BAC Information

Click to search

BAC

Clone NameB6Ng01-167O07
Chromosome4 (Build37)
Map Location 153,745,452 - 153,875,079
singlet/doubletdoublet
Overlap genePrdm16
Upstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167O07.bB6Ng01-167O07.g
ACCDH959273DH959274
length1,1781,091
definitionDH959273|Mus musculus domesticus DNA, BAC clone: B6Ng01-167O07, 5' end.DH959274|Mus musculus domesticus DNA, BAC clone: B6Ng01-167O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,745,452 - 153,746,634)(153,873,972 - 153,875,079)
sequence
gaattcagcctgtggactcccataattgccggcggaagtggcccttttgc
ccatttgcccccacttggcctctcggcccccacgtccctgccagcttccc
cagctcatcaatcactcccatcaggaataccgagttaaggagggaagaga
tggaaaaaaaaatcctcataaccttgacaattttttttgcacatcatttg
aggtttcctgcacttttaatttgtggttctctgctgggctaaactctttc
acatttaatgggtatggccagaggctggctccatatgggatgtgcacaca
ggcaggaatacagaggcatctgtcgtcagctcacctaatggattcctggc
cccgcaggaaggagtgaggcctaggagtcaccctgttggcctgtgcctta
cagctgcagcatgctccccagaagctcatgttgtgttgggtgtctgcaag
accatcacacatgtcctctactaccctcctccacactttcacacacactt
aggcacacacaacaacgcgaacacgtatgcacacacatagatacacagag
gcacatgtgtgagcacacgtgcaatagctatgatttatgacattcacggg
gagccaaaacagaaagtccattcttgggacagaaagaggagggcaggcct
tctggagacacctcagtgtggcggacatggagcctgaatgagctcataaa
tcgggtcctgacgctcattatgggcttggtggtgacatgaccaagtgcta
agcagaaactcgcggtgggatggagtctattgctgccagcagacaggagc
ttggctgcagggactgggaggtcaggggcccatctgctcaagctgagagg
ggaggcaatcgaagactaggaggcagagagtggtagagtgtgttgtctgg
gtctgtctgtcccctctgacctgggcctccactggacagcttgccaggct
aggggtacacaatggagtatgggagagagttacagggagacccagagcac
agggtttggatgctgcgagggaggggtgctttctgagcatggactctgct
gacagatctgggtgacatcttaatcctcctcactggaagacttggcttcc
tatgacgttcacaggcagatctctctgacttagggtccaactaagaaaga
catgctataaaagtacagaattctcatt
gaattcctgatcagcccctagacatggagggcagggtctgtacataggga
tgatcagtcacactcgtgggctccggcactcaattggccatgtactcaca
tgcacacatgcgcccacatgggtggacacgatggacctgtttattagcag
acttctgagatgtagctctccgggtttgggtccaggcagccctcctagat
aatggttttggctcctccgtctgtttctctttgttctccttaaaggaccg
tgttcatctgctctctagactgggtgtcttcacactcttctcatgggttg
gggggtctctgtaccttggaactaagatggagccagactagggatgtatt
ctaccctggacacacattgggcagcatgggtgcagggcagacatcccaca
cgctactctggaagtctctttacccccctccacttccaccccacccccgg
ctcttgggaagatgtgttctgtgctcaggaaggcattagctactgtgggt
ctctctcctgttttcagcttctgtttttctggtgaagaacttcctcaccg
gcttgccccagaaagctttgccacctgctggaccccagtcgttcctcaaa
gtacagaatgggcctccagacgaagcgtcctggggacatggggatattcc
gctggttgagcaatagcttctggggctagaacagggaatatctctgcact
gttaacagaaggcccctccacatttgtagcaaggggccccccggctccgg
ggtgcacagcgccttgggatgtgttttctacgcagcctccctgtgcacag
aaaccgaaaaccgcatgccgacaaacagctccctcggcaaacgtttttat
ttccaattagcaaaagaaaattgctaatttgctgtagttggaccgggctg
acgtctcaatctgcgagtgtcagagcagtgaagaaaatgcttcacactgt
gctggcgagagccagcagctctagagggtcagggcagcgggccagaaacc
agattgactggcacagcgctaatactccccagaacacatttgtctgcgtg
cacctccggaggactgcttttcattttctcccttgagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153745452_153746634
seq2: B6Ng01-167O07.b_47_1224

