BAC Information

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BAC

Clone NameB6Ng01-168N04
Chromosome4 (Build37)
Map Location 10,348,582 - 10,521,376
singlet/doubletdoublet
Overlap geneLOC666840
Upstream gene4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N04.bB6Ng01-168N04.g
ACCDH959963DH959964
length1,116969
definitionDH959963|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N04, 5' end.DH959964|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,348,582 - 10,349,711)(10,520,826 - 10,521,376)
sequence
gaattcttcctatgtgcctcctaaaggagggatttgttaatatagagctg
tattttagcctttaagctgtgctgtgtagtttgggcatacagaatagaaa
ataataaattgttctggctgtcttcaagagaaaacatagagccctcttgt
ggtagaattactacactcacaattaaactctacaacataagccttttgct
gatacaatgacaaaatcctagacatttcatatccagaagctcttaatctt
caaatggaccttcctttaaatgaggataaacttttccttatatagatcca
gccacgtgagggaagcaaggtttcctggcaagagttctgaagttaataaa
tttttacccaagacatagcatgttctaagttacatcaaaataaacttgaa
gttagaatcattctgattgtttttggccacctcaaacagaaaatgatttt
cagcatcaaaaagtttgcaagcattgtagcttatttgggaaagtggctgc
acactatacccaacattgaaatctcttcattatcaggtgattattttctt
gtaccattccatttaagcatgtatcttataagtttcaagggcaatgttga
aataaatgtgaaatctcatctattttctagaaatctatcttttgaacaat
aagtcaaattggctttggtcactgatgaatagagaaaaatctcctattga
tccccttatttatccagcattgcactacagaaaaaccaaaacccacagat
gccaggaacatattccttaccagccacagaccaacctcctacataactga
ggcagtaaagaaagcaacaattccctgcctacagcttgagagttttcctt
ctagtttttaagcgggttttgtttaaagatcatgggtttcccccagtccc
agctgagaggcactcctttctgaaagaatgaatttgcttcaatatactgt
gggaaaacattacttaagtgataggcaggtcataagtaggttagacacat
atattttatgactccacatagcaaactttacttagcatgagtgggtgatt
tcttaagctcacactggataagtctgctgctaagcatctctctcttcggt
ttcatcaccactgtat
gaattccaaattggtaaataggttacctgcactcagagatccttcatatt
cttgcgtctccccttccactcctccctcccataccatctatgaccctaac
tccccactttttttctaatcaccatgtctagcattgaacttaggcagaga
acacctgcttgagcaaataccacaccagtcaaaccactaaaagtccaggt
aggctgctttcctatagacctcctccattctcagtgtctttgtaccagga
cactatacccaatctttccttcctgccttcttgccatgtcccagccccta
aaccaaatagaaaccacatgattgtcaagagatgagaccagctgcctgag
gtcctgcccctaacttgggcagagagcccacacaggccagaaaactagag
aggaaacagaatctaaggaacagcagcggcagcaacaacaacatcagcaa
caacaaaaccattcaacaaagacaacctcagaagtggtcaagtagaaata
taatcagttgtgctaggcagtggtagagtggtggcacatgcctttaattc
cagcacttgggaggcagaggtaggcagatttctgagttcaaggccagcct
ggtctagagagtgagttccaggacagccatggctatagagagaaaccctg
cctcaaatatatgtatatatgtatatgtataatgaatatatatattcatt
caaaccgagatgcccagctaacagtgtaagatcacaaagaacaacagaca
ggacaatatattaccaccagagcctagctatcctactacagcaagctctg
aatattccaacaagcttgggcacaagaaaaaatccttaaaatcaacttta
tggagataatagaggtccttaaagaagaagtgaataaatcccttaatgaa
attgaggaaagagaaacagaaaattggaggagtgaataaattccttaaga
aacaacacataaagaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10348582_10349711
seq2: B6Ng01-168N04.b_48_1163

