BAC Information

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BAC

Clone NameB6Ng01-169H04
Chromosome4 (Build37)
Map Location 7,880,252 - 7,881,332
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H04.bB6Ng01-169H04.g
ACCDH960425DH960426
length6601,061
definitionDH960425|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H04, 5' end.DH960426|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccagtatatttataaaagtacttagtgctacgaactttcctct
tagcacagcttttatcatgtcctataagtttttgactatgctgtgcattc
ctgttcaataatttctagaaagtctttaatttctttatttcctatccagt
aagcattcagtaatgagttgttctgtttctatgaatttttagaatttcta
ttgtttctgttttgtggaaatccagctttaatccattgttatctgataga
atacaaggacttacttaaattttcttgtaccttttaaggcttgctttgtg
accaaatatatggtcaattttggagactgtttcatgaggtgctaagaaaa
aggtatattcttttgtgtttgaaggaaatgttccatagatatctgttagg
tcaatttcctatataatatctgtgatctctgttatttttctctttagttt
atgtctgagtgtcctgtccattggtaagagtggagtattgaagagtctca
tcatcaatgtgtgagggtcaatgtatgatttaagctttagtaatattttt
tcatttgttttttctattcatatgtgtgtgtttgaatgtctatgtaaatg
taaatttatatgtatatgtaaatgtatatgtttatgtaatgtatatgtgt
atgtaatgta
gaattccttgtttaaaataacctcatttacccttgcaaatgctgtcctgt
actcagagaacattatgtggggacagttgtaggctttagcagacacagac
ccacttctatgtcactagcccgttttcctctttgtgtctttcttcaagtt
tctgcacactttcctgatcctggtcataataacagttcagcctgctgagg
actttgtgttgtctccgtgttgagcactactgactgagaaggcagagagc
aaacttccctccgccattccactgccatgcatctgtggacatacctgggt
gatggtgaatggtgctttcacctcacaggatttcagcccaggggcttccc
tttatttaaagtacactgccatatgttttgttctcccaaataactattcc
agtgacatgttattaaaaaccagataattccgggttgtgaagctcagaat
gcaatgttttcagcacatttgtgaggctatgtaaacattgctagggctta
atctttgaactttttcatctcatcagaaaaatctttcatactttggcaat
acctgtgtatccatacaggatactaatctgtattctgcttctatatattc
ttcttctggatatataatgcaggtgaattcataaacatatgctaattcgt
gaccagcttcctccctcaaaagtagtagctcatggttcaccctgctgtgt
caagggcatcatttttatagtgctgcatattccactaaaggaaatactat
tattatatttagttccttattaagtaatgaacatttgaattattttcaat
ttggggttattttgcactaattgatttgttaattaatatcaaataatatt
aatctatataatttgagcggataaaccaaacagcagaccagccaagtggt
tccaagtggaaaggtttattgtgcagagatagagggcagtagaggcagag
agagaaaatgagaagggggggggagagaaaagaagagagagagtaaaatg
aagcgaggagggggtgatcacttatttatggaaatgacgttacacctgag
ggcggaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_7880252_7881332
seq2: B6Ng01-169H04.g_66_1126 (reverse)

seq1  TCAGTTCCCGCCCTCAGGTGTAACGTCATTTTCCATATAAATTAGGTGAT  50
      |||||| ||||||||||||||||||||| |||||||   || || |||||
seq2  TCAGTT-CCGCCCTCAGGTGTAACGTCA-TTTCCAT---AAATAAGTGAT  45

seq1  CACCCCCTCCTCGCTCTCTTTTTCTTCTCTCTTTCTTCTTTTTCTTCTCC  100
      ||||||||||||||| || |||  | |||||| |||||||    ||||| 
seq2  CACCCCCTCCTCGCT-TCATTT--TACTCTCTCTCTTCTT----TTCTCT  88

seq1  CCCCCCCCTTTCTCTTTTTCCTCTTCTCTGCCCTTCTACTGCCCCTCTAT  150
      |||||||| ||||| |||| ||| ||||||||  ||||||| ||||||||
seq2  CCCCCCCCCTTCTCATTTT-CTC-TCTCTGCC--TCTACTG-CCCTCTAT  133

