BAC Information

Click to search

BAC

Clone NameB6Ng01-167K05
Chromosome4 (Build37)
Map Location 14,140,751 - 14,141,563
singlet/doubletsinglet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K05.bB6Ng01-167K05.g
ACCDH959078DH959079
length9821,266
definitionDH959078|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K05, 5' end.DH959079|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaatacttttcaaaccttactatgtgcaactatcatatcccat
acaaattttatgataggaataaattgactgtcttctgcttttaactggtt
ttagagataatgtctcaatgtgttggcttggaactcctatgtaggccaga
ctgacctatgactcactagatctgagcctgtctccagagtgctaagattg
aaagcatgtaccacacatggcttataaatttgataaactataatagattg
taatgcagatgcaagttggctatatgctcatattttatcaaattgaatga
agcaactaatatgttctacttagaacaccagtgaagacagatgtgggcat
ttccctgcaggaggatagagctctttgggatacccaggagtggtgttcct
gaatcacatggtattctatttctgaattttgagtaaacgccacattgtgt
tcctaatgactctaactagttaggcctccctccagggatgaataagggtt
ctccttacccatcccacaccagcatttgttggttgttgtttttgtttgtt
tatttatttgtttgttttattttgtttctgggatctattctggctggagt
gagtggagagggatggaatcttaaagtagtcttctaatggctaagaatgt
tgaacatgttttagttatttgctagtcagtcatagttttttcttccagtc
ttatctaaagatgcctgtctctgcagagagtgctggtaatgagtacagag
gctcgtgggtgcttttaccattctgacataagtgatgctttctgtgctca
accataataggatacttatacttcccttaagacttcaggaacaggataga
agggagagcagaatgtcagagcagaaagataaagggcaaccttcaaaatg
ccatttttctaagataacacagctatttacaatcatgacccataaggtat
agttttggatactggggcctgggatgaaactg
gaattccaactcaaaggaccagaaaatattttcaatagaatgatagaaga
aaattgtcctaacctaaaaaggagaggcctataaaagtacaagaagcttg
cagaacaccacaataaattggatcagaaaagaaactactcttactatata
ataaatcagtaaatatgtagaacaaagaaagtgtattaaaagcacatagg
aaaaagacagagtagcatacattcaaattcccaatgcaaactctaaggat
caggaaggtttgaatagatgtgttgcaatctaagagaccacagatgctaa
ctcagattattatacccatcaaaatcttcaatcactatagataaggaaaa
caagatgttctatgataaagctgaactgaaatgatatctatcatctgtat
gctcagccatacagaaggtgatagaaggaaaattccagactaaacaggtt
aaatactcacacaaatacggggaaaataattataatagcatatcaggaaa
accaaaataagggaaacacacacacatacactcatgccctatcaccacca
ccaccaccaccaacaacaacaacaacaacaacaaaacaggaattaattat
tattggtcattggtaactctcaatgtcaatggcctcaataaaaagacaca
gattaacagaatggatatgtaacgggttcatcctcctgttacatacaaga
aacacacctgaatatcaaagatagacattaccccaggataaggagttgga
aaaatatatgtcaagaaaatggccctaagaagaaaattgaagtagccatt
ttagtatccaacacaaaagacttcaaaccaaaataatcaaaaagatggaa
aaggatactatatattcctttaagtaaaacccaccaagataacacttcaa
tgttaacatttatgcacaaatacaaggtgcccccctttgtaaacaaacac
tattgcagtttaaattacacactgatcctcacacattgatagtggcagac
ttcagtaccccactctctctatggacatgttatcagatgaaattaacaga
gaaatgttggagttactggtgttataaacaatgaacttacaattttataa
acttccacccaaacaataatgtactttttccaggactctatagaactttc
aattgcactactgacaaaacaggtcatattcaattggaatctcgtgactc
tcctctctaggattagcgtgatacacaattggaacacgacacatgttgca
cacctctagtgggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14140751_14141563
seq2: B6Ng01-167K05.b_45_860

seq1  GAATTCAAAATACTTTTCAAACCTTACTATGTGCAACTATCATATCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATACTTTTCAAACCTTACTATGTGCAACTATCATATCCCAT  50

seq1  ACAAATTTTATGATAGGAATAAATTGACTGTCTTCTGCTTTTAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTATGATAGGAATAAATTGACTGTCTTCTGCTTTTAACTGGTT  100

seq1  TTAGAGATAATGTCTCAATGTGTTGGCTTGGAACTCCTATGTAGGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATAATGTCTCAATGTGTTGGCTTGGAACTCCTATGTAGGCCAGA  150

seq1  CTGACCTATGACTCACTAGATCTGAGCCTGTCTCCAGAGTGCTAAGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTATGACTCACTAGATCTGAGCCTGTCTCCAGAGTGCTAAGATTG  200

seq1  AAAGCATGTACCACACATGGCTTATAAATTTGATAAACTATAATAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTACCACACATGGCTTATAAATTTGATAAACTATAATAGATTG  250

seq1  TAATGCAGATGCAAGTTGGCTATATGCTCATATTTTATCAAATTGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGATGCAAGTTGGCTATATGCTCATATTTTATCAAATTGAATGA  300

seq1  AGCAACTAATATGTTCTACTTAGAACACCAGTGAAGACAGATGTGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAATATGTTCTACTTAGAACACCAGTGAAGACAGATGTGGGCAT  350

seq1  TTCCCTGCAGGAGGATAGAGCTCTTTGGGATACCCAGGAGTGGTGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCAGGAGGATAGAGCTCTTTGGGATACCCAGGAGTGGTGTTCCT  400

seq1  GAATCACATGGTATTCTATTTCTGAATTTTGAGTAAACGCCACATTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACATGGTATTCTATTTCTGAATTTTGAGTAAACGCCACATTGTGT  450

seq1  TCCTAATGACTCTAACTAGTTAGGCCTCCCTCCAGGGATGAATAAGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGACTCTAACTAGTTAGGCCTCCCTCCAGGGATGAATAAGGGTT  500

seq1  CTCCTTACCCATCCCACACCAGCATTTGTTGGTTGTTGTTTTTGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCCATCCCACACCAGCATTTGTTGGTTGTTGTTTTTGTTTGTT  550

seq1  TATTTATTTGTTTGTTTTATTTTGTTTCTGGGATCTATTCTGGCTGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTTTGTTTTATTTTGTTTCTGGGATCTATTCTGGCTGGAGT  600

seq1  GAGTGGAGAGGGATGGAATCTTAAAGTAGTCTTCTAATGGCTAAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGAGGGATGGAATCTTAAAGTAGTCTTCTAATGGCTAAGAATGT  650

seq1  TGAACATGTTTTAGTTATTTGCTAGTCAGTCATAG-TTTTTCTTCCAGTC  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAACATGTTTTAGTTATTTGCTAGTCAGTCATAGTTTTTTCTTCCAGTC  700

seq1  TTATCTAAAGATGCCTGTCTCTGCAGAGAGTGCTGGTAATGAGTACAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAAGATGCCTGTCTCTGCAGAGAGTGCTGGTAATGAGTACAGAG  750

seq1  GCTCGTGGGTGC-TTTACCATTCTGACATAAGTGATGC-TTCTGTGCTCA  797
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GCTCGTGGGTGCTTTTACCATTCTGACATAAGTGATGCTTTCTGTGCTCA  800

seq1  ACCATAATAGGATACT  813
      ||||||||||||||||
seq2  ACCATAATAGGATACT  816