seq1  GAATTCTTCCTATGTGCCTCCTAAAGGAGGGATTTGTTAATATAGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTATGTGCCTCCTAAAGGAGGGATTTGTTAATATAGAGCTG  50

seq1  TATTTTAGCCTTTAAGCTGTGCTGTGTAGTTTGGGCATACAGAATAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCCTTTAAGCTGTGCTGTGTAGTTTGGGCATACAGAATAGAAA  100

seq1  ATAATAAATTGTTCTGGCTGTCTTCAAGAGAAAACATAGAGCCCTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATTGTTCTGGCTGTCTTCAAGAGAAAACATAGAGCCCTCTTGT  150

seq1  GGTAGAATTACTACACTCACAATTAAACTCTACAACATAAGCCTTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTACTACACTCACAATTAAACTCTACAACATAAGCCTTTTGCT  200

seq1  GATACAATGACAAAATCCTAGACATTTCATATCCAGAAGCTCTTAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATGACAAAATCCTAGACATTTCATATCCAGAAGCTCTTAATCTT  250

seq1  CAAATGGACCTTCCTTTAAATGAGGATAAACTTTTCCTTATATAGATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACCTTCCTTTAAATGAGGATAAACTTTTCCTTATATAGATCCA  300

seq1  GCCACGTGAGGGAAGCAAGGTTTCCTGGCAAGAGTTCTGAAGTTAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGAGGGAAGCAAGGTTTCCTGGCAAGAGTTCTGAAGTTAATAAA  350

seq1  TTTTTACCCAAGACATAGCATGTTCTAAGTTACATCAAAATAAACTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCCAAGACATAGCATGTTCTAAGTTACATCAAAATAAACTTGAA  400

seq1  GTTAGAATCATTCTGATTGTTTTTGGCCACCTCAAACAGAAAATGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATCATTCTGATTGTTTTTGGCCACCTCAAACAGAAAATGATTTT  450

seq1  CAGCATCAAAAAGTTTGCAAGCATTGTAGCTTATTTGGGAAAGTGGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAAAAAGTTTGCAAGCATTGTAGCTTATTTGGGAAAGTGGCTGC  500

seq1  ACACTATACCCAACATTGAAATCTCTTCATTATCAGGTGATTATTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATACCCAACATTGAAATCTCTTCATTATCAGGTGATTATTTTCTT  550

seq1  GTACCATTCCATTTAAGCATGTATCTTATAAGTTTCAAGGGCAATGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTCCATTTAAGCATGTATCTTATAAGTTTCAAGGGCAATGTTGA  600

seq1  AATAAATGTGAAATCTCATCTACTTTCTAGAAATCTATCTTTTGAACAAT  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATAAATGTGAAATCTCATCTATTTTCTAGAAATCTATCTTTTGAACAAT  650

seq1  AAGTCAAATTGGCTTTGGTCACTGATGAATAGAGAAAAATCTCCTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAATTGGCTTTGGTCACTGATGAATAGAGAAAAATCTCCTATTGA  700

seq1  TCCCCTTATTTATCCAGCATTGCACTACAGAAAAACCAAAACCCACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTATTTATCCAGCATTGCACTACAGAAAAACCAAAACCCACAGAT  750

seq1  GCCAGGAACATATTCCTTACCAGCCACAGACCAACCTCCTACATAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAACATATTCCTTACCAGCCACAGACCAACCTCCTACATAACTGA  800

seq1  GGCAGTAAAGAAAGCAACAATTCCCTGCCTACAGCTTGAGAGTTTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAAGAAAGCAACAATTCCCTGCCTACAGCTTGAGAGTTTTCCTT  850

seq1  CTAGTTTTTAAGCGGGTTTTGTTTAAAGATCATGGGTTTCCCCCAGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTTAAGCGGGTTTTGTTTAAAGATCATGGGTTTCCCCCAGTCCC  900

