BAC Information

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BAC

Clone NameB6Ng01-167H08
Chromosome4 (Build37)
Map Location 76,116,662 - 76,258,362
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167H08.bB6Ng01-167H08.g
ACCDH958950DH958951
length1,218970
definitionDH958950|Mus musculus domesticus DNA, BAC clone: B6Ng01-167H08, 5' end.DH958951|Mus musculus domesticus DNA, BAC clone: B6Ng01-167H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,116,662 - 76,117,884)(76,257,384 - 76,258,362)
sequence
gaattcctgattttaatttggcatgagaaatttccagacttaaatgaaat
cacaaacaatgaaccttgatggcacttcttaagtcagaatgtgaggtttg
ttttgatttgcttgttttgttcagtttgagttactttgaagccatggcta
gaatggaactcactgtgtcctgtgactccttttgcctaccaaatgctaga
attactgatgcaccaccacagcacagttaagtcagaattttcagggtaaa
cattttcgaccttttcctataacattgcttatagtgtagacatatcccgt
gtttctcactcatacctttgaagatgcttactatcaatcccaccagaaat
gcctctggtgatgtttgctgtaaactaatagagtaaccatgctgttactc
actgaaaaaccatattaaggtcactggattgtctcagacaagatgttaga
ttctctcaaattggtttttctgagtgaggcttcaattctagatctccttt
atagccatttggtatcatttattgaaattgccagcacttgcatttgcctt
ttctcttctaagaagcagacaatctagtacaatgtgacatcctctagctg
tcaccaaatgtaacctagcaaaattgttacagctcagagctgttactgtc
taatctgaaggccaggattataagtaatatcatcacctgaaggtaagtaa
gtgagcaaatatctcaggtccactatacttctttgcctctgacaaccaag
gttgttgctctcagtccaaataactaccaagcagtgattgttcccttatg
tagccactcactaaccacaaaccaaaataagagactaaaaatattttaac
aatttcatttcattagcctacattatgccttttaatgtcctctgagataa
gtagcaggaactgataacacacggtgctcctttatttgagtaataggtac
aactcttcaccccttctcttctttactcattcattccatgtattcattaa
acactgactctagacacgcactaggggatgcagtgaaaagaaataaaaac
attgtcttctgctttgaagaagcacgatactattgtagatcatttctgac
agagccttataattaaacttgttttgtataattttaattaaaaattaaat
agagttatttggtcttaagaggttcctcatgagtatttgtaggcatgatc
ggaactttaatgttaatg
gaattccatctttatctccaaagacatcaggtagcatttaggccatgaat
catggcactctacttaggaggtggagagaaaacaaatatttaaagtacac
acacacacacacacacacacacacacacacacatttatatcaggccagaa
ttcctcttcacaacattagtacagaaaaaccttgctccagtttttaataa
gcagtaacgcaatcaattttgctaagagctttcacacaaacaggaagaaa
tctaagctttccaaaacgaaacaaaaacaaaaaacaaaaacataaacaaa
caaacaaacaaaaaaaaaaaaaacagggaaatacatcttacaagaatttg
tcctggaataggaaaacttggaaaggtcaatgtggtcataattgctggtt
gacttctttcacacatcatggttgtgaatgatatgtgacaggaaggagtt
tactctttggagtaaggaacctgaataaaaataatgaatgagggcagggc
tactcggaggtatggtagaggagaaggtttagtgtagatatgagggaaag
cacagccagaggcatctgacagagcccagactgaatgaggtcataaaaaa
gtttgtgcaaatattaagagaggaaaagaaaagaagagaaggggaacaaa
gagagttctcaggaatgcagagaccaagaggccaaaaggccaaaaggact
ggcttccaaaatggctgagattttatagcagtcagagaagctggggggaa
agaaggtaagctggttagtttagggtatggggtaggatatatcagccagg
aagactaatagggcctgaggaataggtcctcagccagaatcctcttgata
tgtaaataggcacctctgagacctaacagaacccactgaagttaggctga
tatgttccaggaaacctgggaatatacagatctcttcaaggcatcaacat
gattcagatgttttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76116662_76117884
seq2: B6Ng01-167H08.b_43_1260

seq1  GAATTCCTGATTTTAATTTGGCATGAGAAATTTCCAGACTTAAATGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTTTAATTTGGCATGAGAAATTTCCAGACTTAAATGAAAT  50

seq1  CACAAACAATGAACCTTGATGGCACTTCTTAAGTCAGAATGTGAGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAATGAACCTTGATGGCACTTCTTAAGTCAGAATGTGAGGTTTG  100

seq1  TTTTGATTTGCTTGTTTTGTTCAGTTTGAGTTACTTTGAAGCCATGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCTTGTTTTGTTCAGTTTGAGTTACTTTGAAGCCATGGCTA  150