seq1  GAATTCAGCCTGTGGACTCCCATAATTGCCGGCGGAAGTGGCCCTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGTGGACTCCCATAATTGCCGGCGGAAGTGGCCCTTTTGC  50

seq1  CCATTTGCCCCCACTTGGCCTCTCGGCCCCCACGTCCCTGCCAGCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCCCCCACTTGGCCTCTCGGCCCCCACGTCCCTGCCAGCTTCCC  100

seq1  CAGCTCATCAATCACTCCCATCAGGAATACCGAGTTAAGGAGGGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATCAATCACTCCCATCAGGAATACCGAGTTAAGGAGGGAAGAGA  150

seq1  TGGAAAAAAAAATCCTCATAACCTTGACAATTTTTTTTGCACATCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAAAATCCTCATAACCTTGACAATTTTTTTTGCACATCATTTG  200

seq1  AGGTTTCCTGCACTTTTAATTTGTGGTTCTCTGCTGGGCTAAACTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCTGCACTTTTAATTTGTGGTTCTCTGCTGGGCTAAACTCTTTC  250

seq1  ACATTTAATGGGTATGGCCAGAGGCTGGCTCCATATGGGATGTGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATGGGTATGGCCAGAGGCTGGCTCCATATGGGATGTGCACACA  300

seq1  GGCAGGAATACAGAGGCATCTGTCGTCAGCTCACCTAATGGATTCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAATACAGAGGCATCTGTCGTCAGCTCACCTAATGGATTCCTGGC  350

seq1  CCCGCAGGAAGGAGTGAGGCCTAGGAGTCACCCTGTTGGCCTGTGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAGGAAGGAGTGAGGCCTAGGAGTCACCCTGTTGGCCTGTGCCTTA  400

seq1  CAGCTGCAGCATGCTCCCCAGAAGCTCATGTTGTGTTGGGTGTCTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGCATGCTCCCCAGAAGCTCATGTTGTGTTGGGTGTCTGCAAG  450

seq1  ACCATCACACATGTCCTCTACTACCCTCCTCCACACTTTCACACACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACACATGTCCTCTACTACCCTCCTCCACACTTTCACACACACTT  500

seq1  AGGCACACACAACAACGCGAACACGTATGCACACACATAGATACACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACACAACAACGCGAACACGTATGCACACACATAGATACACAGAG  550

seq1  GCACATGTGTGAGCACACGTGCAATAGCTATGATTTATGACATTCACGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTGTGAGCACACGTGCAATAGCTATGATTTATGACATTCACGGG  600

seq1  GAGCCAAAACAGAAAGTCCATTCTTGGGACAGAAAGAGGAGGGCAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAACAGAAAGTCCATTCTTGGGACAGAAAGAGGAGGGCAGGCCT  650

seq1  TCTGGAGACACCTCAGTGTGGCGGACATGGAGCCTGAATGAGCTCATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACACCTCAGTGTGGCGGACATGGAGCCTGAATGAGCTCATAAA  700

seq1  TCGGGTCCTGACGCTCATTATGGGCTTGGTGGTGACATGACCAAGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTCCTGACGCTCATTATGGGCTTGGTGGTGACATGACCAAGTGCTA  750

seq1  AGCAGAAACTCGCGGTGGGATGGAGTCTATTGCTGCCAGCAGACAGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAACTCGCGGTGGGATGGAGTCTATTGCTGCCAGCAGACAGGAGC  800