seq1  AGCTGAGAGGCACTCCTTTCTGAAAGAATGAATTTGCTTCAAATATACTG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCTGAGAGGCACTCCTTTCTGAAAGAATGAATTTGCTTC-AATATACTG  949

seq1  TGGGAAAACATTACTTAAGTGATAGGCAAGGTCATAAGTAGGTTAGACAC  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGAAAACATTACTTAAGTGATAGGC-AGGTCATAAGTAGGTTAGACAC  998

seq1  ATATATTTTATGACTCCCAACATAAGCAAACTTTACCTAGCCATGAGTGG  1050
      |||||||||||||||||  |||| |||||||||||| ||| |||||||||
seq2  ATATATTTTATGACTCC--ACAT-AGCAAACTTTACTTAG-CATGAGTGG  1044

seq1  GTGATTTTCTTAAGGCTCACACTGGATAGTTCTGCTGCTAAAGCCATCTC  1100
      |||| |||||||| ||||||||||||||  |||||||||||   ||||||
seq2  GTGA-TTTCTTAA-GCTCACACTGGATAAGTCTGCTGCTAA--GCATCTC  1090

seq1  TCCTCTTCGGTTTCAATCACACAACTGTAT  1130
      | |||||||||||||    ||| |||||||
seq2  T-CTCTTCGGTTTCA---TCACCACTGTAT  1116

seq1: chr4_10520826_10521376
seq2: B6Ng01-168N04.g_69_619 (reverse)

seq1  GGAATTAAAGGCATGTGCCACCACTCTACCACTGCCTAGCACAACTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAAGGCATGTGCCACCACTCTACCACTGCCTAGCACAACTGATT  50

seq1  ATATTTCTACTTGACCACTTCTGAGGTTGTCTTTGTTGAATGGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTACTTGACCACTTCTGAGGTTGTCTTTGTTGAATGGTTTTGTT  100

seq1  GTTGCTGATGTTGTTGTTGCTGCCGCTGCTGTTCCTTAGATTCTGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGATGTTGTTGTTGCTGCCGCTGCTGTTCCTTAGATTCTGTTTCC  150

seq1  TCTCTAGTTTTCTGGCCTGTGTGGGCTCTCTGCCCAAGTTAGGGGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTTTCTGGCCTGTGTGGGCTCTCTGCCCAAGTTAGGGGCAGGA  200

seq1  CCTCAGGCAGCTGGTCTCATCTCTTGACAATCATGTGGTTTCTATTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCAGCTGGTCTCATCTCTTGACAATCATGTGGTTTCTATTTGGT  250

seq1  TTAGGGGCTGGGACATGGCAAGAAGGCAGGAAGGAAAGATTGGGTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTGGGACATGGCAAGAAGGCAGGAAGGAAAGATTGGGTATAGT  300

seq1  GTCCTGGTACAAAGACACTGAGAATGGAGGAGGTCTATAGGAAAGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTACAAAGACACTGAGAATGGAGGAGGTCTATAGGAAAGCAGCC  350

seq1  TACCTGGACTTTTAGTGGTTTGACTGGTGTGGTATTTGCTCAAGCAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGACTTTTAGTGGTTTGACTGGTGTGGTATTTGCTCAAGCAGGTG  400

seq1  TTCTCTGCCTAAGTTCAATGCTAGACATGGTGATTAGAAAAAAAGTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCTAAGTTCAATGCTAGACATGGTGATTAGAAAAAAAGTGGGG  450

seq1  AGTTAGGGTCATAGATGGTATGGGAGGGAGGAGTGGAAGGGGAGACGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGTCATAGATGGTATGGGAGGGAGGAGTGGAAGGGGAGACGCAA  500

seq1  GAATATGAAGGATCTCTGAGTGCAGGTAACCTATTTACCAATTTGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAAGGATCTCTGAGTGCAGGTAACCTATTTACCAATTTGGAATT  550

seq1  C  551
      |
seq2  C  551