seq1  GAATGGAACTCACTGTGTCCTGTGACTCCTTTTGCCTACCAAATGCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAACTCACTGTGTCCTGTGACTCCTTTTGCCTACCAAATGCTAGA  200

seq1  ATTACTGATGCACCACCACAGCACAGTTAAGTCAGAATTTTCAGGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATGCACCACCACAGCACAGTTAAGTCAGAATTTTCAGGGTAAA  250

seq1  CATTTTCGACCTTTTCCTATAACATTGCTTATAGTGTAGACATATCCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCGACCTTTTCCTATAACATTGCTTATAGTGTAGACATATCCCGT  300

seq1  GTTTCTCACTCATACCTTTGAAGATGCTTACTATCAATCCCACCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACTCATACCTTTGAAGATGCTTACTATCAATCCCACCAGAAAT  350

seq1  GCCTCTGGTGATGTTTGCTGTAAACTAATAGAGTAACCATGCTGTTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGTGATGTTTGCTGTAAACTAATAGAGTAACCATGCTGTTACTC  400

seq1  ACTGAAAAACCATATTAAGGTCACTGGATTGTCTCAGACAAGATGTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAACCATATTAAGGTCACTGGATTGTCTCAGACAAGATGTTAGA  450

seq1  TTCTCTCAAATTGGTTTTTCTGAGTGAGGCTTCAATTCTAGATCTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAAATTGGTTTTTCTGAGTGAGGCTTCAATTCTAGATCTCCTTT  500

seq1  ATAGCCATTTGGTATCATTTATTGAAATTGCCAGCACTTGCATTTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATTTGGTATCATTTATTGAAATTGCCAGCACTTGCATTTGCCTT  550

seq1  TTCTCTTCTAAGAAGCAGACAATCTAGTACAATGTGACATCCTCTAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTAAGAAGCAGACAATCTAGTACAATGTGACATCCTCTAGCTG  600

seq1  TCACCAAATGTAACCTAGCAAAATTGTTACAGCTCAGAGCTGTTACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAATGTAACCTAGCAAAATTGTTACAGCTCAGAGCTGTTACTGTC  650

seq1  TAATCTGAAGGCCAGGATTATAAGTAATATCATCACCTGAAGGTAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAAGGCCAGGATTATAAGTAATATCATCACCTGAAGGTAAGTAA  700

seq1  GTGAGCAAATATCTCAGGTCCACTATACTTCTTTGCCTCTGACAACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAATATCTCAGGTCCACTATACTTCTTTGCCTCTGACAACCAAG  750

seq1  GTTGTTGCTCTCAGTCCAAATAACTACCAAGCAGTGATTGTTCCCTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTCTCAGTCCAAATAACTACCAAGCAGTGATTGTTCCCTTATG  800

seq1  TAGCCACTCACTAACCACAAACCAAAATAAGAGACTAAAAATATTTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTCACTAACCACAAACCAAAATAAGAGACTAAAAATATTTTAAC  850

seq1  AATTTCATTTCATTAGCCTACATTATGCCTTTTAATGTCCTCTGAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTCATTAGCCTACATTATGCCTTTTAATGTCCTCTGAGATAA  900

seq1  GTAGCAGGAACTGATAACACACGGTGCTCCTTTATTTGAGTAATAGGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGAACTGATAACACACGGTGCTCCTTTATTTGAGTAATAGGTAC  950

seq1  AACTCTTCACCCCTTCTCTTCTTTACTCATTCATTCCATGTATTCATTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCACCCCTTCTCTTCTTTACTCATTCATTCCATGTATTCATTAA  1000

seq1  ACACTGACTCTAGACCACGCACTAGGGGATGCAGTGAAAAAGAAAT-AAA  1049
      |||||||||||||| ||||||||||||||||||||| ||||||||| |||
seq2  ACACTGACTCTAGA-CACGCACTAGGGGATGCAGTG-AAAAGAAATAAAA  1048

seq1  ACATTGTC-TCTGCTTTGAAGAAGGCACGATACTATGTAAAGATCATTTC  1098
      |||||||| |||||||||||||| |||||||||||| |  ||||||||||
seq2  ACATTGTCTTCTGCTTTGAAGAA-GCACGATACTAT-TGTAGATCATTTC  1096

seq1  TGACAGAGCCTTAT-ATTAACCTTG-TCTGTATAAATTTATATTAAAATT  1146
      |||||||||||||| ||||| |||| | ||||||| ||||  | ||||||
seq2  TGACAGAGCCTTATAATTAAACTTGTTTTGTATAATTTTAATTAAAAATT  1146

