BAC Information

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BAC

Clone NameB6Ng01-168J17
Chromosome4 (Build37)4 (Build37)
Map Location 147,049,291 - 147,050,182145,029,921 - 145,030,783
singlet/doubletsingletsinglet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J17.bB6Ng01-168J17.g
ACCDH959801DH959802
length1,133856
definitionDH959801|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J17, 5' end.DH959802|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,049,291 - 147,050,182)(145,029,921 - 145,030,783)
sequence
gaattctctgatgaattctcagactgcttttttcagtaaagcatttgcca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
actaagattggattgttgggtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaatactaagatgggattgt
tgggtaaagcatttgtcacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaattctcagactgcttttttcagtaaagcatttgc
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
atactaagataggattcttgggtaaagcatttgtcacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgaatactaagattggatt
gtttggtaaagcatttgtcacattcactgcatttgtaaggtttctctcct
gtatgaattctctgatgcatagtaagattgaatttgtttttaaaacattt
gtcacattcactacatttgtaaattttctcttctgtatgaatttcctgat
gaatactaagatggatctgatgggtaaagcatttgtcacttttactactt
ttgtaaggtttctttccatgataaattctctgctgactttgtaggttttc
tctctgggtaagatatttgtgaaattcactacatttgtaagggttccctg
caatattgtcttttttcaccatgactttatgtttagaaacaaaaatcttg
tctaattctgcatttcggttgtgttttttcttctgcatgttaattccttg
attgagactaatggtagaaaacaaacttaaactgtttacagagtcattgt
atttgcaaacttctttagtgttcctgggcttaagtctttttggttcgaga
attgaagagcatcagagctgtgattagttttgtaagtgtacactgtagga
ttcagaatgacattgctaagcttgtccaattagaagacttctctgatatc
atgtgttcatgacaatgtactggctgtctgatccataacttccaatcttc
acgctatgcaatgattttctgaaaaagggggca
gaattcctgtgattggtcctcttaatgtcatttgaccacattgaatggtg
ttcagagtctattttgacttctgtctcttgagtttgtttcataattcatt
ttgtcatgagtattgctattatattagtgatttgggtagggaaattttat
taacattatgaaattgctttagctacagcctctcaattttcttttcttgt
gtgtcatttaggtcaggtgacagggatttccatatgaggtgttgtgaata
aactttgagaatctaggttggtgggcaggaactaggttacaggtacactc
taaatatatcattacttgctttcgtggctgtacaaatgttgtctagattc
ctggtatcatttgcatttaattttttaaaaatatgctttagcattgtctg
tagtgtagttgtatttatttcatctttgaatcgttcaattcttttttttc
cttttttaatatttttattaggtattttcctcatttacatttccaatgct
atcccaaaagtcccccataccctcccccccacttccctacccacccactc
ccactttttggccctggcgttcacttgtactggggcatataaagtttgca
tgaccaatgggactctctttccagtgatggccaactaggccatcttttga
tacatatgtaactagagacaataactcctgggtactggttagttcatatt
gttgttccacctatagggttgcagttccctttagctccttgggtatttct
ccagctcttccattggggagccttgtgatccatcaaatacttgactggga
gcttccattttgtgtttgctagcccggatagtctcacaagaaacagctat
atcacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147049291_147050182
seq2: B6Ng01-168J17.b_305_1178

seq1  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50

seq1  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACTAAGA  100

seq1  CTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTGCATTTGTAAGGTTT  150
        |  || ||  |||||||||||| |||||||||||||||||||||||||
seq2  TAGGATTCTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTT  150

seq1  CTCTCCTGTATGAATTCTCTGATGAATTCTCAGACTGGTTTTATCAGTAA  200
      ||||||||||||||||||||||||||| || ||| ||| ||  |  ||||
seq2  CTCTCCTGTATGAATTCTCTGATGAATACTAAGATTGGATTGTTTGGTAA  200

seq1  AGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATT  250
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT  250

seq1  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300

seq1  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTTCCTGATGAATACTAA  350

seq1  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGT  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTTGTAAGGT  400

seq1  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGT  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGGTTTTCTCTCTGGGT  450

seq1  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500

seq1  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCT  550

seq1  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACT  600

seq1  AATGGTAGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAA  650

seq1  CTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGA  700
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CTTCTTTAGTGTTCCTGGGCTTAAGTC-TTTTTGGTTCGAGAATTGAAGA  699

seq1  GCATCAGAGCTGTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAG  750
      ||||||||||||||||||||||||||| |||||||||| | |||||| ||
seq2  GCATCAGAGCTGTGATTAGTTTTGTAA-GTGTACACTGTA-GGATTC-AG  746

