BAC Information

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BAC

Clone NameB6Ng01-169C16
Chromosome4 (Build37)
Map Location 134,044,082 - 134,196,474
singlet/doubletdoublet
Overlap genePaqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C16.bB6Ng01-169C16.g
ACCDH960215DH960216
length1,1431,017
definitionDH960215|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C16, 5' end.DH960216|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,195,334 - 134,196,474)(134,044,082 - 134,045,106)
sequence
gaattcagccagcgctctaggttccttctgggaaacctgtgaatggtctt
cagtgtgtggcgtgactggagaggaacggctgtctacagggccgagagct
tggtagagggtgtggtgggtgcccctggccaccagcatcgtctcaccggg
gcctggtcccctgctctttcccgcagatgatgcggttttcctggcagaat
taccgccgttatgcgatgggcaagaatgagctccggccactcacaaagga
cggcttcgagggcagcatgtttggtgagttgacacagacctctggggcct
ccagtgcttctgtcccttcctaggctcttccaagcttttctggactcaga
ggacccaagtgctcctgtccgctcttatatcctcacttctgagcgatgca
gcttgggaaagtgaggctggtgagggaggggaacatggaagactgggtaa
atccaccttacaggagggagggtgatggcaaggtggcgttgtctccagag
agaatgaatatgtgtctaaagaggccccgtttgggttgcctttagataaa
atcttggggtgtcctttatgttggctggtgacagcaggtcagccacgtgc
cctcacgtttctcctgaagcccttctggctgtgtcccctctttactgctc
cattctttgaacccagagcccctctctgcatctcctaaaggctgcaagct
cagtctcctattttcggacgtcactcctctgcctgtcatggtgctagctc
ctgctctacaggccctctagcaagaagatgctgggggcagcctgagcacc
tcctttctttagggaaggatgctgtgctggaccagataaccgcagcacca
tatcccccacttcctcactcccatggatacaggctgctggagttggatcc
agagaagcaagcctgatacggaaaccccaggaaatctgaaggtgactaga
tgcgggagcccagggcctgtgtgtggacccgtcattatcatggttagcgt
tacaggaaatatgatccagacccacattcttcctccagtagtcagcgctg
gaggaactctgcctgcccagaagaatcacccctggtggcagtgcaatggc
aagggataggtggaatttgagcagctcttgcatttatgaatgc
gaattcagagcccagggtctgaccataaactctgagagacatcaggaaac
caggttttgaatccaggacgtagactctgtttgcttaggcctgggttcgt
agctcaggggcaggatgcttgcttgaccgtgtacctcagaggccttttcc
aggtaggagagaggaggctggcagagcctaggtgtttctgagtgctactc
actaaggcatggcagcgcaatatttgtttctcctcccactgtacttttta
cctttcccacagaagtgagcagcactgagtggctcggtttgaccagctaa
ctaggacatgtgacatgctccactctacagcagaaagaatgctgcctctc
caaattcagttgttttaaatatcccattgaggggctggagagatggctca
gcaatgaagaacactgacagttcttccagaggtcctaaattcaattccca
gcaattacagatggtggcccacaaccatctgtaatatgatctgatgccct
cttctggtatacacgcagatagagtacttgcatgtaaaataaacaaatct
ttaaaaataaaatcacactgagcaatttgatttaaagctgattaaaggcc
tgagaaagtcagtctagaacccagatctttctcacttccctcgctcctaa
cgtgcatgctgagagaaattccttgggccacacggagaccaaatcaccac
agtcaacttccacccataccctaagattctctctcctacctagaaagaaa
ccaaggccagggaccacaccctgatggacttcccttgtgaatgaacatgt
gtctcttgggttcactcaaacttcaagaattattgtggaggttcatttcg
gttcttattatttatttatttatttatttatttattatttatttatttat
ttatttgagacagggtttctcttgggcagctctggctctctggaactctc
tctgtagatcaggtggtcttgaactcacagagatccacctgcttttgctc
ccgagtgcgggattaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134195334_134196474
seq2: B6Ng01-169C16.b_46_1188 (reverse)

seq1  GCATTCATAAATGCATGAAGCTGCTCAAA-TCCAC--ATCCCTTGCCATT  47
      ||||||||||||||| | ||||||||||| |||||  |||||||||||||
seq2  GCATTCATAAATGCAAG-AGCTGCTCAAATTCCACCTATCCCTTGCCATT  49

seq1  GCCACTGCCA-CAGGGGTGACTCATCTGGGCAGGCAGAGATCCTCCAGCG  96
      | |||||||| ||||||||| || ||||||||||||||| ||||||||||
seq2  G-CACTGCCACCAGGGGTGATTCTTCTGGGCAGGCAGAGTTCCTCCAGCG  98

