BAC Information

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BAC

Clone NameB6Ng01-168O10
Chromosome4 (Build37)
Map Location 6,200,887 - 6,345,519
singlet/doubletdoublet
Overlap geneCyp7a1, Sdcbp, Nsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168O10.bB6Ng01-168O10.g
ACCDH960019DH960020
length1,0961,083
definitionDH960019|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O10, 5' end.DH960020|Mus musculus domesticus DNA, BAC clone: B6Ng01-168O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,344,412 - 6,345,519)(6,200,887 - 6,201,983)
sequence
gaattctatgatgaagacgtcagctttttggtcaatagtctgaagctgga
tctgggaaagagacaaggcgggcagatggttgatgacgtggaccttccag
cctgggcctcaagtgagcctcctgagcgtgccaagtgcagtgcggttgtg
ctgttatctgttgtggggtggtgcttgggagttttaaatattcctacctc
atttaactagaatctgtctatcccagccagaagtgtgctgagtctacatt
gcaaggagattgatatatatttgacaggtccaaatgttgtaaaaatggtt
cctgccactttttttagaaaaaaaaatatgtaagatgaagaataaaagtc
attagaaatatgtatatctttaaaaggaaaaaaacatagaagtatgcatg
tctttccaagttttatacacacatggataagtataagaaatgaaagaaaa
tacaacaaagatggcctaaaattctgatgacgtctcctctgacaggtccc
caagacttcctgcagaagaacaaggatgccttggaaagcggttacgtgtc
tgagcaccttcatgagtggattgatctgatatttggctataagcaaaaag
ggagtgaggccataggggcccataacggtatgtgatattggctgacattt
cacttactgtcatgtgagaatgtgggcacacaagctggagtcccagacct
caggaggctgaggaagggagagcatgagctcagaaccagtctgggctatg
tccagactctgcaaaccaagtagactctgtgatagaagagtgccagcgat
gcctgtgaagaccaaagcagtctgcctcaccggcctcagcacttactgcc
tcagtttctccgtcaggaacgaggtacttgactgactcaagtgaggtgca
gcactccagtactgtgactcacgcttctctaaaggagaagtaatgctaac
taaggaaggtacagatacagcccagcatggcttccagtacagctttgctc
acacatacagcacgttaacatttacttagtttgaacattaatctgttcac
agatgaaataattctttgaacacagttaagtggctacattctgggc

gaattcaagaggattggatccgaacttcagagcacagcccaggtatggaa
tcaacccgttgtccaaaggaggttcacctactttcctgtaagacgcagat
ttgggaggttgggaaaattacgtgttcagtgttttctagtacttatttca
tatgtagcttcataactacagtttgtagatacttattttggtgatgggga
cccctctcttttactaaaacagtggcttttttagtgtactaagatattgg
tgagggtgattactaaatctatccactcacgaatctatctattaacccat
ccatcagtctatccacctccatatatatatatatacacacacacgtgtgt
gtgtgtgtattcacacattcatcaagaacccaataaattgttttctatgc
ctatgtcctattgcttttcccaatggcagagcttagagtgttaacatagc
caacaagattcttgctctcgaagtatcacctaatgattaaacttttctaa
gaatcatttccctaaatgcctataatgtaacatttgctctttttctttaa
ggatgggaaacatcaaatgacagaaagggctacagtgttaaagttttaac
aatctacagaatttaaaatactagcatcctgaggactggaggtgtggctc
aatggtggagctcttgataacatttataaaaccttccctttgatcctcaa
ctctggaaaaaagaacattattattctgagatgatatttgaagtgaatag
gaatctcatttggaaaattagatcattataaaatgaaattggatcaagta
aacattggcaaaccatgaactaaaatccaatactcttttactctttctta
aatgttttattaaattataagcttatttatttcccaataaatatatattt
agtgtttctactatttatttcagcttcctaactacagttgtagacacttc
tttgatgatggggaccctgcttttttattaaaacagtgggtttttttagc
ctatagatattgtgaagattatcctcttcatctttctagattattgagta
tatggatattctttcttagcatgacgataagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6344412_6345519
seq2: B6Ng01-168O10.b_46_1141 (reverse)

seq1  GCCCAGAATGTAAGCAACTTAAACCTGTGTTCAAAGAAATTATTTTCATC  50
      ||||||||||| ||| ||||||  |||||||||||| ||||| |||||||
seq2  GCCCAGAATGT-AGCCACTTAA--CTGTGTTCAAAG-AATTA-TTTCATC  45

seq1  TGTGAAACAGATTAATGTTCAAACTAAGTAAATGTTAACGTGCTGTTATG  100
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTG-AACAGATTAATGTTCAAACTAAGTAAATGTTAACGTGCTG-TATG  93

