BAC Information

Click to search

BAC

Clone NameB6Ng01-169A02
Chromosome4 (Build37)
Map Location 66,387,400 - 66,522,302
singlet/doubletdoublet
Overlap geneTlr4
Upstream geneAstn2, LOC667499
Downstream geneLOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A02.bB6Ng01-169A02.g
ACCDH960096DH960097
length1,139855
definitionDH960096|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A02, 5' end.DH960097|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,387,400 - 66,388,548)(66,521,448 - 66,522,302)
sequence
gaattccatatgtatatacatcatgttatgaatacatgtccattctctca
cacacatatgcatatatgcatacacatcatatagtcagagcatattcaaa
gcttaacaaaaaaactatagaactgctaatatgaagatatctctttaata
gaattgtaaattaaaaaaaaacttttccacttctttcactgactaagaca
ttgtaggtagtatatttaattcttagtgatattaatattaaatttactgt
actgtcgaggttttgttacttacacagttttgatactttgtgtcctccaa
gtttcttgttctagagtccacaaagaaagagtgaactaatatttgggatt
gttttggccatgttgttcagttctgctttgttgtgtgaaagcaattgcag
acaacatataaatgaatgtttagtcttcaaatgtttatttgcatacactg
gattttgatttcatgtagtattgagaaattttacttctctttcgagtttt
ttctaacatgggtgattggctaaacagagacagccattaattagcctcaa
accatcatctttatcttttttcaataacacggagttagaattattgtatg
aggatcagcctttcctggcacaattaatccttgttctatttcatgtctct
tatctggtgagcaatggacatagagttttcttcatatcaacccaaattca
tttttttttgtcttcttttcccggactgacattgaaatgacatagcagac
attgctagtgctacttgcttttcttctcatcctttattttccttatggaa
gttttctgacttccagacataaccacttaaattttttctccttgaagtct
tcttttggcttggtgcctcctacttatctctataataccacactggaagt
tctattgaattaataatttctcagtatagctctcagatcatggctggcat
aggtgggtagataaaaccccaagttcatcacttgacagacagtttggata
tgtgtgctccacattgtctccatgtttcacaaagggacttagtcctgtcc
catgtccatttgtacttgagtgctaacctcatcttctgaccaagtatcat
ttatttactttcattggaatactccctggtttcttctga
gaattcctttctctgattttgctagaagtttggtaatgaccagagtgtgc
ctgagcccacacccacctcatcactttcagcttctgcagccatggatatt
gttgtgccatatgccagaaactagagtaaggaaatcagagatagggaatc
ccagtaggagcctgtattcattaaatcagagagctaagataggttacttt
tggctcatggtttcagacttttcactgcatcatagtaggaagagggcagt
caagtagagcagcttacaacaaggctgacaggaaccaataagaaagaatg
caggtgcagtcatccccttaccacatttcttccattttgtcctcaaccta
tgagaacatgctgtgcccattcaggttcattttcctgcttagttgattct
ttctggaagcatttccaaaggagtatacagaacttaaataaccttctagg
cacttctcaatccagtgaactgatggtgaaaatgaaacatcacacagatt
ctttgatgttaaaatataaaagagatagggcttaaaataatatagtagtc
ttttgccatgcctggaatatacagatcactccataaatattgattttcat
tattatatttacctagaaattggatccagaaaaagaaatgcaacttatgt
gaacaaggaaacatatgatttttgggggctggaaatctgagttaggaggt
aaaaaatgtactgctcattcattgggctcaacttcaattctcaaatccca
cattgggcaacgcacttccacagataactcgagtttagagacctgatgct
ctcttctgatcttcatggcacctacactatgtggacctaatcccacatac
gcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66387400_66388548
seq2: B6Ng01-169A02.b_44_1182

seq1  GAATTCCATATGTATATACATCATGTTATGAATACATGTCCATTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTATATACATCATGTTATGAATACATGTCCATTCTCTCA  50

seq1  CACACATATGCATATATGCATACACATCATATAGTCAGAGCATATTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATGCATATATGCATACACATCATATAGTCAGAGCATATTCAAA  100

seq1  GCTTAACAAAAAAACTATAGAACTGCTAATATGAAGATATCTCTTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACAAAAAAACTATAGAACTGCTAATATGAAGATATCTCTTTAATA  150