seq1  CTGACTACTGGAGG-AGAATGTGGGTCTGGATCATATTTCCTGTAACGCT  145
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGACTACTGGAGGAAGAATGTGGGTCTGGATCATATTTCCTGTAACGCT  148

seq1  AACCATGATAATGACGGGTCCACACACAGGCCCTGGGCTCCCGCATCTAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGATAATGACGGGTCCACACACAGGCCCTGGGCTCCCGCATCTAG  198

seq1  TCACCCTTCAGATTTCCCTGGGGTTTCCGTATCAGGCTTGCTTCTCTGGA  245
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCA-CCTTCAGATTT-CCTGGGGTTTCCGTATCAGGCTTGCTTCTCTGGA  246

seq1  TCCAACTCCAGCAGCCTGTATTCCATGGGAGTGAGG-AGTGGGGGATATG  294
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TCCAACTCCAGCAGCCTGTA-TCCATGGGAGTGAGGAAGTGGGGGATATG  295

seq1  GTGCTGCGGTTATCTGGTCCAGCACAGCATCCTTCCCTAAAGAAAGGAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCGGTTATCTGGTCCAGCACAGCATCCTTCCCTAAAGAAAGGAGG  345

seq1  TGCTCAGGCTGCCCCCAGCATCTTCTTGCTAGAGGGCCTGTAGAGCAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGGCTGCCCCCAGCATCTTCTTGCTAGAGGGCCTGTAGAGCAGGA  395

seq1  GCTAGCACCATGACAGGCAGAGGAGTGACGTCCG-AAATAGGAGACTGAG  443
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTAGCACCATGACAGGCAGAGGAGTGACGTCCGAAAATAGGAGACTGAG  445

seq1  CTTGCAGCCTTTAGGAGATGCAGAGAGGGGCTCTGGGTTCAAAGAATGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCCTTTAGGAGATGCAGAGAGGGGCTCTGGGTTCAAAGAATGGA  495

seq1  GCAGTAAAGAGGGGACACAGCCAGAAGGGCTTCAGGAGAAACGTGAGGGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAGAGGGGACACAGCCAGAAGGGCTTCAGGAGAAACGTGAGGGC  545

seq1  ACGTGGCTGACCTGCTGTCACCAGCCAACATAAAGGACACCCCAAGATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCTGACCTGCTGTCACCAGCCAACATAAAGGACACCCCAAGATTT  595

seq1  TATCTAAAGGCAACCCAAACGGGGCCTCTTTAGACACATATTCATTCTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGGCAACCCAAACGGGGCCTCTTTAGACACATATTCATTCTCT  645

seq1  CTGGAGACAACGCCACCTTGCCATCACCCTCCCTCCTGTAAGGTGGATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAACGCCACCTTGCCATCACCCTCCCTCCTGTAAGGTGGATTT  695

seq1  ACCCAGTCTTCCATGTTCCCCTCCCTCACCAGCCTCACTTTCCCAAGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCTTCCATGTTCCCCTCCCTCACCAGCCTCACTTTCCCAAGCTG  745

seq1  CATCGCTCAGAAGTGAGGATATAAGAGCGGACAGGAGCACTTGGGTCCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTCAGAAGTGAGGATATAAGAGCGGACAGGAGCACTTGGGTCCTC  795

seq1  TGAGTCCAGAAAAGCTTGGAAGAGCCTAGGAAGGGACAGAAGCACTGGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAGAAAAGCTTGGAAGAGCCTAGGAAGGGACAGAAGCACTGGAG  845

seq1  GCCCCAGAGGTCTGTGTCAACTCACCAAACATGCTGCCCTCGAAGCCGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGGTCTGTGTCAACTCACCAAACATGCTGCCCTCGAAGCCGTC  895

seq1  CTTTGTGAGTGGCCGGAGCTCATTCTTGCCCATCGCATAACGGCGGTAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGAGTGGCCGGAGCTCATTCTTGCCCATCGCATAACGGCGGTAAT  945

seq1  TCTGCCAGGAAAACCGCATCATCTGCGGGAAAGAGCAGGGGACCAGGCCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGAAAACCGCATCATCTGCGGGAAAGAGCAGGGGACCAGGCCC  995

seq1  CGGTGAGACGATGCTGGTGGCCAGGGGCACCCACCACACCCTCTACCAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGACGATGCTGGTGGCCAGGGGCACCCACCACACCCTCTACCAAG  1045

seq1  CTCTCGGCCCTGTAGACAGCCGTTCCTCTCCAGTCACGCCACACACTGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGCCCTGTAGACAGCCGTTCCTCTCCAGTCACGCCACACACTGAA  1095

seq1  GACCATTCACAGGTTTCCCAGAAGGAACCTAGAGCGCTGGCTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTCACAGGTTTCCCAGAAGGAACCTAGAGCGCTGGCTGAATTC  1143