seq1  TTGTGAGCAAAGCTGTACTGGAAGCCATGCTGGGCTGTTATCTTGTACCT  150
       |||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  -TGTGAGCAAAGCTGTACTGGAAGCCATGCTGGGCTG-TATC-TGTACCT  140

seq1  TCCTTAGTTAGCATTACCTTCTCCTTTAGAGAAGCGTGAGTCACAGTACT  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTTAGTTAGCATTA-CTTCTCCTTTAGAGAAGCGTGAGTCACAGTACT  189

seq1  GGAGTGCCTGCACCTCACTTGAGTCAGTCAAGTACCTCGTTCCTGACGGA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTG-CTGCACCTCACTTGAGTCAGTCAAGTACCTCGTTCCTGACGGA  238

seq1  GAAACTGAGGCAGTAAGTGCTGAGGCCGGTGAGGCAGACTGCTTTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGGCAGTAAGTGCTGAGGCCGGTGAGGCAGACTGCTTTGGTCT  288

seq1  TCACAGGCATCGCTGGCACTCTTCTATCACAGAGTCTACTTGGTTTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCATCGCTGGCACTCTTCTATCACAGAGTCTACTTGGTTTGCAG  338

seq1  AGTCTGGACATAGCCCAGACTGGTTCTGAGCTCATGCTCTCCCTTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGACATAGCCCAGACTGGTTCTGAGCTCATGCTCTCCCTTCCTCA  388

seq1  GCCTCCTGAGGTCTGGGACTCCAGCTTGTGTGCCCACATTCTCACATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAGGTCTGGGACTCCAGCTTGTGTGCCCACATTCTCACATGAC  438

seq1  AGTAAGTGAAATGTCAGCCAATATCACATACCGTTATGGGCCCCTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGAAATGTCAGCCAATATCACATACCGTTATGGGCCCCTATGGC  488

seq1  CTCACTCCCTTTTTGCTTATAGCCAAATATCAGATCAATCCACTCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCCTTTTTGCTTATAGCCAAATATCAGATCAATCCACTCATGAA  538

seq1  GGTGCTCAGACACGTAACCGCTTTCCAAGGCATCCTTGTTCTTCTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAGACACGTAACCGCTTTCCAAGGCATCCTTGTTCTTCTGCAGG  588

seq1  AAGTCTTGGGGACCTGTCAGAGGAGACGTCATCAGAATTTTAGGCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGGGGACCTGTCAGAGGAGACGTCATCAGAATTTTAGGCCATCT  638

seq1  TTGTTGTATTTTCTTTCATTTCTTATACTTATCCATGTGTGTATAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATTTTCTTTCATTTCTTATACTTATCCATGTGTGTATAAAACT  688

seq1  TGGAAAGACATGCATACTTCTATGTTTTTTTCCTTTTAAAGATATACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACATGCATACTTCTATGTTTTTTTCCTTTTAAAGATATACATA  738

seq1  TTTCTAATGACTTTTATTCTTCATCTTACATATTTTTTTTTCTAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGACTTTTATTCTTCATCTTACATATTTTTTTTTCTAAAAAAA  788

seq1  GTGGCAGGAACCATTTTTACAACATTTGGACCTGTCAAATATATATCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGAACCATTTTTACAACATTTGGACCTGTCAAATATATATCAAT  838

seq1  CTCCTTGCAATGTAGACTCAGCACACTTCTGGCTGGGATAGACAGATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCAATGTAGACTCAGCACACTTCTGGCTGGGATAGACAGATTCT  888

seq1  AGTTAAATGAGGTAGGAATATTTAAAACTCCCAAGCACCACCCCACAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGAGGTAGGAATATTTAAAACTCCCAAGCACCACCCCACAACA  938

seq1  GATAACAGCACAACCGCACTGCACTTGGCACGCTCAGGAGGCTCACTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGCACAACCGCACTGCACTTGGCACGCTCAGGAGGCTCACTTGA  988

seq1  GGCCCAGGCTGGAAGGTCCACGTCATCAACCATCTGCCCGCCTTGTCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGCTGGAAGGTCCACGTCATCAACCATCTGCCCGCCTTGTCTCT  1038

seq1  TTCCCAGATCCAGCTTCAGACTATTGACCAAAAAGCTGACGTCTTCATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATCCAGCTTCAGACTATTGACCAAAAAGCTGACGTCTTCATCA  1088

seq1  TAGAATTC  1108
      ||||||||
seq2  TAGAATTC  1096


seq1: chr4_6200887_6201983
seq2: B6Ng01-168O10.g_68_1150

seq1  GAATTCAAGAGGATTGGATCCGAACTTCAGAGCACAGCCCAGGTATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGGATTGGATCCGAACTTCAGAGCACAGCCCAGGTATGGAA  50

