BAC Information

Click to search

BAC

Clone NameB6Ng01-168H04
Chromosome4 (Build37)
Map Location 145,571,921 - 145,729,229
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H04.bB6Ng01-168H04.g
ACCDH959683DH959684
length1,023972
definitionDH959683|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H04, 5' end.DH959684|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,728,199 - 145,729,229)(145,571,921 - 145,572,899)
sequence
gaattcctcggcctttatcatcataccaatccttagttaaattaactggt
aaataaacataatcaggttgcttaacaatcaaaaaattacttaaggtata
attaacacagttagttatttgacaattagtacagttaacagtattattat
ctatcaataaattcccactcaaagaagcctatggctctggaacacacaaa
catacaaaaacttcaatcttattgtgtttgtcctgaaatgccatgatatt
ccacataggaatccaggtaattgtggactcccactcgccagcaagtaaga
tgccacaacaggatccttctgcaacatgtttattgggagagcatggactg
agtaggcgaaagaccccgagccccagaaatggtgctacttatataggcct
aaggagtgacgtgtccataactgattggttatgctaccagtacctcatta
atatgcctcgagccaggcagtgactcggcaaaaaactctggcacatgcgc
acattggttgtttacccatattcatgggcattggcttactgaaaccggtg
ccatcttgtaatggcgtttgcggcttcccacatctccccctttttattgt
aataaaatgatgctggattaggcctatgcaattatgtccatccactacgg
ctcctgttttaggtcgttcctctgtgtcacagccttacctgtcatagggt
aaccctatcgccaccaggccgcgtgtcttacgttgctctgtgcatgatga
aagttgcccatctttggataacgcaatgctgtgtgacagtaattgctaaa
tgacttattttgtgcgtcctgaaatgccatgatattcccgatatgaagcc
aggcgatgttaatgcttttaactgtttcatcccagaggctgcatggcctt
tcttatgaagaataataaagttacattatgtttagtcccatttccatgat
gcacatggtaggacgatgattagtatatccaaagattctattgcacaggg
agtattagagcgaggcatgaaat
gaattccctacttcatgttccctgtgccttccatcctctgtgtgtctgtt
cagttagtttaaatctgtaacttcctgaaggctaccttgtgtatatctcc
ctttctgtctgccttttgtctccatgtttgtgtctatctgagtaatctgt
tgtttgtttgtatctctctggctgggcataagagagagctttggagtgtt
tctagaacattaagggaaccatcacgtggggaaagaatgggacagtgaac
agtaatctttaacagagttttataaaggattaggtaactggctgtgaggt
ccaggaaaattctccatctattaaaaggtaagatcttttatataatatat
tgtcacactcatggttctgccaatgcataggaaaggaccacggagcaaga
ctccatggagttctgttggatacattcttagtaagatatctgcaaaaaaa
aattttttttgaaaagtaccactttataagtgtatgaagatggtttaaat
gaagtctttgaatactgaaagagatggagttccagttgatcttgtctttt
caactgtgttacatcaagaaagttgctagccaaagtgatctcataaaaat
acccagagaatgcaggccactgacaacaaaaggggttgcttttcacaaac
tgacaataagtcttcattgctaaagacagggctgacacaaaacactgtat
atgaaaagggcaaactggtgccggtaagaacattgactcttatattccag
tgtcctcattagggaagatgctttgaaaggtacacaaagtaaaatatata
cacagaaccaaccaaaaagacgtcgatctatacttttccttttcagaaaa
tatgcttagggcaatgatgtcatggatttactgggataaccaatcatgtc
taatttgactggaataccaaagcactttggttaaatgtatatactatata
cacagtgtgcgtggacatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145728199_145729229
seq2: B6Ng01-168H04.b_43_1065 (reverse)

seq1  ATTTCATGCCTTTGCTCTAATACCACCCTGTGTGATTGGAATATTTTGGA  50
      |||||||||| | ||||||||| | |||||||  | | ||||  ||||||
seq2  ATTTCATGCC-TCGCTCTAATA-CTCCCTGTG-CAATAGAAT-CTTTGGA  46

seq1  TTATACTAATCATCGTCCTATTAATTTGGTTCATGGAATTGGGACAAAAA  100
       |||||||||||||||||||   || ||  |||||||| |||||| ||| 
seq2  -TATACTAATCATCGTCCTA-CCATGTGCATCATGGAAATGGGACTAAAC  94