seq1  AAATAGAGTAATTTGGTCTTAAAAGAGTTTCTCCATGAGTAATTTTGTAA  1196
      ||||||||| ||||||||||  ||||| |||  ||||||||  |||||| 
seq2  AAATAGAGTTATTTGGTCTT--AAGAGGTTCCTCATGAGTA--TTTGTA-  1191

seq1  GGTAATGATCGG-ACTTACATGTTAATG  1223
       |  |||||||| ||||  |||||||||
seq2  -GGCATGATCGGAACTTTAATGTTAATG  1218

seq1: chr4_76257384_76258362
seq2: B6Ng01-167H08.g_66_1035 (reverse)

seq1  CCCCCAAAAACATCTTGGAAATCATGTTGATGCCCTTGAGAGGATCTGTT  50
      ||||| |||||||||    ||||||||||||| ||||||   ||||||| 
seq2  CCCCCCAAAACATCT---GAATCATGTTGATG-CCTTGAAGAGATCTGT-  45

seq1  AATATTTCCCAGGTTTCCTGGGACATATCAGCCTAACTTCAGTGGGTTCT  100
       ||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  -ATA-TTCCCAGGTTTCCTGGAACATATCAGCCTAACTTCAGTGGGTTCT  93

seq1  GTTAGGTCTCAGAGGTGCCTATTTTACATATCAAGAGGATTCTGGCCTGA  150
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GTTAGGTCTCAGAGGTGCCTA-TTTACATATCAAGAGGATTCTGG-CTGA  141

seq1  GGACCTATTCCTCAGGCCCTATTAGTCTTCCTGGCTGATATATCCTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTATTCCTCAGGCCCTATTAGTCTTCCTGGCTGATATATCCTACCC  191

seq1  CATACCCTAAACTAACCAGCTTACCTTCTTTCCCCCCAGCTTCTCTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTAAACTAACCAGCTTACCTTCTTTCCCCCCAGCTTCTCTGACT  241

seq1  GCTATAAAATCTCAGCCATTTTGGAAGCCAGTCCTTTTGGCCTTTTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAAATCTCAGCCATTTTGGAAGCCAGTCCTTTTGGCCTTTTGGCC  291

seq1  TCTTGGTCTCTGCATTCCTGAGAACTCTCTTTGTTCCCCTTCTCTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTCTGCATTCCTGAGAACTCTCTTTGTTCCCCTTCTCTTCTTT  341

seq1  TCTTTTCCTCTCTTAATATTTGCACAAACTTTTTTATGACCTCATTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCTCTTAATATTTGCACAAACTTTTTTATGACCTCATTCAGT  391

seq1  CTGGGCTCTGTCAGATGCCTCTGGCTGTGCTTTCCCTCATATCTACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTGTCAGATGCCTCTGGCTGTGCTTTCCCTCATATCTACACTA  441

seq1  AACCTTCTCCTCTACCATACCTCCGAGTAGCCCTGCCCTCATTCATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTCCTCTACCATACCTCCGAGTAGCCCTGCCCTCATTCATTATT  491

seq1  TTTATTCAGGTTCCTTACTCCAAAGAGTAAACTCCTTCCTGTCACATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGGTTCCTTACTCCAAAGAGTAAACTCCTTCCTGTCACATATC  541

seq1  ATTCACAACCATGATGTGTGAAAGAAGTCAACCAGCAATTATGACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACCATGATGTGTGAAAGAAGTCAACCAGCAATTATGACCACAT  591

seq1  TGACCTTTCCAAGTTTTCCTATTCCAGGACAAATTCTTGTAAGATGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCCAAGTTTTCCTATTCCAGGACAAATTCTTGTAAGATGTATT  641

seq1  TCCCTGTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTATGTTTTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTATGTTTTTGTTTTT  691

seq1  TGTTTTTGTTTCGTTTTGGAAAGCTTAGATTTCTTCCTGTTTGTGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTCGTTTTGGAAAGCTTAGATTTCTTCCTGTTTGTGTGAAA  741

seq1  GCTCTTAGCAAAATTGATTGCGTTACTGCTTATTAAAAACTGGAGCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCAAAATTGATTGCGTTACTGCTTATTAAAAACTGGAGCAAGG  791

seq1  TTTTTCTGTACTAATGTTGTGAAGAGGAATTCTGGCCTGATATAAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTACTAATGTTGTGAAGAGGAATTCTGGCCTGATATAAATGTG  841

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTTAAATATTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTTAAATATTTGTTT  891

seq1  TCTCTCCACCTCCTAAGTAGAGTGCCATGATTCATGGCCTAAATGCTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACCTCCTAAGTAGAGTGCCATGATTCATGGCCTAAATGCTACC  941

seq1  TGATGTCTTTGGAGATAAAGATGGAATTC  979
      |||||||||||||||||||||||||||||
seq2  TGATGTCTTTGGAGATAAAGATGGAATTC  970