seq1  TCAACCCGTTGTCCAAAGGAGGTTCACCTACTTTCCTGTAAGACGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCGTTGTCCAAAGGAGGTTCACCTACTTTCCTGTAAGACGCAGAT  100

seq1  TTGGGAGGTTGGGAAAATTACGTGTTCAGTGTTTTCTAGTACTTATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGTTGGGAAAATTACGTGTTCAGTGTTTTCTAGTACTTATTTCA  150

seq1  TATGTAGCTTCATAACTACAGTTTGTAGATACTTATTTTGGTGATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTTCATAACTACAGTTTGTAGATACTTATTTTGGTGATGGGGA  200

seq1  CCCCTCTCTTTTACTAAAACAGTGGCTTTTTTAGTGTACTAAGATATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTTTTACTAAAACAGTGGCTTTTTTAGTGTACTAAGATATTGG  250

seq1  TGAGGGTGATTACTAAATCTATCCACTCACGAATCTATCTATTAACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGATTACTAAATCTATCCACTCACGAATCTATCTATTAACCCAT  300

seq1  CCATCAGTCTATCCACCTCCATATATATATATATACACACACACGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCTATCCACCTCCATATATATATATATACACACACACGTGTGT  350

seq1  GTGTGTGTATTCACACATTCATCAAGAACCCAATAAATTGTTTTCTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATTCACACATTCATCAAGAACCCAATAAATTGTTTTCTATGC  400

seq1  CTATGTCCTATTGCTTTTCCCAATGGCAGAGCTTAGAGTGTTAACATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTATTGCTTTTCCCAATGGCAGAGCTTAGAGTGTTAACATAGC  450

seq1  CAACAAGATTCTTGCTCTCGAAGTATCACCTAATGATTAAACTTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATTCTTGCTCTCGAAGTATCACCTAATGATTAAACTTTTCTAA  500

seq1  GAATCATTTCCCTAAATGCCTATAATGTAACATTTGCTCTTTTTCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTCCCTAAATGCCTATAATGTAACATTTGCTCTTTTTCTTTAA  550

seq1  GGATGGGAAACATCAAATGACAGAAAGGGCTACAGTGTTAAAGTTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAACATCAAATGACAGAAAGGGCTACAGTGTTAAAGTTTTAAC  600

seq1  AATCTACAGAATTTAAAATACTAGCATCCTGAGGACTGGAGGTGTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGAATTTAAAATACTAGCATCCTGAGGACTGGAGGTGTGGCTC  650

seq1  AATGGTGGAGCTCTTGATAACATTTATAAAACCTTCCCTTTGATCCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGAGCTCTTGATAACATTTATAAAACCTTCCCTTTGATCCTCAA  700

seq1  CTCTGGAAAAAAGAACATTATTATTCTGAGATGATATTTGAAGTGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAAAAGAACATTATTATTCTGAGATGATATTTGAAGTGAATAG  750

seq1  GAATCTCATTTGGAAAATTAGATCATTATAAAATGAAATTGGATCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATTTGGAAAATTAGATCATTATAAAATGAAATTGGATCAAGTA  800

seq1  AACATTGGCAAACCATGAACTAAAATCCAATACTCTTTTACTCTTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGCAAACCATGAACTAAAATCCAATACTCTTTTACTCTTTCTTA  850

seq1  AATGTTTTATTAAAATTATAAGCTTATTTATTTCCCAATAAATTATATAT  900
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  AATGTTTTATT-AAATTATAAGCTTATTTATTTCCCAATAAA-TATATAT  898

seq1  TTAGTGTTTTCTACTATTTATTTCAAGCTTCCTAACTACAGTTTGTAGAC  950
      |||||| ||||||||||||||||| |||||||||||||||| ||||||||
seq2  TTAGTG-TTTCTACTATTTATTTC-AGCTTCCTAACTACAG-TTGTAGAC  945

seq1  ACTTCTTTTGATGATGGGGACCCTGCTTTTTTATTAAAACAGTGGGTTTT  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTC-TTTGATGATGGGGACCCTGCTTTTTTATTAAAACAGTGGGTTTT  994

seq1  TTTAGCCTATTAAGATATTGGTGAAGAATAT-CTCTTCATCTCTTCTAAG  1049
      ||||||||||  ||||||| ||||||| ||| |||||||||| |||||  
seq2  TTTAGCCTAT--AGATATT-GTGAAGATTATCCTCTTCATCT-TTCTA--  1038

seq1  AATAATTGAGTATAATTGATATTTCCTTTCTTAGCATGACGATAAGCT  1097
       || ||||||||| || ||||||  |||||||||||||||||||||||
seq2  GATTATTGAGTAT-ATGGATATT--CTTTCTTAGCATGACGATAAGCT  1083


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