seq1  CTCTGCACAATAAACCTTTCCCACTTGGAACCACCTTGGCCTGGTCTGCT  200
      ||||||||||||||||||| ||||||||||||| ||||| ||||||||||
seq2  CTCTGCACAATAAACCTTT-CCACTTGGAACCA-CTTGG-CTGGTCTGCT  180

seq1  GTTTGGTTTATCCGCTCAAATTATATAGATTAATATTATTTGATATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTATCCGCTCAAATTATATAGATTAATATTATTTGATATTAAT  230

seq1  TAACAAATCAATTAGTGCAAAATAACCCCAAATTGAAAATAATTCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATCAATTAGTGCAAAATAACCCCAAATTGAAAATAATTCAAATG  280

seq1  TTCATTACTTAATAAGGAACTAAATATAATAATAGTATTTCCTTTAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACTTAATAAGGAACTAAATATAATAATAGTATTTCCTTTAGTGG  330

seq1  AATATGCAGCACTATAAAAATGATGCCCTTGACACAGCAGGGTGAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGCACTATAAAAATGATGCCCTTGACACAGCAGGGTGAACCAT  380

seq1  GAGCTACTACTTTTGAGGGAGGAAGCTGGTCACGAATTAGCATATGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTACTTTTGAGGGAGGAAGCTGGTCACGAATTAGCATATGTTTA  430

seq1  TGAATTCACCTGCATTATATATCCAGAAGAAGAATATATAGAAGCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACCTGCATTATATATCCAGAAGAAGAATATATAGAAGCAGAAT  480

seq1  ACAGATTAGTATCCTGTATGGATACACAGGTATTGCCAAAGTATGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAGTATCCTGTATGGATACACAGGTATTGCCAAAGTATGAAAGA  530

seq1  TTTTTCTGATGAGATGAAAAAGTTCAAAGATTAAGCCCTAGCAATGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGATGAGATGAAAAAGTTCAAAGATTAAGCCCTAGCAATGTTTA  580

seq1  CATAGCCTCACAAATGTGCTGAAAACATTGCATTCTGAGCTTCACAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTCACAAATGTGCTGAAAACATTGCATTCTGAGCTTCACAACCC  630

seq1  GGAATTATCTGGTTTTTAATAACATGTCACTGGAATAGTTATTTGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATCTGGTTTTTAATAACATGTCACTGGAATAGTTATTTGGGAGA  680

seq1  ACAAAACATATGGCAGTGTACTTTAAATAAAGGGAAGCCCCTGGGCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATATGGCAGTGTACTTTAAATAAAGGGAAGCCCCTGGGCTGAA  730

seq1  ATCCTGTGAGGTGAAAGCACCATTCACCATCACCCAGGTATGTCCACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGAGGTGAAAGCACCATTCACCATCACCCAGGTATGTCCACAGA  780

seq1  TGCATGGCAGTGGAATGGCGGAGGGAAGTTTGCTCTCTGCCTTCTCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCAGTGGAATGGCGGAGGGAAGTTTGCTCTCTGCCTTCTCAGTC  830

seq1  AGTAGTGCTCAACACGGAGACAACACAAAGTCCTCAGCAGGCTGAACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGCTCAACACGGAGACAACACAAAGTCCTCAGCAGGCTGAACTGT  880

seq1  TATTATGACCAGGATCAGGAAAGTGTGCAGAAACTTGAAGAAAGACACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGACCAGGATCAGGAAAGTGTGCAGAAACTTGAAGAAAGACACAA  930

seq1  AGAGGAAAACGGGCTAGTGACATAGAAGTGGGTCTGTGTCTGCTAAAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAACGGGCTAGTGACATAGAAGTGGGTCTGTGTCTGCTAAAGCC  980

seq1  TACAACTGTCCCCACATAATGTTCTCTGAGTACAGGACAGCATTTGCAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGTCCCCACATAATGTTCTCTGAGTACAGGACAGCATTTGCAAG  1030

seq1  GGTAAATGAGGTTATTTTAAACAAGGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  GGTAAATGAGGTTATTTTAAACAAGGAATTC  1061