seq1  TTGGCTGCAGGGACTGGGAGGTCAGGGGCCCATCTGCTCAAGCTGAGA-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGGCTGCAGGGACTGGGAGGTCAGGGGCCCATCTGCTCAAGCTGAGAGG  850

seq1  GGAGGCAATCGAAGACTAGGAGGCAGAGAGTGGTAGAGTGTGTTGTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAATCGAAGACTAGGAGGCAGAGAGTGGTAGAGTGTGTTGTCTGG  900

seq1  GTCTGTCTGTCCCCTCTGACCTGGGCCTCCACTGGACAGC-TGCCAGGCT  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTGTCTGTCCCCTCTGACCTGGGCCTCCACTGGACAGCTTGCCAGGCT  950

seq1  AGGGGTACACAATGGAGGTATGGGAGAGAGTTACAGGGAGACCCCAGAGC  998
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AGGGGTACACAATGGA-GTATGGGAGAGAGTTACAGGGAGA-CCCAGAGC  998

seq1  ACAGGGTTTGGATGCTGCCGAGGGAGGGGTGCTGTCTGAGCAGGGACTCT  1048
      ||||||||||||||||| ||||||||||||||| |||||||| |||||||
seq2  ACAGGGTTTGGATGCTG-CGAGGGAGGGGTGCTTTCTGAGCATGGACTCT  1047

seq1  GCTGACAGGTTCTGGTGACATCCTAATTCCTCCTCACCTGGAGAACTTGG  1098
      |||||||| |   ||||||||| ||| ||||||||| |||||  ||||||
seq2  GCTGACAGATCTGGGTGACATCTTAA-TCCTCCTCA-CTGGAAGACTTGG  1095

seq1  C-TCCTATGACG-TCACAGGCAGATCCTCTCAG-CTCAGAGCCACACCAA  1145
      | |||||||||| |||||||||||| ||||| | || || | |  || ||
seq2  CTTCCTATGACGTTCACAGGCAGAT-CTCTCTGACTTAGGGTCCAACTAA  1144

seq1  GAAAAGCATGTCATAAAAAAGTCACAGAATTCTACATT  1183
      ||||  ||||   || |||||| |||||||||| ||||
seq2  GAAAGACATG--CTATAAAAGT-ACAGAATTCT-CATT  1178

seq1: chr4_153873972_153875079
seq2: B6Ng01-167O07.g_68_1158 (reverse)

seq1  TGCACTCCAAGGGGAGAGAATGAGAAAGCAGGTCCTCCGGGAGCTGGCAC  50
      |||||||  | |||||| ||||| |||||| ||||||| |||| | ||||
seq2  TGCACTC--AAGGGAGAAAATGA-AAAGCA-GTCCTCC-GGAGGT-GCAC  44

seq1  GGCAGACAATGTGTGTCTTGTGTGAGTAATTTAGCGCTGTGGCCAGTCAA  100
       ||||||||  |||||  || | |||||  |||||||||| |||||||||
seq2  -GCAGACAA-ATGTGTTCTG-GGGAGTA--TTAGCGCTGT-GCCAGTCAA  88

seq1  TCTGGTTTCTGGGCCCGCTGCCCTGACCCTCTTAGAGCTGCTGGCTCTCG  150
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCTGGTTTCT-GGCCCGCTGCCCTGACCCTC-TAGAGCTGCTGGCTCTCG  136

seq1  CCAGCACAGTGTGAAGCATTTTCTTTCACTGCTCTGACACTCCGCAGATT  200
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CCAGCACAGTGTGAAGCATTTTC-TTCACTGCTCTGACACT-CGCAGATT  184

seq1  GAGACGTCAGCCCGGTCCAACTACAGCAAATTAGCAATTTTTCTTTTGCT  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGACGTCAGCCCGGTCCAACTACAGCAAATTAGCAA-TTTTCTTTTGCT  233

