BAC Information

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BAC

Clone NameB6Ng01-168J14
Chromosome4 (Build37)
Map Location 139,503,525 - 139,563,965
singlet/doubletdoublet
Overlap geneKlhdc7a
Upstream geneRnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667
Downstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J14.bB6Ng01-168J14.g
ACCDH959795DH959796
length1,076254
definitionDH959795|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J14, 5' end.DH959796|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,503,525 - 139,504,608)(139,563,712 - 139,563,965)
sequence
gaattcaatcctgaaagaaagccgctgagtgtggcagcgcacacctataa
acccagtatggtgggaaaggtgagagcctggccacaagtttgaggccatc
tagcaccacatagtgacatcctgtctcaaagaaacacaaaaccaaacgaa
agactaaatgtaatgaccgaattctctgaagccttctaggcaggctacaa
ataaaacccagacttcctaccctggctgtcagtgccctgagacctgacat
tgtctagctaaggaccctggctttgctctgggtgtcccctttcctgctac
tccatgccttgtgagtcttcacgggccagcttcagtgcccatgttagaag
acgccaccttaagagtgatcacttgtctcagtcttgtgtgtcatcccgtc
tccttcctgtgttggcatctgtgccagtctgacatgatgctagtcctcaa
tgtctgggtagcctgtgcctgaccccctccaaaacctttgaggaagagaa
gccagatacctgcacatcaatcatgttgaccgactaacttgccacccggt
ccttgaacctcgctggcagaggacaacctcacattccattcatcaaatgc
acacggcaagtcctcagctgcctgagtttactcagtaggtcagtaaactc
gatggatcccactgactctacctccctagcagtaggattacaagtgccct
ctgccttcgtgggacctgtggaaccgaattcatgtccttatgacagaaag
gcaggcacttgtcaactgagggccacctccccaaccctagccattctcca
caaatacagtccttggccccagtatcccacaactgggaagagactgttac
catttaatcacagctgctgagttctgcatccctgggaagagtcacacttg
cacagtgaggacccacaatgaacacagtcattagcatgctgtgtatattc
tgctgctttcaaactatattttgttaaatgccaaagtactgactgagcag
aagcctgaaagcagcaggagtgaggagcctcccttgtcttgctcgtgggg
atgaggagggaatgtgggtgtgtgtg
ttttcagattctttttacttttttccttttgtcatgtttctagtccaggg
tggattgaaataaatgttaagattagaaacaaaaaaatggcagattcact
ctcccgtgagtgcattagacttcagtgagaagcgacggggcggaggtaga
gcaatcctgaggctctgtgctcaggaaaagagtcagagaaggtcttgaga
gtggggcagaaggccagttcagggctcctgaagagagggagggggaagaa
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139503525_139504608
seq2: B6Ng01-168J14.b_45_1120

seq1  GAATTCAATCCTGAAAGAAAGCCGCTGAGTGTGGCAGCGCACACCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTGAAAGAAAGCCGCTGAGTGTGGCAGCGCACACCTATAA  50

seq1  ACCCAGTATGGTGGGAAAGGTGAGAGCCTGGCCACAAGTTTGAGGCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTATGGTGGGAAAGGTGAGAGCCTGGCCACAAGTTTGAGGCCATC  100

seq1  TAGCACCACATAGTGACATCCTGTCTCAAAGAAACACAAAACCAAACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCACATAGTGACATCCTGTCTCAAAGAAACACAAAACCAAACGAA  150

seq1  AGACTAAATGTAATGACCGAATTCTCTGAAGCCTTCTAGGCAGGCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATGTAATGACCGAATTCTCTGAAGCCTTCTAGGCAGGCTACAA  200

seq1  ATAAAACCCAGACTTCCTACCCTGGCTGTCAGTGCCCTGAGACCTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCCAGACTTCCTACCCTGGCTGTCAGTGCCCTGAGACCTGACAT  250

seq1  TGTCTAGCTAAGGACCCTGGCTTTGCTCTGGGTGTCCCCTTTCCTGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGCTAAGGACCCTGGCTTTGCTCTGGGTGTCCCCTTTCCTGCTAC  300

seq1  TCCATGCCTTGTGAGTCTTCACGGGCCAGCTTCAGTGCCCATGTTAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTTGTGAGTCTTCACGGGCCAGCTTCAGTGCCCATGTTAGAAG  350

seq1  ACGCCACCTTAAGAGTGATCACTTGTCTCAGTCTTGTGTGTCATCCCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCACCTTAAGAGTGATCACTTGTCTCAGTCTTGTGTGTCATCCCGTC  400

