BAC Information

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BAC

Clone NameB6Ng01-167F17
Chromosome4 (Build37)8 (Build37)
Map Location 79,220,959 - 79,221,740102,823,026 - 102,824,199
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167F17.bB6Ng01-167F17.g
ACCDH958878DH958879
length1,1171,160
definitionDH958878|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F17, 5' end.DH958879|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,220,959 - 79,221,740)(102,823,026 - 102,824,199)
sequence
gaattccttggtccacttagatttgaccttagtacaaggagataggaatg
gatcaattcccattcttctacctgataaacaccagttgtgctagcaccat
ttgttgaaaatgcttttttccactgaatggttttagctcccttgtcaaag
atcaagtgaccataggtgtgtgggtttctttctgggtcttcaattatatt
ccattggtctacttctctgttgctataccagttccatgcagtttttatca
caattgctctgtggtacagctttaagtcagacatcctgattccaccagag
gttcttttatcattgagaagagtatttgctatcctaggatttttgttttt
tgttttttgtttttgtttttttgttgttttgtttttttttgttttgttta
tttattccagatgaatttgcaaattgccctttctaattcattaaagaatt
gagttggaattttgatggggattgcattgaatctctagattgcttttggc
aagatagccatttttactatattgatcctgccaattcatgatcatgggag
ttctttacatcttctgagatcttctttaatttctttcttcagagacttga
agttcttatcattcagatctttcacttccttagttagagtcaagtcaagg
tattttgtattatttgtgactattgagaagagtgttgtttccctaatttc
tctctcagcctgtttatcctttgtgtacagaaaggccattgacttgtttg
agttaattttatatccagctacttcactgaagctgtttatcacgtttagg
agttctctggtggaatttttagggtcacttatatatactatcatatcatc
ctcaacaagtgaaattttgacttcttcctttccaatttgtatacacttgg
tctccttttgttgttgattgctctggctaggacttcaagtacatgttgat
aggtagggagaaagtgggcagcctagactagtcgctgatttagtgggatg
tttccagcttctcatattacttgatgtggctactgatttgctgtagatgc
ttatcatgttagtatgggcctcgaattcctgatctttccaggcctttatc
atgaaatggggttggat
gaattccaggttttccagtgcctgtccttatttggaccaatgtattgaat
caatctctctgtttttctgtctgtcagattctgtctatctatgtctcatt
ttgtctgtctcacactctcatatatatacatacgtatgtatatatacaag
atatgtaatataatgaaatctcgattacagatttgaatctcaccacactt
aagtgattctataatacttctcattctgtactgtagtaaactatatcata
gatatcataaattttatttatacttaataaataatataccatcatataca
tataaactgtattataagaaaagttatatactatatacaatatagtaaat
taagttatatactatatacaatataggtaattctactcactttcttctaa
gcttatttcaggcatctgcattcctctacttacctcccattatataaata
tcttgaactacatatattgtttctcaaaaacctcacgaatgtaattgcct
taattgatctgaccttgaattgctcttgttcgagtaccttaaatgtttat
tgctagggaaagagtaatatatcatttcacagactactagaatgaaacaa
tgtctttatgagctatggagtatagctgctatattaaagttcttcctatg
tgagccattactagtttgcttcaacctaattgttgtttcagtgtcttcta
tctactcagtttctgaactaataaatacttctgcccctgtgcaaagtccc
tcctcatcctctctagtcccgacaatctctctggaggcttccagcacaat
cttgacagtcagagagaggctgctgcagtgtcaagatctaagttcctgtt
tctctggaggccagggtcaatcacctgttcaagcagggtcagctccctcc
agcccatgtggaaaggaaatatcaagaaatacaaatggggagatggatct
taattttgattagattagatagagggtgaattcaactgtcactctattta
ttctgcaaacacatgatgaaaccgcttggaagcctgtgactgcgagactg
attgaataacaatttcagtactgagagagattggactgttgagtccagtc
ttaattactttccttgagctagttcagcccccctctgaagtcatcctttc
cacacttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79220959_79221740
seq2: B6Ng01-167F17.b_341_1163 (reverse)

seq1  ATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGG  50
      ||||||| ||  |||||||| ||||  ||||||||||||||||||| |||
seq2  ATCCAACCCCATTTCATGAT-AAAGGCCTGGAAAGATCAGGAATTCGAGG  49

