtgc
tgtgcatgggtt
gaattcttagaaacagagcagtggtcacagcaccaatacatgaacgtcat
cacctatatatcaactcaagtccacccctgaccaatgacctcccatgtgg
cctctggactgaaggccagcagaggccagcaggctagcacctctcgtaag
tcaatcctgaagctgtggaggacacagtccagcatcatggctggacatac
cctgcagctgctgaggggctcagacctgatgtcacatgacctaggaggag
ctcggggagttggcagtcaaatgggcatatgtctgagggtcatacgcagc
tgtcttggtcaaaaacaaggtcacttcaggtgccccctatactcaaccag
ggactttgccaatgtgaggggaaccttagatgaagccccatttcccacat
ccactttagacaagtcagctggcaagaggtggctcaaagcctttcagaac
atggcagttttagatggaaaactattcactgcatgtaaagatgtcaggcc
ttgccatgtgagagtgaggatggaaaaggacagccccctcttcccttccc
ctgctgcagggatggtcccagccaaggctctcgtctcctggaggaacatc
gcacctcccactctgctgtggctgggtcccttgcaatcagaagctctgac
tcagaagatctcagcaacacccgtgtatcagccactgccatgtctgacca
aagacagctgtccccaagcctgacaatctgagtgtgatccccaggaacca
tgaagtggaatgggagaagccattcccacatgttgtcctttgacctcgac
atgtatgccaaggtatgtgcatgagtgggaacacacacaaacacacacaa
acagagaacaaacaaacaaagaaatgtaaagactatttttcagctggcta
tggtagctgaaatcccagcactcagaggcagagggcaagcagatctctgt
gggttcaaggttagcctggtctacagagtgttcaggccaggcatgaccac
atgaaactcttagctcacacaaagaaaagcccactccctcaagttcatgc
ttcagggtctggtgctgtcacgaaacttcaccgttcagctgacagaaacc
gaagttcttgggtggttccttcagggcactcagaagaaccccgacctggc
tttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44965282_44965797
seq2: B6Ng01-167C23.b_50_566 (reverse)

seq1  TATTGACTGTTGTTGGATGCTGTGGAAGGGAGATTCAGTTTTCTTCAATA  50
      |||||||                   |  |||   ||    |   ||| |
seq2  TATTGAC-------------------ACAGAGGCCCACAACTAGCCAAAA  31

seq1  GTGTGGCCCCTGGTA-------GATCGAACAAGTGGATGACGGCACAC--  91
      |||  ||| | | ||         ||   | ||| ||| | ||  |||  
seq2  GTG-AGCCACAGATACCACACCCCTCCTCCCAGT-GATCAAGGACCACTG  79

seq1  -----------CAACGACTATATGGACTGCACAAATGGAATCTATAAGGT  130
                  || ||||||| |  |    || | | | |  |||  ||
seq2  TAGAAGAGTCTGAAAGACTATAAGAGC----CAGAGGCACTGGATACTGT  125

seq1  TAAGGAAGAGAGGGAGTTAGGGGAGGAGGAAGATGAGGAAGAGGAGGAGG  180
       ||||||   | || |||               |  |||  || |||   
seq2  CAAGGAA---ATGGTGTT--------------TTCTGGACTAGCAGGGCA  158

seq1  GGGAAGAAGAGGAA-----AGGGGA----AGCAGGAGGGGGCAAG--AAG  219
      |  |   | | |||     || |||    | |||    | |||||  |||
seq2  GCTACACACATGAACTCACAGTGGAATATACCAGACCTGTGCAAGCTAAG  208

seq1  GAAGAGGAG-GGGAAGAAGGGGAG-GAGGGGCAGGAAG------------  255
        ||   ||  | | | |   ||| || ||||| ||||            
seq2  CCAGGCAAGATGTATGTATAAGAGAGATGGGCATGAAGCCTCACACCTAG  258

seq1  ---AG--------AA---GGAGGAGGAGGAACAGGAGAAGGAA-------  284
         ||        ||   | ||  |  || |  || |||  ||       
seq2  CTAAGCTGTTGTTAACTGGTAGCTGCTGGGAACGGGGAATCAATTTCCTT  308

seq1  -GAGGAGGAGGAAGAGGAGGAGGAGG-----AGGAGGAAGAAGAGGAGGA  328
        |||    | | ||        |||       | ||||||  |     |
seq2  CAAGGGTATGTATGATCTCCGATAGGTCTTCCAGTGGAAGACCATATCCA  358

seq1  GGAGGA-AGAGGAGGAGGAAGGAGGAGGAGGAGG------AAGAGGAGGA  371
        |  | | |||      ||   |||   || ||      || || | ||
seq2  AAACTATATAGGCAACACAAAATGGAATTGGTGGGTTTAAAAAAGAAAGA  408

seq1  GGAAGAAGAAGAAAGAAATGGTGAACTTGGGAGGGGTACAGAGGCCCACA  421
         | || || ||||| |   | || |||||  |||||  || |     |
seq2  CTGAAAAAAAAAAAGACA---TAAAGTTGGG-TGGGTAGGGAAG----AA  450

seq1  GA-TGGATCTGGGAGGAGTTAGAGGGGAGGAACAGGATGATATGATGTGT  470
      || |||||||||| || |                            ||| 
seq2  GAGTGGATCTGGGTGGTG----------------------------GTG-  471

seq1  ATGATAAATATGATCAAAACCCATTGTATGAAATTCTTAAAGAATT  516
      | | | |||||||||||||  | ||| |||||||||||||||||||
seq2  AGGTTGAATATGATCAAAATGCTTTGCATGAAATTCTTAAAGAATT  517