seq1  ATAATGAAAC-TTATTTTTCTTCATTAAGAAAAGCCATTGCAGCCCTTGG  149
      |||||| ||| ||||| ||||||| ||||||| |||| |||||||  |||
seq2  ATAATGTAACTTTATTATTCTTCA-TAAGAAAGGCCA-TGCAGCCTCTGG  142

seq1  GATGATAACAGTTAAAAGAATTAACATCACCTGGCTTCCTATCGGGAATA  199
      ||||| |||||||||||| ||||||||| ||||||||| |||||||||||
seq2  GATGA-AACAGTTAAAAGCATTAACATCGCCTGGCTTCATATCGGGAATA  191

seq1  TCATGGCATTTCAGGACGAACAAAATAAGTCATTTAGCAATTACTGTCAC  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATGGCATTTCAGGACGCACAAAATAAGTCATTTAGCAATTACTGTCAC  241

seq1  ACAGCATTGCGTTATCCAAAGATGGGCAACTTTCCTCATGCACAGAGCAA  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGCATTGCGTTATCCAAAGATGGGCAACTTTCATCATGCACAGAGCAA  291

seq1  CCTAAGACACGGGGCCTGGTGGCGATAGGGTTACCCTATGACAGGTAAGG  349
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGACACGCGGCCTGGTGGCGATAGGGTTACCCTATGACAGGTAAGG  341

seq1  CTGTGACACAGAGGAACGACCTAAAACAGGAGCCGTAGTGGATGGACATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACACAGAGGAACGACCTAAAACAGGAGCCGTAGTGGATGGACATA  391

seq1  ATTGCATAGGCCTAATCCAGCATCATTTTATTACAATAAAAAGGGGGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATAGGCCTAATCCAGCATCATTTTATTACAATAAAAAGGGGGAGA  441

seq1  TGTGGGAAGCCGCAAACGCCATTACAAGATGGCACTGGTTTCAGTAAGCC  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGGGAAGCCGCAAACGCCATTACAAGATGGCACCGGTTTCAGTAAGCC  491

seq1  AATGCCCATGAATATGGGTAAACAACCAATGTGCGCATGTGCCAGAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCATGAATATGGGTAAACAACCAATGTGCGCATGTGCCAGAGTTT  541

seq1  TTTGCCGAGTCACTGCCTGGCTCGAGGCATATTAATGAGGTACTGGTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGAGTCACTGCCTGGCTCGAGGCATATTAATGAGGTACTGGTAGC  591

seq1  ATAACCAATCAGTTATGGACACGTCACTCCCTAGGCCTATATAAGTAGCA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAACCAATCAGTTATGGACACGTCACTCCTTAGGCCTATATAAGTAGCA  641

seq1  CCATTTCTGGGGCTCGGGGTCTTTCGCCTACTCAGTCCATGCTCTCCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGGGGCTCGGGGTCTTTCGCCTACTCAGTCCATGCTCTCCCAA  691

seq1  TAAACATGTTGCAGAAGGATCCTGTTGTGGCATCTTACTTGCTGGCGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGTTGCAGAAGGATCCTGTTGTGGCATCTTACTTGCTGGCGAGT  741

seq1  GGGAGTCCACAATTACCTGGATTCCTATGTGGAATATCATGGCATTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCACAATTACCTGGATTCCTATGTGGAATATCATGGCATTTCAG  791

seq1  GACAAACACAATAAGACTGAAGTTTTTGTATGTTTGTGTGTTCCAGAGCC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACAAACACAATAAGATTGAAGTTTTTGTATGTTTGTGTGTTCCAGAGCC  841

seq1  ATAGGCTTCTTTGAGTGGGAATTTATTGATAGATAATAATACTGTTAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTCTTTGAGTGGGAATTTATTGATAGATAATAATACTGTTAACT  891

seq1  GTACTAATTGTCAAATAACTAACTGTGTTAATTATACCTTAAGTAATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTGTCAAATAACTAACTGTGTTAATTATACCTTAAGTAATTTT  941

seq1  TTGATTGTTAAGCAACCTGATTATGTTTATTTACCAGTTAATTTAACTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTAAGCAACCTGATTATGTTTATTTACCAGTTAATTTAACTAA  991

seq1  GGATTGGTATGATGATAAAGGCCGAGGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  GGATTGGTATGATGATAAAGGCCGAGGAATTC  1023

seq1: chr4_145571921_145572899
seq2: B6Ng01-168H04.g_68_1039

seq1  GAATTCTCTACTTCATGTTCCCTGTGCCTTCCATCCTCTGTGTGTCTGTT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACTTCATGTTCCCTGTGCCTTCCATCCTCTGTGTGTCTGTT  50