seq1  TCCTTCCTGTGTTGGCATCTGTGCCAGTCTGACATGATGCTAGTCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGTGTTGGCATCTGTGCCAGTCTGACATGATGCTAGTCCTCAA  450

seq1  TGTCTGGGTAGCCTGTGCCTGACCCCCTCCAAAACCTTTGAGGAAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTAGCCTGTGCCTGACCCCCTCCAAAACCTTTGAGGAAGAGAA  500

seq1  GCCAGATACCTGCACATCAATCATGTTGACCGACTAACTTGCCACCCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATACCTGCACATCAATCATGTTGACCGACTAACTTGCCACCCGGT  550

seq1  CCTTGAACCTCGCTGGCAGAGGACAACCTCACATTCCATTCATCAAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACCTCGCTGGCAGAGGACAACCTCACATTCCATTCATCAAATGC  600

seq1  ACACGGCAAGTCCTCAGCTGCCTGAGTTTACTCAGTAGGTCAGTAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCAAGTCCTCAGCTGCCTGAGTTTACTCAGTAGGTCAGTAAACTC  650

seq1  GATGGATCCCACTGACTCTACCTCCCTAGCAGTAGGATTACAAGTGCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCCCACTGACTCTACCTCCCTAGCAGTAGGATTACAAGTGCCCT  700

seq1  CTGCCTTCGTGGGACCTGGGGAACCGAATTCATGTCCTTATGACAGAAAG  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGCCTTCGTGGGACCTGTGGAACCGAATTCATGTCCTTATGACAGAAAG  750

seq1  GCAGGCACTTGTCAACTGAGGGCCACCTCCCCAACCCTAGCCATTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACTTGTCAACTGAGGGCCACCTCCCCAACCCTAGCCATTCTCCA  800

seq1  CAAATACAGTCCTTGGCCCCAGTATCCCACAACTGGGAAGAGACTGTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGTCCTTGGCCCCAGTATCCCACAACTGGGAAGAGACTGTTAC  850

seq1  CATTTAATCACAGCTGCTGAGTTCTGCATCCCTGGGAAGAGTCACACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATCACAGCTGCTGAGTTCTGCATCCCTGGGAAGAGTCACACTTG  900

seq1  CACAGTGAGGACCCACAATGAACACAGTCATTAGCATGCTGTGTATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAGTGAGGACCCACAATGAACACAGTCATTAGCATGCTGTGTA-TATT  949

seq1  CTGCTGCTTTCAAACTATATTTTGTTAAAATGCCAAAAGTAACTGACTGA  1000
      |||||||||||||||||||||||||| ||||||| ||||| |||||||||
seq2  CTGCTGCTTTCAAACTATATTTTGTT-AAATGCC-AAAGT-ACTGACTGA  996

seq1  GCCAGAAGCCTGAAAAGCAAGCAGGGAGTGAGGAGCCTCCCTTGTCTTGC  1050
      | |||||||||| ||||| |||| ||||||||||||||||||||||||||
seq2  G-CAGAAGCCTG-AAAGC-AGCA-GGAGTGAGGAGCCTCCCTTGTCTTGC  1042

seq1  TCGTGGGGATGAGGAGGG-ATGT-GGTGTGTGTGAG  1084
      |||||||||||||||||| |||| ||||||||||  
seq2  TCGTGGGGATGAGGAGGGAATGTGGGTGTGTGTG--  1076

seq1: chr4_139563712_139563965
seq2: B6Ng01-168J14.g_73_326 (reverse)

seq1  CCCCTTCTTCCCCCTCCCTCTCTTCAGGAGCCCTGAACTGGCCTTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTCCCCCTCCCTCTCTTCAGGAGCCCTGAACTGGCCTTCTGCC  50

seq1  CCACTCTCAAGACCTTCTCTGACTCTTTTCCTGAGCACAGAGCCTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCAAGACCTTCTCTGACTCTTTTCCTGAGCACAGAGCCTCAGGA  100

seq1  TTGCTCTACCTCCGCCCCGTCGCTTCTCACTGAAGTCTAATGCACTCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTACCTCCGCCCCGTCGCTTCTCACTGAAGTCTAATGCACTCACG  150

seq1  GGAGAGTGAATCTGCCATTTTTTTGTTTCTAATCTTAACATTTATTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGAATCTGCCATTTTTTTGTTTCTAATCTTAACATTTATTTCAA  200

seq1  TCCACCCTGGACTAGAAACATGACAAAAGGAAAAAAGTAAAAAGAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTGGACTAGAAACATGACAAAAGGAAAAAAGTAAAAAGAATCTG  250

seq1  AAAA  254
      ||||
seq2  AAAA  254