BAC Information

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BAC

Clone NameB6Ng01-168O01
Chromosome4 (Build37)
Map Location 87,529,955 - 87,635,757
singlet/doubletdoublet
Overlap geneMllt3
Upstream geneAsah3l, Slc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O01.bB6Ng01-168O01.g
ACCDH960003DH960004
length5911,107
definitionDH960003|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O01, 5' end.DH960004|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,529,955 - 87,530,551)(87,634,641 - 87,635,757)
sequence
accacatgaatctgcctgtcttggaacgcactacatagtgcaggctggac
acaaactcactgagatccacctgcctttgcatcacaagggctggaattaa
gagtgtgtgccacaaagtttctcacaggcccggagctcatagattaaggt
taagacagctaatacaacaaaccccaccgatcttcctatctccccttacc
aatagctggcatttcaagaacacaactatgtgccaggcttttaacattgg
ttctagagatcaaatgtaggtactcgtgcttgaataataaacattttggc
agggctatctccctagccaaaaacattttagatataacggacataaggaa
aaaaaaagcaatataaatatatagttcctttcctcattctagcatgttac
aatcctaaacagaagaactcgaagaagcagaactagacttgaagatatgc
agccagtgggaatagtatttttctaaaacagctcttcaaaacagtagata
cgtaattggttgatatcccagggaggcctgctcttttctgaagggaaaga
gaggagcagtggatcttggggagggtagaagtggggaggag
gaattcccttttcaaatgataagaatataaagactctctctttccctccc
tccctccctccctcccttccttccttctttgtatctagattcctatttga
aagcattgactgctctgatatattttagcagggagggatttgataaaggg
gattaggtgcttaatatatcttgaaggggcagaaagggcaggctgtgggc
tgactttctaggaatgataccaagagtaaaatcgcagagctggccagtca
agggaactgcagtctctgctgtgagaggctacctcagcagccaagcagct
gttgagggtctgtagtctgtttgctggctccttggtgtgcctggactcta
tacctttgaagttgagcactgactgacagtaccacagtgctaggagctca
cccgaacacaggatttacctttagctttcggatctttcctagttgtctga
cttgtagctgtccttcagttcactgaagggacaggatatgttttacaaac
aagtctgcagccagtgcctacctggttagtgttttggtgaatcgctgctg
cctccagagttgtaattttgctgtttggtttggtttggtttggtttttca
tgtttctctgtagtagaccaggctggcctcaaactcacagaaatatgatg
gtctctgccaccagagtaatgggactaaaggtgtgcgtgccatcttgcct
ggctctcagggcatgagtattaataggcgggttttacttgattgaaagtt
ctgtgaactgagatggcactttgaaatgaaatctatgttttcttctctgc
gggatttttttttttccttttcttctctttccaggtcagagtctctggaa
agataagaacaaattaataatattcctgaatctaacttgatgacatcacg
gtttgaaaggaccggagagttcagttccacaaatgcagcctgtcagcgtg
gttctcttgtgagtagtgtttcatctcttaattgacgctttcgtgctatg
gaatgtcgaataccttcagctaagaaggaagtattgttctctgttttccc
tgggttactactagccgaatctagggataagccattgcaaagaacgtgtg
ctgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87529955_87530551
seq2: B6Ng01-168O01.b_46_642

seq1  GAATTCACCACATGAATCTGCCTGTCTTGGAACGCACTACATAGTGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACATGAATCTGCCTGTCTTGGAACGCACTACATAGTGCAGG  50

seq1  CTGGACACAAACTCACTGAGATCCACCTGCCTTTGCATCACAAGGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACAAACTCACTGAGATCCACCTGCCTTTGCATCACAAGGGCTGG  100

seq1  AATTAAGAGTGTGTGCCACAAAGTTTCTCACAGGCCCGGAGCTCATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAGTGTGTGCCACAAAGTTTCTCACAGGCCCGGAGCTCATAGAT  150

seq1  TAAGGTTAAGACAGCTAATACAACAAACCCCACCGATCTTCCTATCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTAAGACAGCTAATACAACAAACCCCACCGATCTTCCTATCTCCC  200

seq1  CTTACCAATAGCTGGCATTTCAAGAACACAACTATGTGCCAGGCTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAATAGCTGGCATTTCAAGAACACAACTATGTGCCAGGCTTTTAA  250

seq1  CATTGGTTCTAGAGATCAAATGTAGGTACTCGTGCTTGAATAATAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTCTAGAGATCAAATGTAGGTACTCGTGCTTGAATAATAAACAT  300

seq1  TTTGGCAGGGCTATCTCCCTAGCCAAAAACATTTTAGATATAACGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGGGCTATCTCCCTAGCCAAAAACATTTTAGATATAACGGACAT  350

seq1  AAGGAAAAAAAAAGCAATATAAATATATAGTTCCTTTCCTCATTCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAAGCAATATAAATATATAGTTCCTTTCCTCATTCTAGCA  400

seq1  TGTTACAATCCTAAACAGAAGAACTCGAAGAAGCAGAACTAGACTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAATCCTAAACAGAAGAACTCGAAGAAGCAGAACTAGACTTGAAG  450

seq1  ATATGCAGCCAGTGGGAATAGTATTTTTCTAAAACAGCTCTTCAAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCCAGTGGGAATAGTATTTTTCTAAAACAGCTCTTCAAAACAG  500

seq1  TAGATACGTAATTGGTTGATATCCCAGGGAGGCCTGCTCTTTTCTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACGTAATTGGTTGATATCCCAGGGAGGCCTGCTCTTTTCTGAAGG  550