seq1: chr4_134044082_134045106
seq2: B6Ng01-169C16.g_67_1082

seq1  GAATTCAGAGCCCAGGGTCTGACCATAAACTCTGAGAGACATCAGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCCAGGGTCTGACCATAAACTCTGAGAGACATCAGGAAAC  50

seq1  CAGGTTTTGAATCCAGGACGTAGACTCTGTTTGCTTAGGCCTGGGTTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGAATCCAGGACGTAGACTCTGTTTGCTTAGGCCTGGGTTCGT  100

seq1  AGCTCAGGGGCAGGATGCTTGCTTGACCGTGTACCTCAGAGGCCTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGCAGGATGCTTGCTTGACCGTGTACCTCAGAGGCCTTTTCC  150

seq1  AGGTAGGAGAGAGGAGGCTGGCAGAGCCTAGGTGTTTCTGAGTGCTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGAGAGAGGAGGCTGGCAGAGCCTAGGTGTTTCTGAGTGCTACTC  200

seq1  ACTAAGGCATGGCAGCGCAATATTTGTTTCTCCTCCCACTGTACTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGCATGGCAGCGCAATATTTGTTTCTCCTCCCACTGTACTTTTTA  250

seq1  CCTTTCCCACAGAAGTGAGCAGCACTGAGTGGCTCGGTTTGACCAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCACAGAAGTGAGCAGCACTGAGTGGCTCGGTTTGACCAGCTAA  300

seq1  CTAGGACATGTGACATGCTCCACTCTACAGCAGAAAGAATGCTGCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACATGTGACATGCTCCACTCTACAGCAGAAAGAATGCTGCCTCTC  350

seq1  CAAATTCAGTTGTTTTAAATATCCCATTGAGGGGCTGGAGAGATGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAGTTGTTTTAAATATCCCATTGAGGGGCTGGAGAGATGGCTCA  400

seq1  GCAATGAAGAACACTGACAGTTCTTCCAGAGGTCCTAAATTCAATTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAGAACACTGACAGTTCTTCCAGAGGTCCTAAATTCAATTCCCA  450

seq1  GCAATTACAGATGGTGGCCCACAACCATCTGTAATATGATCTGATGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACAGATGGTGGCCCACAACCATCTGTAATATGATCTGATGCCCT  500

seq1  CTTCTGGTATACACGCAGATAGAGTACTTGCATGTAAAATAAACAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTATACACGCAGATAGAGTACTTGCATGTAAAATAAACAAATCT  550

seq1  TTAAAAATAAAATCACACTGAGCAATTTGATTTAAAGCTGATTAAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATCACACTGAGCAATTTGATTTAAAGCTGATTAAAGGCC  600

seq1  TGAGAAAGTCAGTCTAGAACCCAGATCTTTCTCACTTCCCTCGCTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTCAGTCTAGAACCCAGATCTTTCTCACTTCCCTCGCTCCTAA  650

seq1  CGTGCATGCTGAGAGAAATTCCTTGGGCCACACGGAGACCAAATCACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATGCTGAGAGAAATTCCTTGGGCCACACGGAGACCAAATCACCAC  700

seq1  AGTCAACTTCCACCCATACCCTAAGATTCTCTCTCCTACCTAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTTCCACCCATACCCTAAGATTCTCTCTCCTACCTAGAAAGAAA  750

seq1  CCAAGGCCAGGGACCACACCCTGATGGACTTCCCTTGTGAATGAACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCAGGGACCACACCCTGATGGACTTCCCTTGTGAATGAACATGT  800

seq1  GTCTCTTGGGTTCACTCAAACTTCAAGAATTATTGTGGAGGTTCATTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGGGTTCACTCAAACTTCAAGAATTATTGTGGAGGTTCATTTCG  850

seq1  GTTCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  900
      |||||||     ||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTTA-----TTATTTATTTATTTATTTATTTATTTA-TTATTTATTT  894

seq1  ATTTATTTATTTTGAGACAGGGTTTCTC-TGGGCAGCCCTGGCTCTTCTG  949
      ||||||||| |||||||||||||||||| |||||||| ||||||| ||||
seq2  ATTTATTTA-TTTGAGACAGGGTTTCTCTTGGGCAGCTCTGGCTC-TCTG  942

seq1  GAACTCTCTCTGTAGATCAGGGTGGTCTTGAACTCACAGAGATCCACCTG  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAACTCTCTCTGTAGATCA-GGTGGTCTTGAACTCACAGAGATCCACCTG  991

seq1  CCTTTGCCTCCCGAGTGCTGGATTAA  1025
      | |||| ||||||||||| |||||||
seq2  CTTTTG-CTCCCGAGTGCGGGATTAA  1016