BAC Information

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BAC

Clone NameB6Ng01-169E21
Chromosome4 (Build37)
Map Location 146,065,974 - 146,327,370
singlet/doubletdoublet
Overlap geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E21.bB6Ng01-169E21.g
ACCDH960319DH960320
length1,049443
definitionDH960319|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E21, 5' end.DH960320|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,326,318 - 146,327,370)(146,065,974 - 146,066,430)
sequence
gaattcaataggagacccaaaaatagacccacacacctacggacagtacg
caggccacacacacacacaagtgcaggtagctgcagaggacaggagaggg
ccttgtgctttgaagctagctctaagtgtccagctccagtctttttcttt
ttttttttttttaaactttgtaagtatttatcattgctcatcctgtgtga
catttagagctatatcacagttttagtgaggttgccaaggatatgttgtc
agtttatatacattcctgcatattaagaagtgatttagaggcttggggag
gcagctcagtaattaaaagcactctgctgcacttgtggagcagggttgaa
ttcccaggactcacatggtggatcagaactgaaactccaattccaggaag
tacaatgtcctcttctgacctctgtgggcaccaggcatgtatgtgatggg
gcacagatacacatgtaggcgaaaacacccttataccaaaaaataatatg
ttttcaataaaataagaaaaatgtttaaaaggaaagtagtaactcaggct
gggaatgtgctagcctggtaccacaaaccttgcattcagagctcagaccc
atgtcacatgttgagatggtacacgcttttagtcccctcagaatttgtga
ggtggaagccgaaggattaaagagtcaggcacatcctctgtgacatagtc
agtttgaggaagaccagcctgagctacatgagaccctctcttgaaacaca
aaggaggcaaagaatgactgtggtccaggattctggggtcactgccccca
gctttgattacaaaccaccagctgtgtacagtatgcagtgatcagaaccc
acctcacagctaataatgcttttgctccttggcatcaagaagaaaggcca
ggcacttttccaaatgctttagaaataaaaagttgtaattaattctccac
cacttggagcaaggatgctttttgtcagccacattttaagagaagaacta
ggatctggataaaatggcagcttggtgttagagcctggctgctctcagg
aataggtggttataaatacaaaagaaaagaaaagaaagaagaccctgaaa
agaaaatgcagtcaggtgaataataatcattcatagagaatgtgtgtgag
acagattatcagacttgaagatatatagtaggttctgttaaccctgagtg
tccccagagaaaaaccaatttctccatgtggaccagctttatcaaataat
acatcctgaccaagagatagactttggtcacatgctacaggcattttata
ggccattgtagtttcctatgaggctttattattttcctaagacatgcaac
ctgcagcacttcaagaagatacctggttcttgggctggtggtgaggttaa
tttttggcattttagtctgagggagaaagcattcagagatatctggttgg
gtccagactgaagcaggcaggtgggggaggggaattgaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146326318_146327370
seq2: B6Ng01-169E21.b_44_1092 (reverse)

seq1  CCTGAAGAGCAGCCAGTGCTCTTAACCACCAAGCTGCCA-TCTATCCAGA  49
      |||| ||||||||||| |||||  | ||||||||||||| | ||||||||
seq2  CCTG-AGAGCAGCCAG-GCTCT--AACACCAAGCTGCCATTTTATCCAGA  46

seq1  TCCTAGTTCTTCTCTTTAAAATGTGGCTGGCAAAAAGCATCCTTGCTTCA  99
      |||||||||||||| |||||||||||||| ||||||||||||||||| ||
seq2  TCCTAGTTCTTCTC-TTAAAATGTGGCTGACAAAAAGCATCCTTGCTCCA  95

seq1  AGTGGTGGAGAATTAAATACAACTTTTTATTTCTAAAGCATTTGGAAAAG  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGGTGGAGAATTAATTACAACTTTTTATTTCTAAAGCATTTGGAAAAG  145

seq1  TGCCTGGCCTTTCTTCTTGATGCCAAGGAGCAAAAGCATTATTAGCTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCCTTTCTTCTTGATGCCAAGGAGCAAAAGCATTATTAGCTGTG  195

seq1  AGGTGGGTTCTGATCACTGCATACTGTACACAGCTGGTGGTTTGTAAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTGGGTTCTGATCACTGCATACTGTACACAGCTGGTGGTTTGT-AATC  244

seq1  AAAGCTGGGGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCC  294

seq1  TCCTTTGTGTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCTC  344

seq1  AAACTGACTATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTCGGCTT  394