seq1  GAAAGAGAGGAGCAGTGGATCTTGGGGAGGGTAGAAGTGGGGAGGAG  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGAGCAGTGGATCTTGGGGAGGGTAGAAGTGGGGAGGAG  597

seq1: chr4_87634641_87635757
seq2: B6Ng01-168O01.g_69_1175 (reverse)

seq1  AGAACAGCACATCGTTCTTTGCAATGGCTTATCCCTAGATCTGGCTAGTT  50
      ||||||||||| ||||||||||||||||||||||||||||  |||||| |
seq2  AGAACAGCACA-CGTTCTTTGCAATGGCTTATCCCTAGATTCGGCTAG-T  48

seq1  AGTAACCCAGGGAAAACAGGAGAAACAATTAACCTTCCCTTCCTTTAGCT  100
      |||||||||||||||||| ||| ||||||  ||  | |||||  ||||||
seq2  AGTAACCCAGGGAAAACA-GAG-AACAAT--AC--TTCCTTC--TTAGCT  90

seq1  GAGGGTA-TCGACATTCCATAGCACGAAAGCGTCAATTAAGAGATGAAAA  149
      || |||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGGTATTCGACATTCCATAGCACGAAAGCGTCAATTAAGAGATG-AAA  139

seq1  CACTAACTCAACAAGAGGAACAACGCTGACAGGCTGCATTTGTGGAACTG  199
      |||| |||| |||||| |||| ||||||||||||||||||||||||||||
seq2  CACT-ACTC-ACAAGA-GAACCACGCTGACAGGCTGCATTTGTGGAACTG  186

seq1  AACTCTCCGGT-CTTTCAAACCGTGATGTCATCAAGTTAGATTCAGGAAT  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCGGTCCTTTCAAACCGTGATGTCATCAAGTTAGATTCAGGAAT  236

seq1  ATTA-TAATTTGTTCTTATCTTTCCAGAGACTCTGACCTGGAAAGAGAAG  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATTTGTTCTTATCTTTCCAGAGACTCTGACCTGGAAAGAGAAG  286

seq1  AAAAGGAAAAAAAAAAATCCCGCAGAGAAGAAAACATAGATTTCATTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAAAAAAAATCCCGCAGAGAAGAAAACATAGATTTCATTTCA  336

seq1  AAGTGCCATCTCAGTTCACAGAACTTTCAATCAAGT-AAACCCGCCTATT  396
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTGCCATCTCAGTTCACAGAACTTTCAATCAAGTAAAACCCGCCTATT  386

seq1  AATACTCATGCCCTGAGAGCCAGGCAAGATGGCACGCACACCTTTAGTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCATGCCCTGAGAGCCAGGCAAGATGGCACGCACACCTTTAGTCC  436

seq1  CATTACTCTGGTGGCAGAGACCATCATATTTCTGTGAGTTTGAGGCCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCTGGTGGCAGAGACCATCATATTTCTGTGAGTTTGAGGCCAGC  486

seq1  CTGGTCTACTACAGAGAAACATGAAAAACCAAACCAAACCAAACCAAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACTACAGAGAAACATGAAAAACCAAACCAAACCAAACCAAACA  536

seq1  GCAAAATTACAACTCTGGAGGCAGCAGCGATTCACCAAAACACTAACCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTACAACTCTGGAGGCAGCAGCGATTCACCAAAACACTAACCAG  586

seq1  GTAGGCACTGGCTGCAGACTTGTTTGTAAAACATATCCTGTCCCTTCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCACTGGCTGCAGACTTGTTTGTAAAACATATCCTGTCCCTTCAGT  636

seq1  GAACTGAAGGACAGCTACAAGTCAGACAACTAGGAAAGATCCGAAAGCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGGACAGCTACAAGTCAGACAACTAGGAAAGATCCGAAAGCTA  686

seq1  AAGGTAAATCCTGTGTTCGGGTGAGCTCCTAGCACTGTGGTACTGTCAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATCCTGTGTTCGGGTGAGCTCCTAGCACTGTGGTACTGTCAGT  736

seq1  CAGTGCTCAACTTCAAAGGTATAGAGTCCAGGCACACCAAGGAGCCAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAACTTCAAAGGTATAGAGTCCAGGCACACCAAGGAGCCAGCA  786

seq1  AACAGACTACAGACCCTCAACAGCTGCTTGGCTGCTGAGGTAGCCTCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTACAGACCCTCAACAGCTGCTTGGCTGCTGAGGTAGCCTCTCA  836

seq1  CAGCAGAGACTGCAGTTCCCTTGACTGGCCAGCTCTGCGATTTTACTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGACTGCAGTTCCCTTGACTGGCCAGCTCTGCGATTTTACTCTT  886

seq1  GGTATCATTCCTAGAAAGTCAGCCCACAGCCTGCCCTTTCTGCCCCTTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCATTCCTAGAAAGTCAGCCCACAGCCTGCCCTTTCTGCCCCTTCA  936

seq1  AGATATATTAAGCACCTAATCCCCTTTATCAAATCCCTCCCTGCTAAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTAAGCACCTAATCCCCTTTATCAAATCCCTCCCTGCTAAAAT  986

seq1  ATATCAGAGCAGTCAATGCTTTCAAATAGGAATCTAGATACAAAGAAGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAGCAGTCAATGCTTTCAAATAGGAATCTAGATACAAAGAAGGA  1036

seq1  AGGAAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAGAGTCTTTATATTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAGAGTCTTTATATTCT  1086

seq1  TATCATTTGAAAAGGGAATTC  1117
      |||||||||||||||||||||
seq2  TATCATTTGAAAAGGGAATTC  1107