seq1  AATGACATTGCTAAGCTTGTCCCATTTAGAAGACTTCTCTTGAATATTCA  800
      |||||||||||||||||||| ||| |||||||||||||||   ||| |||
seq2  AATGACATTGCTAAGCTTGT-CCAATTAGAAGACTTCTCT--GATA-TCA  792

seq1  TGTGTTCATGGACAATGTACTGGCTGTCTTGATCCAATACCTTCCCATTC  850
      ||||||||| |||||||||||||||||| |||||| ||| ||| ||| ||
seq2  TGTGTTCAT-GACAATGTACTGGCTGTC-TGATCC-ATAACTT-CCAATC  838

seq1  TTTCCACG-TATGCAATGATTTTCTGAAAAAAAAGGGGGGGCA  892
      ||  |||| ||||||||||||||||||||||     |||||||
seq2  TT--CACGCTATGCAATGATTTTCTGAAAAA-----GGGGGCA  874

seq1: chr4_145029921_145030783
seq2: B6Ng01-168J17.g_67_922

seq1  GAATTCCTGTGATTGGTCCTCTTTATGTCATTTGACCACATTGAATGGTG  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATTCCTGTGATTGGTCCTCTTAATGTCATTTGACCACATTGAATGGTG  50

seq1  TTCAGAGTCTATTTTGACTTCTGTCTCTTGAGTTTGTTTCATAATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCTATTTTGACTTCTGTCTCTTGAGTTTGTTTCATAATTCATT  100

seq1  TTGTCATGAGTATTGCTATTATATTAGTGATTTGGGTAGGGAAATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGAGTATTGCTATTATATTAGTGATTTGGGTAGGGAAATTTTAT  150

seq1  TAACATTATGAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTATGAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTTCTTGT  200

seq1  GTGTCATTTAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTTTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTCATTTAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTGTGAATA  250

seq1  AACTTTGAGAATCTAGGTTGGTGGGCAGGAACTAGGTTACAGGTACACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAGAATCTAGGTTGGTGGGCAGGAACTAGGTTACAGGTACACTC  300

seq1  TAAATATATCATTACTTGCTTTCGTGGCTGTACAAATGTTTTCTAGATTC  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAATATATCATTACTTGCTTTCGTGGCTGTACAAATGTTGTCTAGATTC  350

seq1  CTGGTATCATTTTGCATTTAATTTTTTTAAAATATGCTTTAGCATTGTCT  400
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGTATCA-TTTGCATTTAATTTTTTAAAAATATGCTTTAGCATTGTCT  399

seq1  GTAGTGTAGTTGTATTTATTTCATCTTTGAATCGTTCAATTCTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTAGTTGTATTTATTTCATCTTTGAATCGTTCAATTCTTTTTTTT  449

seq1  CCTTTTTTAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGC  499

seq1  TATCCCAAAAGTCCCCCATACCCTCCCCCCCCCACTTCCCTACCCACCCA  550
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TATCCCAAAAGTCCCCCATACCCT--CCCCCCCACTTCCCTACCCACCCA  547

seq1  CTCCCACTTTTTGGCCCTGGCGTTCACTTGTACTGGGGCATATAAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTTTTGGCCCTGGCGTTCACTTGTACTGGGGCATATAAAGTTT  597

seq1  GCATGACCAATGGGACTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCAATGGGACTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTT  647

seq1  TGATACATATGTAGCTAGAGACAAGAGCTCCTGGGTACTGGTTAGTTCAT  700
      ||||||||||||| |||||||||| | |||||||||||||||||||||||
seq2  TGATACATATGTAACTAGAGACAATAACTCCTGGGTACTGGTTAGTTCAT  697

seq1  ATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACT  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTA-T  746

seq1  TTCTCTAGCTCCTACATTGGGG-GCCTTGTGATCCATCCAATAGCTGACT  799
      ||||| ||||| | |||||||| ||||||||||||||| ||||  |||||
seq2  TTCTCCAGCTCTTCCATTGGGGAGCCTTGTGATCCATCAAATACTTGACT  796

seq1  GTGAGCATCCATTTCTGTGTTTGCTAGGCCCAGGCATTGTCTCACAAGAG  849
      | |||| ||||||| |||||||||||| ||   | || ||||||||||| 
seq2  GGGAGCTTCCATTT-TGTGTTTGCTAGCCC---GGATAGTCTCACAAGAA  842

seq1  ACAGCTATATCAGG  863
      |||||||||||| |
seq2  ACAGCTATATCACG  856