seq1  AATTGGAAATAAAAACGTTTGCCGAGGGAGCTGTTTGTCGGCATGCGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAATAAAAACGTTTGCCGAGGGAGCTGTTTGTCGGCATGCGGTT  283

seq1  TTCGGTTTCTGTGCACAGGGAGGCTGCGTAGAAAACACATCCCAAGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTTCTGTGCACAGGGAGGCTGCGTAGAAAACACATCCCAAGGCGC  333

seq1  TGTGCACCCCGGAGCCGGGGGGCCCCTTGCTACAAATGTGGAGGGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCCCGGAGCCGGGGGGCCCCTTGCTACAAATGTGGAGGGGCCTT  383

seq1  CTGTTAACAGTGCAGAGATATTCCCTGTTCTAGCCCCAGAAGCTATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACAGTGCAGAGATATTCCCTGTTCTAGCCCCAGAAGCTATTGCT  433

seq1  CAACCAGCGGAATATCCCCATGTCCCCAGGACGCTTCGTCTGGAGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCGGAATATCCCCATGTCCCCAGGACGCTTCGTCTGGAGGCCCA  483

seq1  TTCTGTACTTTGAGGAACGACTGGGGTCCAGCAGGTGGCAAAGCTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTTTGAGGAACGACTGGGGTCCAGCAGGTGGCAAAGCTTTCTG  533

seq1  GGGCAAGCCGGTGAGGAAGTTCTTCACCAGAAAAACAGAAGCTGAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGCCGGTGAGGAAGTTCTTCACCAGAAAAACAGAAGCTGAAAACA  583

seq1  GGAGAGAGACCCACAGTAGCTAATGCCTTCCTGAGCACAGAACACATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGACCCACAGTAGCTAATGCCTTCCTGAGCACAGAACACATCTT  633

seq1  CCCAAGAGCCGGGGGTGGGGTGGAAGTGGAGGGGGGTAAAGAGACTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCCGGGGGTGGGGTGGAAGTGGAGGGGGGTAAAGAGACTTCCA  683

seq1  GAGTAGCGTGTGGGATGTCTGCCCTGCACCCATGCTGCCCAATGTGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCGTGTGGGATGTCTGCCCTGCACCCATGCTGCCCAATGTGTGTC  733

seq1  CAGGGTAGAATACATCCCTAGTCTGGCTCCATCTTAGTTCCAAGGTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGAATACATCCCTAGTCTGGCTCCATCTTAGTTCCAAGGTACAG  783

seq1  AGACCCCCCAACCCATGAGAAGAGTGTGAAGACACCCAGTCTAGAGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCCCAACCCATGAGAAGAGTGTGAAGACACCCAGTCTAGAGAGCA  833

seq1  GATGAACACGGTCCTTTAAGGAGAACAAAGAGAAACAGACGGAGGAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACACGGTCCTTTAAGGAGAACAAAGAGAAACAGACGGAGGAGCCA  883

seq1  AAACCATTATCTAGGAGGGCTGCCTGGACCCAAACCCGGAGAGCTACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTATCTAGGAGGGCTGCCTGGACCCAAACCCGGAGAGCTACATC  933

seq1  TCAGAAGTCTGCTAATAAACAGGTCCATCGTGTCCACCCATGTGGGCGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTCTGCTAATAAACAGGTCCATCGTGTCCACCCATGTGGGCGCA  983

seq1  TGTGTGCATGTGAGTACATGGCCAATTGAGTGCCGGAGCCCACGAGTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGAGTACATGGCCAATTGAGTGCCGGAGCCCACGAGTGTG  1033

seq1  ACTGATCATCCCTATGTACAGACCCTGCCCTCCATGTCTAGGGGCTGATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCATCCCTATGTACAGACCCTGCCCTCCATGTCTAGGGGCTGATC  1083

seq1  AGGAATTC  1108
      ||||||||
seq2  AGGAATTC  1091