seq1  CCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACA  100
      |||||||   ||||||||  |||| |||||||||||| |||||||| |||
seq2  CCCATAC--TAACATGAT--AAGC-ATCTACAGCAAATCAGTAGCC-ACA  93

seq1  TCAAAGTAA-ATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC  149
      || |||||| ||   |||||||||||| | |||||||| ||||||| |||
seq2  TC-AAGTAATAT---GAGAAGCTGGAAAC-ATCCCACT-AAATCAGCGAC  137

seq1  TAGATAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG  199
      |||   ||||||||||||||||||||||| | ||||||| ||||||||||
seq2  TAGTCTAGGCTGCCCACTTTCTCCCTACC-TATCAACAT-GTACTTGAAG  185

seq1  TATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATT  249
      |  |||||||||||| || |||||||||||||| |||| | |||||||||
seq2  TCCTAGCCAGAGCAA-TCAACAACAAAAGGAGACCAAGTGTATACAAATT  234

seq1  GGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA  299
      |||||||| ||||||||||| |||||| |||  |||||||||||||||||
seq2  GGAAAGGAAGAAGTCAAAATTTCACTTGTTGAGGATGATATGATAGTATA  284

seq1  TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACGTGATAAACA  334

seq1  GCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCC  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCC  384

seq1  TTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC  449
      ||||| ||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TTTCTGTACACAAAGGATAAACAGGCTGAGAGAGAAATTAGGGAAACAAC  434

seq1  ACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGTGTGACTCTAA  499
      || ||||||||||||||||||||||| |||||| || |   |||||||||
seq2  ACTCTTCTCAATAGTCACAAATAATACAAAATACCTTGACTTGACTCTAA  484

seq1  CTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAA  549
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  CTAAGGAAGTGAAAGATCTGAATGATAAGAACTTCAAGTCTCTGAAGAAA  534

seq1  GAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGAT  599
      |||||||||||||||||||||||||| ||||| |||||||| ||||| ||
seq2  GAAATTAAAGAAGATCTCAGAAGATGTAAAGAACTCCCATGATCATGAAT  584

seq1  TGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  649
      |||||||||||| || |||||||||||||||||||||||||||||||| |
seq2  TGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTAGA  634

seq1  GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTA  699
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTTAATGAATTA  684

seq1  GAAGGAGCAATTTGCAAATTCATCTGGAAT--------------------  729
      ||| | ||||||||||||||||||||||||                    
seq2  GAAAGGGCAATTTGCAAATTCATCTGGAATAAATAAACAAAACAAAAAAA  734

seq1  --------AACAAAAAAA----------------------------CTAG  743
              ||||||||||                            ||||
seq2  AACAAAACAACAAAAAAACAAAAACAAAAAACAAAAAACAAAAATCCTAG  784

seq1  GATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGG  782
      ||||||||| ||||||||||| |||||||||||||||||
seq2  GATAGCAAATACTCTTCTCAATGATAAAAGAACCTCTGG  823

seq1: chr8_102823026_102824199
seq2: B6Ng01-167F17.g_66_1225 (reverse)

seq1  TAGAAGTGGGAAAGGGATGACTATTCCAGAGAGGGGCTGGAACTAGCCTA  50
      |||||||| | || |||||||   | ||||| |||||| ||||||||  |
seq2  TAGAAGTGTGGAAAGGATGAC---TTCAGAGGGGGGCT-GAACTAGCTCA  46

seq1  AGAGAAAGTAATTAAGGACTGGACTCCAACAGTCCAATCTCTCTACAGTA  100
      || |||||||||||| ||||||||| |||||||||||||||||| |||||
seq2  AG-GAAAGTAATTAA-GACTGGACT-CAACAGTCCAATCTCTCT-CAGTA  92

seq1  CTGAAATTG-TAATCAATCAGTCTCTGCAGTCACAGGCTTTCCAAGCGTT  149
      ||||||||| || |||||||||||| |||||||||||| ||||||||| |
seq2  CTGAAATTGTTATTCAATCAGTCTC-GCAGTCACAGGC-TTCCAAGCGGT  140

seq1  TTCATTCATGTTGTTTGCAGAATTAAATAGAGTGGACAGTTGAATTCACC  199
      |||| ||||| ||||||||||| |||||||||| ||||||||||||||||
seq2  TTCA-TCATG-TGTTTGCAGAA-TAAATAGAGT-GACAGTTGAATTCACC  186