seq1  CAGTTAGTTTAAATCTGTAACTTCCTGAAGGCTACCTTGTGTATATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTTTAAATCTGTAACTTCCTGAAGGCTACCTTGTGTATATCTCC  100

seq1  CTTTCTGTCTGCCTTTTGTCTCCATGTTTGTGTCTATCTGAGTAATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCTGCCTTTTGTCTCCATGTTTGTGTCTATCTGAGTAATCTGT  150

seq1  TGTTTGTTTGTATCTCTCTGGCTGGGCATAAGAGAGAGCTTTGGAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTATCTCTCTGGCTGGGCATAAGAGAGAGCTTTGGAGTGTT  200

seq1  TCTAGAACATTAAGGGAACCATCACGTGGGGAAAGAATGGGACAGTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACATTAAGGGAACCATCACGTGGGGAAAGAATGGGACAGTGAAC  250

seq1  AGTAATCTTTAACAGAGTTTTATAAAGGATTAGGTAACTGGCTGTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTTTAACAGAGTTTTATAAAGGATTAGGTAACTGGCTGTGAGGT  300

seq1  CCAGGAAAATTCTCCATCTATTAGAAGGTAAGATCTTTTATATAATATAT  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGGAAAATTCTCCATCTATTAAAAGGTAAGATCTTTTATATAATATAT  350

seq1  TGTCACACTCATGGTTCTGCCAATGCATAGGAAAGGACCACGGAGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACTCATGGTTCTGCCAATGCATAGGAAAGGACCACGGAGCAAGA  400

seq1  CTCCATGGAGTTCTGTTGGATACATTCTTAGTAAGATATCTGCAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGAGTTCTGTTGGATACATTCTTAGTAAGATATCTGCAAAAAAA  450

seq1  AATTTTTTTTGAAAAGTACCACTTTATAAGTGTATGAAGATGGTTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTGAAAAGTACCACTTTATAAGTGTATGAAGATGGTTTAAAT  500

seq1  GAAGTCTTTGAATACTGAAAGAGATGGAGTTCCAGTTGATCTTGTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTGAATACTGAAAGAGATGGAGTTCCAGTTGATCTTGTCTTTT  550

seq1  CAACTGTGTTACATCAAGAAAGTTGCTAGCCAAAGTGATCTCATAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGTTACATCAAGAAAGTTGCTAGCCAAAGTGATCTCATAAAAAT  600

seq1  ACCCAGAGAATGCAGGCCACTGACAACAAAAGGGGTTGCTTTTCACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGAATGCAGGCCACTGACAACAAAAGGGGTTGCTTTTCACAAAC  650

seq1  TGACAATAAGTCTTCATTGCTAAAGACAGGGCTGACACAAAACACTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAGTCTTCATTGCTAAAGACAGGGCTGACACAAAACACTGTAT  700

seq1  ATGAAAAGGGCAAACTGGTGCCAGTAAGAACATTGACTCTTATATTCCAG  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGAAAAGGGCAAACTGGTGCCGGTAAGAACATTGACTCTTATATTCCAG  750

seq1  TGTCCTCATTAGGGAAGATGCTTTGAAAGGTACACAAAGTAAAATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCATTAGGGAAGATGCTTTGAAAGGTACACAAAGTAAAATATATA  800

seq1  CACAGAACCAACCAAAAAGACGTTGATCTATAATTTTTCCTTTTCAGAAA  850
      ||||||||||||||||||||||| ||||||| | ||||||||||||||||
seq2  CACAGAACCAACCAAAAAGACGTCGATCTAT-ACTTTTCCTTTTCAGAAA  849

seq1  ATATGCTTAGGGCAATGATGTCATGAATTTACTGGGAATAACCAATCAAT  900
      ||||||||||||||||||||||||| |||||||||| |||||||||| ||
seq2  ATATGCTTAGGGCAATGATGTCATGGATTTACTGGG-ATAACCAATC-AT  897

seq1  GTCTAATTTGACTTGAATACCAAAAGCACTTTGGTTAAATGTTATATATC  950
      ||||||||||||| ||||||| ||||||||||||||||||| |||||| |
seq2  GTCTAATTTGACTGGAATACC-AAAGCACTTTGGTTAAATG-TATATA-C  944

seq1  TATATACACAAGTGTGTGTGGACATGAGT  979
      ||||||||| |||||| ||||||||||||
seq2  TATATACAC-AGTGTGCGTGGACATGAGT  972