seq1: chr5_142987658_142988813
seq2: B6Ng01-167C23.g_65_1218

seq1  GAATTCTTAGAAACAGAGCAGTGGTCACAGCACCAATACATGAACGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAACAGAGCAGTGGTCACAGCACCAATACATGAACGTCAT  50

seq1  CACCTATATATCAACTCAAGTCCACCCCTGACCAATGACCTCCCATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATATATCAACTCAAGTCCACCCCTGACCAATGACCTCCCATGTGG  100

seq1  CCTCTGGACTGAAGGCCAGCAGAGGCCAGCAGGCTAGCACCTCTCGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGACTGAAGGCCAGCAGAGGCCAGCAGGCTAGCACCTCTCGTAAG  150

seq1  TCAATCCTGAAGCTGTGGAGGACACAGTCCAGCATCATGGCTGGACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTGAAGCTGTGGAGGACACAGTCCAGCATCATGGCTGGACATAC  200

seq1  CCTGCAGCTGCTGAGGGGCTCAGACCTGATGTCACATGACCTAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCTGCTGAGGGGCTCAGACCTGATGTCACATGACCTAGGAGGAG  250

seq1  CTCGGGGAGTTGGCAGTCAAATGGGCATATGTCTGAGGGTCATACGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGAGTTGGCAGTCAAATGGGCATATGTCTGAGGGTCATACGCAGC  300

seq1  TGTCTTGGTCAAAAACAAGGTCACTTCAGGTGCCCCCTATACTCAACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGTCAAAAACAAGGTCACTTCAGGTGCCCCCTATACTCAACCAG  350

seq1  GGACTTTGCCAATGTGAGGGGAACCTTAGATGAAGCCCCATTTCCCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGCCAATGTGAGGGGAACCTTAGATGAAGCCCCATTTCCCACAT  400

seq1  CCACTTTAGACAAGTCAGCTGGCAAGAGGTGGCTCAAAGCCTTTCAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTAGACAAGTCAGCTGGCAAGAGGTGGCTCAAAGCCTTTCAGAAC  450

seq1  ATGGCAGTTTTAGATGGAAAACTATTCACTGCATGTAAAGATGTCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTTTAGATGGAAAACTATTCACTGCATGTAAAGATGTCAGGCC  500

seq1  TTGCCATGTGAGAGTGAGGATGGAAAAGGACAGCCCCCTCTTCCCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGTGAGAGTGAGGATGGAAAAGGACAGCCCCCTCTTCCCTTCCC  550

seq1  CTGCTGCAGGGATGGTCCCAGCCAAGGCTCTCGTCTCCTGGAGGAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAGGGATGGTCCCAGCCAAGGCTCTCGTCTCCTGGAGGAACATC  600

seq1  GCACCTCCCACTCTGCTGTGGCTGGGTCCCTTGCAATCAGAAGCTCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCCACTCTGCTGTGGCTGGGTCCCTTGCAATCAGAAGCTCTGAC  650

seq1  TCAGAAGATCTCAGCAACACCCGTGTATCAGCCACTGCCATGTCTGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATCTCAGCAACACCCGTGTATCAGCCACTGCCATGTCTGACCA  700

seq1  AAGACAGCTGTCCCCAAGCCTGACAATCTGAGTGTGATCCCCAGGAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTGTCCCCAAGCCTGACAATCTGAGTGTGATCCCCAGGAACCA  750

seq1  TGAAGTGGAATGGGAGAAGCCATTCCCACATGTTGTCCTTTGACCTCGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAATGGGAGAAGCCATTCCCACATGTTGTCCTTTGACCTCGAC  800

seq1  ATGTATGCCAAGGTATGTGCATGAGTGGGAACACACACAAACACACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCCAAGGTATGTGCATGAGTGGGAACACACACAAACACACACAA  850

seq1  ACAGAGAACAAACAAACAAAGAAATGTAAAGACTATTTTTCAGCTGGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACAAACAAACAAAGAAATGTAAAGACTATTTTTCAGCTGGCTA  900

seq1  TGGTAGCTGAAATCCCAGCACTCAGGAGGCAGAGGGCAAGCAGATCTCTG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGTAGCTGAAATCCCAGCACTCA-GAGGCAGAGGGCAAGCAGATCTCTG  949

seq1  TGGGTTCAAGGTTAGCCTGGTCTACAGAGTGTTCCAGGCCAGGCATGACC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGTTCAAGGTTAGCCTGGTCTACAGAGTGTT-CAGGCCAGGCATGACC  998

seq1  ACATGAGACTCTTAGCTCACACAAAGAAAAGCCCACTCCCTCAAGTTCAT  1050
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACTCTTAGCTCACACAAAGAAAAGCCCACTCCCTCAAGTTCAT  1048

seq1  GC-TCAGGGTCCTGTGCTGTCCACAGACACTTCCACCGTCCAGCTGACAG  1099
      || ||||||||  ||||||| ||| || |||| |||||| ||||||||||
seq2  GCTTCAGGGTCTGGTGCTGT-CAC-GAAACTT-CACCGTTCAGCTGACAG  1095

seq1  ACACTCGAGTTCTTGGTGTGTCCCTTCAGGGCACTCAGA--GACCCCGAC  1147
      | ||   |||||||||   || |||||||||||||||||   ||||||||
seq2  AAACCGAAGTTCTTGGGTGGTTCCTTCAGGGCACTCAGAAGAACCCCGAC  1145

seq1  CTGGCTTTG  1156
      |||||||||
seq2  CTGGCTTTG  1154