seq1  CTCTATTCTAATCTAATCAAAATTAAGATCCATCTCCCCATTTGTATTTC  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTA-TCTAATCTAATCAAAATTAAGATCCATCTCCCCATTTGTATTTC  235

seq1  TTGATATTTCCTTTCCACATGGGCTGGAGGGAGCTGACCCTGCTTGAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTCCTTTCCACATGGGCTGGAGGGAGCTGACCCTGCTTGAACA  285

seq1  GGTGATTGACCCTGGCCTCCAGAGAAACAGGAACTTAGATCTTGACACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTGACCCTGGCCTCCAGAGAAACAGGAACTTAGATCTTGACACTG  335

seq1  CAGCAGCCTCTCTCTGACTGTCAAGATTGTGCTGGAAGCCTCCAGAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTCTCTCTGACTGTCAAGATTGTGCTGGAAGCCTCCAGAGAGA  385

seq1  TTGTCGGGACTAGAGAGGATGAGGAGGGACTTTGCACAGGGGCAGAAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGGACTAGAGAGGATGAGGAGGGACTTTGCACAGGGGCAGAAGTA  435

seq1  TTTATTAGTTCAGAAACTGAGTAGATAGAAGACACTGAAACAACAATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTTCAGAAACTGAGTAGATAGAAGACACTGAAACAACAATTAG  485

seq1  GTTGAAGCAAACTAGTAATGGCTCACATAGGAAGAACTTTAATATAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCAAACTAGTAATGGCTCACATAGGAAGAACTTTAATATAGCAG  535

seq1  CTATACTCCATAGCTCATAAAGACATTGTTTCATTCTAGTAGTCTGTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCCATAGCTCATAAAGACATTGTTTCATTCTAGTAGTCTGTGAA  585

seq1  ATGATATATTACTCTTTCCCTAGCAATAAACATTTAAGGTACTCGAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATTACTCTTTCCCTAGCAATAAACATTTAAGGTACTCGAACAA  635

seq1  GAGCAATTCAAGGTCAGATCAATTAAGGCAATTACATTCGTGAGGTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTCAAGGTCAGATCAATTAAGGCAATTACATTCGTGAGGTTTTT  685

seq1  GAGAAACAATATATGTAGTTCAAGATATTTATATAATGGGAGGTAAGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAATATATGTAGTTCAAGATATTTATATAATGGGAGGTAAGTAG  735

seq1  AGGAATGCAGATGCCTGAAATAAGCTTAGAAGAAAGTGAGTAGAATTACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCAGATGCCTGAAATAAGCTTAGAAGAAAGTGAGTAGAATTACC  785

seq1  TATATTGTATATAGTATATAACTTAATTTACTATATTGTATATAGTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATATAGTATATAACTTAATTTACTATATTGTATATAGTATAT  835

seq1  AACTTTTCTTATAATACAGTTTATATGTATATGATGGTATATTATTTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTTATAATACAGTTTATATGTATATGATGGTATATTATTTATT  885

seq1  AAGTATAAATAAAATTTATGATATCTATGATATAGTTTACTACAGTACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATAAAATTTATGATATCTATGATATAGTTTACTACAGTACAG  935

seq1  AATGAGAAGTATTATAGAATCACTTAAGTGTGGTGAGATTCAAATCTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAGTATTATAGAATCACTTAAGTGTGGTGAGATTCAAATCTGTA  985

seq1  ATCGAGATTTCATTATATTACATATCTTGTATATATACATACGTATGTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGATTTCATTATATTACATATCTTGTATATATACATACGTATGTAT  1035

seq1  ATATATGAGAGTGTGAGACAGACAAAATGAGACATAGATAGACAGAATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGAGTGTGAGACAGACAAAATGAGACATAGATAGACAGAATCT  1085

seq1  GACAGACAGAAAAACAGAGAGATTGATTCAATACATTGGTCCAAATAAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGAAAAACAGAGAGATTGATTCAATACATTGGTCCAAATAAGG  1135

seq1  ACAGGCACTGGAAAACCTGGAATTC  1174
      |||||||||||||||||||||||||
seq2  ACAGGCACTGGAAAACCTGGAATTC  1160