seq1  GAATTGTAAATTAAAAAAAAACTTTTCCACTTCTTTCACTGACTAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTAAATTAAAAAAAAACTTTTCCACTTCTTTCACTGACTAAGACA  200

seq1  TTGTAGGTAGTATATTTAATTCTTAGTGATATTAATATTAAATTTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTAGTATATTTAATTCTTAGTGATATTAATATTAAATTTACTGT  250

seq1  ACTGTCGAGGTTTTGTTACTTACACAGTTTTGATACTTTGTGTCCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGAGGTTTTGTTACTTACACAGTTTTGATACTTTGTGTCCTCCAA  300

seq1  GTTTCTTGTTCTAGAGTCCACAAAGAAAGAGTGAACTAATATTTGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTTCTAGAGTCCACAAAGAAAGAGTGAACTAATATTTGGGATT  350

seq1  GTTTTGGCCATGTTGTTCAGTTCTGCTTTGTTGTGTGAAAGCAATTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCCATGTTGTTCAGTTCTGCTTTGTTGTGTGAAAGCAATTGCAG  400

seq1  ACAACATATAAATGAATGTTTAGTCTTCAAATGTTTATTTGCATACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATATAAATGAATGTTTAGTCTTCAAATGTTTATTTGCATACACTG  450

seq1  GATTTTGATTTCATGTAGTATTGAGAAATTTTACTTCTCTTTCGAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGATTTCATGTAGTATTGAGAAATTTTACTTCTCTTTCGAGTTTT  500

seq1  TTCTAACATGGGTGATTGGCTAAACAGAGACAGCCATTAATTAGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATGGGTGATTGGCTAAACAGAGACAGCCATTAATTAGCCTCAA  550

seq1  ACCATCATCTTTATCTTTTTTCAATAACACGGAGTTAGAATTATTGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATCTTTATCTTTTTTCAATAACACGGAGTTAGAATTATTGTATG  600

seq1  AGGATCAGCCTTTCCTGGCACAATTAATCCTTGTTCTATTTCATGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGCCTTTCCTGGCACAATTAATCCTTGTTCTATTTCATGTCTCT  650

seq1  TATCTGGTGAGCAATGGACATAGAGTTTTCTTCATATCAACCCAAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTGAGCAATGGACATAGAGTTTTCTTCATATCAACCCAAATTCA  700

seq1  TTTTTTTTTGTCTTCTTTTCCCGGACTGACATTGAAATGACATAGCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTCTTCTTTTCCCGGACTGACATTGAAATGACATAGCAGAC  750

seq1  ATTGCTAGTGCTACTTGCTTTTCTTCTCATCCTTTATTTTCCTTATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGTGCTACTTGCTTTTCTTCTCATCCTTTATTTTCCTTATGGAA  800

seq1  GTTTTCTGACTTCCAGACATAACCACTTAAATTTTTTCTCCTTGAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGACTTCCAGACATAACCACTTAAATTTTTTCTCCTTGAAGTCT  850

seq1  TCTTTTGGCTTGGTGCCTCCTACTTATCTCTTATAATACCACACTGGAAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTTTGGCTTGGTGCCTCCTACTTATCTC-TATAATACCACACTGGAAG  899

seq1  TTCTATTGAATTAATAATCTCTCAGTATAGCTCTCAGATCATGGCTGGCA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTATTGAATTAATAATTTCTCAGTATAGCTCTCAGATCATGGCTGGCA  949

seq1  TAAGTTGGTAGATAAAAACCCCAAGTTCATCACTTGACAGACAGTTTGGA  1000
      || || ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTAGAT-AAAACCCCAAGTTCATCACTTGACAGACAGTTTGGA  998

seq1  TATGTGTGCTCCACATTGTCTCCATGGTTTCACAAAGGGACTTAGTCCTG  1050
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATGTGTGCTCCACATTGTCTCCAT-GTTTCACAAAGGGACTTAGTCCTG  1047

seq1  TCCCATGTCCATTTGTAACTTGAGTGCTAA-CTCATCCTTCTGACACAAG  1099
      |||||||||||||||| ||||||||||||| ||||| |||||||| ||||
seq2  TCCCATGTCCATTTGT-ACTTGAGTGCTAACCTCAT-CTTCTGAC-CAAG  1094

seq1  TATCATTTATTTACCTTTCTATTGGGATTACTTCCCTGGTTTTCTTCTGA  1149
      ||||||||||||| ||||| ||| ||| ||| ||||||| ||||||||||
seq2  TATCATTTATTTA-CTTTC-ATT-GGAATAC-TCCCTGG-TTTCTTCTGA  1139