seq1  CCACCTCACAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGT  444

seq1  GACATGGGTCTGAGCTCTGAATGCAAGGTTTGTGGTACCAGGCTAGCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGTCTGAGCTCTGAATGCAAGGTTTGTGGTACCAGGCTAGCACA  494

seq1  TTCCCAGCCTGAGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCCTGAGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATT  544

seq1  GAAAACATATTATTTTTTGGTATAAGGGTGTTTTCGCCTACATGTGTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATATTATTTTTTGGTATAAGGGTGTTTTCGCCTACATGTGTATC  594

seq1  TGTGCCCCATCACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCATCACATACATGCCTGGTGCCCACAGAGGTCAGAAGAGGACA  644

seq1  TTGTACTTCCTGGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTCCTGGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCT  694

seq1  GGGAATTCAACCCTGCTCCACAAGTGCAGCAGAGTGCTTTTAATTACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCAACCCTGCTCCACAAGTGCAGCAGAGTGCTTTTAATTACTGA  744

seq1  GCTGCCTCCCCAAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCCCAAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATAT  794

seq1  AAACTGGCAACATATCCTTGGCAACCTCACTAAAACTGTGATATAGCTCT  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACAACATATCCTTGGCAACCTCACTAAAACTGTGATATAGCTCT  844

seq1  AAATGTCACACAGGATGAGCAATGATAAATACTTACAAAGTTT-AAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATGTCACACAGGATGAGCAATGATAAATACTTACAAAGTTTAAAAAAA  894

seq1  AAAAAAAAGAAAAAGACTGGAGCTGGACACTTAGAGCTAGCTTCAAAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAGACTGGAGCTGGACACTTAGAGCTAGCTTCAAAGCA  944

seq1  CAAGGCCCTCTCCTGTCCTCTGCAGCTACCTGCACTTGTGTGTGTGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCCTCTCCTGTCCTCTGCAGCTACCTGCACTTGTGTGTGTGTGTG  994

seq1  GCCTGCGTACTGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTACTGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTG  1044

seq1  AATTC  1053
      |||||
seq2  AATTC  1049

seq1: chr4_146065974_146066430
seq2: B6Ng01-169E21.g_66_514

seq1  GAATTCAATAGGTGGTTATAAATACAAAAAAAGAAAAAAGAAAGAAAGAA  50
      ||||||||||||||||||||||||||||     | ||||||   ||||||
seq2  GAATTCAATAGGTGGTTATAAATACAAA-----AGAAAAGA---AAAGAA  42

seq1  AGAAGACCCTGAAAAGAAAATGCAGTCAGGTGAATAATAATCATTCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCTGAAAAGAAAATGCAGTCAGGTGAATAATAATCATTCATAG  92

seq1  AGAATGTGTGTGAGACAGATTATCAGACTTGAAGATATATAGTAGGCTCT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAATGTGTGTGAGACAGATTATCAGACTTGAAGATATATAGTAGGTTCT  142

seq1  GTTAACCCTGAGTGTCGCCAGAGAAAAACCAATTTCTCTATGTGGGCCAG  200
      |||||||||||||||| ||||||||||||||||||||| |||||| ||||
seq2  GTTAACCCTGAGTGTCCCCAGAGAAAAACCAATTTCTCCATGTGGACCAG  192

seq1  CTTTATCAAATAATACATCCTGACCAAGAGATAGACTTTGGTCACATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAAATAATACATCCTGACCAAGAGATAGACTTTGGTCACATGCT  242

seq1  ACAGGCATTTTATAGGCCATTATAGTTTCCTATGAGGCTTTATCATTTTC  300
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  ACAGGCATTTTATAGGCCATTGTAGTTTCCTATGAGGCTTTATTATTTTC  292

seq1  CTAAGACATGCAACCCGCAGCACTTCAAGAAGATACCTGGTTCTTGTGCT  350
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  CTAAGACATGCAACCTGCAGCACTTCAAGAAGATACCTGGTTCTTGGGCT  342

seq1  GGTGGTGAGGTTAATTTTTGGCATTTTAGTCTGAGGGAGAAAGCATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAGGTTAATTTTTGGCATTTTAGTCTGAGGGAGAAAGCATTCAG  392

seq1  AGATAACTGGTTGGGTCCAGACTGAGGCAGGCAGGTGGGGGAGGGGAATT  450
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGATATCTGGTTGGGTCCAGACTGAAGCAGGCAGGTGGGGGAGGGGAATT  442

seq1  GAGGATG  457
      |||||||
seq2  GAGGATG  449