seq1: chr4_66521448_66522302
seq2: B6Ng01-169A02.g_69_923 (reverse)

seq1  TATGTGTATGTGGGGTTAGGTCCACATGAGTGTAGGTGCCCATGAAGATC  50
      |||| ||||||||| |||||||||||| |||||||||| |||||||||||
seq2  TATGCGTATGTGGGATTAGGTCCACAT-AGTGTAGGTG-CCATGAAGATC  48

seq1  AGAAGAGAGCATCAGGTCTCCTAAACTCGAGTTATCTGTGGAAGTGCGTT  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAAGAGAGCATCAGGTCT-CTAAACTCGAGTTATCTGTGGAAGTGCGTT  97

seq1  GCCCAATGTGGGATTTGAGAATTGAAGTTGAGCCCATTGAATGAGCAGTA  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCCAATGTGGGATTTGAGAATTGAAGTTGAGCCCAATGAATGAGCAGTA  147

seq1  CA-TTTTTACCTCCTAACTCAGATTTCCAGCCCCC-AAAATCATTTTGTT  198
      || |||||||||||||||||||||||||||||||| ||||||| | ||||
seq2  CATTTTTTACCTCCTAACTCAGATTTCCAGCCCCCAAAAATCA-TATGTT  196

seq1  TCCTTGTTCACATAAGTTGCATTTC-TTTTCTGGATCCAATTTCTAGGTA  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTTGTTCACATAAGTTGCATTTCTTTTTCTGGATCCAATTTCTAGGTA  246

seq1  AATATAATAATGAAAATCAATATTTATGGAGTGATCTGTATATTCCAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAATGAAAATCAATATTTATGGAGTGATCTGTATATTCCAGGC  296

seq1  ATGGCAAAAGACTACTATATTATTTT-AGCCCTATCTCTTTTATATTTTA  346
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGCAAAAGACTACTATATTATTTTAAGCCCTATCTCTTTTATATTTTA  346

seq1  ACATCAAAGAATCTGTGTGATGTTTCATTTTCACCATCAGTTCACTGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAGAATCTGTGTGATGTTTCATTTTCACCATCAGTTCACTGGAT  396

seq1  TGAGAAGTGCCTAGAAGGTTATTTAAGTTCTGTATACTCCTTTGGAAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTGCCTAGAAGGTTATTTAAGTTCTGTATACTCCTTTGGAAATG  446

seq1  CTTCCAGAAAGAATCAACTAAGCAGGAAAATGAACCTGAATGGGCACAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAAGAATCAACTAAGCAGGAAAATGAACCTGAATGGGCACAGC  496

seq1  ATGTTCTCATAGGTTGAGGACAAAATGGAAGAAATGTGGTAAGGGGATGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCATAGGTTGAGGACAAAATGGAAGAAATGTGGTAAGGGGATGA  546

seq1  CTGCACCTGCATTCTTTCTTATTGGTTCCTGTCAGCCTTGTTGTAAGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTGCATTCTTTCTTATTGGTTCCTGTCAGCCTTGTTGTAAGCTG  596

seq1  CTCTACTTGACTGCCCTCTTCCTACTATGATGCAGTGAAAAGTCTGAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTGACTGCCCTCTTCCTACTATGATGCAGTGAAAAGTCTGAAAC  646

seq1  CATGAGCCAAAAGTAACCTATCTTAGCTCTCTGATTTAATGAATACAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCCAAAAGTAACCTATCTTAGCTCTCTGATTTAATGAATACAGGC  696

seq1  TCCTACTGGGATTCCCTATCTCTGATTTCCTTACTCTAGTTTCTGGCATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGGGATTCCCTATCTCTGATTTCCTTACTCTAGTTTCTGGCATA  746

seq1  TGGCACAACAATATCCATGGCTGCAGAAGCTGAAAGTGATGAGGTGGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAACAATATCCATGGCTGCAGAAGCTGAAAGTGATGAGGTGGGTG  796

seq1  TGGGCTCAGGCACACTCTGGTCATTACCAAACTTCTAGCAAAATCAGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAGGCACACTCTGGTCATTACCAAACTTCTAGCAAAATCAGAGA  846

seq1  AAGGAATTC  855
      |||||||||
seq2  AAGGAATTC  855