BAC Information

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BAC

Clone NameB6Ng01-169L10
Chromosome4 (Build37)
Map Location 90,989,243 - 90,990,461
singlet/doubletsinglet
Overlap geneElavl2
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneLOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169L10.bB6Ng01-169L10.g
ACCDH960617DH960618
length1,1331,189
definitionDH960617|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L10, 5' end.DH960618|Mus musculus domesticus DNA, BAC clone: B6Ng01-169L10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggtgttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacaggctccca
atgagagctagagaaagtacccatgagctaaggatctcaaccctatagtg
acacatatgactacagtaccctgagctctgactctagctgcatatgtatc
aagatgctagtcgcatcactgaagaagccatgaacgcgacttggtgtccc
gtacaggaacgcagcaaggggggagtggtgcta
gaattcaatgaatcctttgactaaaacagggaaaggtagaagaaaaaagg
ctactgtttattgactacttattctatgccaaataatttaaaaaattcat
ttaatcatcatgcgcattatgagctctatatattattttcaatgaactat
atatatgatcttcaatttacaaatgaggggaatatagaaggcaggtaggc
ctggtacttgcgaagtaggtgttgtgctgtgtgagccatattctcactca
gccttctttcttactttattgagacaaggtctcaaggtctgagttgctta
ggcggccttaaactcatactgtagttcaggcaggctttgaacttatgatc
ctcctgcctcagtctctcagagagctaggattctaggcttgtaccacacc
tagcccacctataaatgaggatttcattacacatgtacaaagcagaaaca
ctgggctctgaaactagggttagaatcccattgaaagtctcctttgcttg
catgcttaccccatttgcaatgtactttccaattccaaactacatggagc
ttcccccaaatagccaacatcctacaaccatcactttgcaaggcttttgc
tgactctatgctgcctcacctccctaaggaagctgccacctatttatcac
atgcccagcactgccatggcacacaataaatcctagcaattccccaacag
ttccattcacttccagtctgctttccactgttatttaagctctcttcacc
tgcagcatcctcactacctttcttctgactaaaaggagcatccatctaca
aagaggagatatactgccttcaccaaggattctgagaaacactgagttag
gcaagataataacgatccagtgttctggaaatccacacctcccacatgca
ccttacatgtcttgccttttcgtcataagcacgaaaattctaacaaagca
gaataatagccatgaaggcatcaagcagcaggtgttcactcactattagc
atatgggcttgcattccttgcaggaggaagagtctttatcacaaccccag
tacctgcagagtaaatcatctgggttgtctgtatagaagcaaaccatgtc
accattaacaatacacatatcccttcagaataaatactcagtataacctc
agcttgataagcacataacaccaaacctagcgtaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90989243_90990461
seq2: B6Ng01-169L10.g_68_1256

seq1  GAATTCAATGAATCCTTTGACTAAAACAGGGAAAGGTAGAAGAAAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATCCTTTGACTAAAACAGGGAAAGGTAGAAGAAAAAAGG  50

seq1  CTACTGTTTATTGACTACTTATTCTATGCCAAATAATTTAAAAAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTATTGACTACTTATTCTATGCCAAATAATTTAAAAAATTCAT  100

seq1  TTAATCATCATGCGCATTATGAGCTCTATATATTATTTTCAATGAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATCATGCGCATTATGAGCTCTATATATTATTTTCAATGAACTAT  150

seq1  ATATATGATCTTCAATTTACAAATGAGGGGAATATAGAAGGCAGGTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATCTTCAATTTACAAATGAGGGGAATATAGAAGGCAGGTAGGC  200

seq1  CTGGTACTTGCGAAGTAGGTGTTGTGCTGTGTGAGCCATATTCTCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTTGCGAAGTAGGTGTTGTGCTGTGTGAGCCATATTCTCACTCA  250

seq1  GCCTTCTTTCTTACTTTATTGAGACAAGGTCTCAAGGTCTGAGTTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTCTTACTTTATTGAGACAAGGTCTCAAGGTCTGAGTTGCTTA  300

seq1  GGCGGCCTTAAACTCATACTGTAGTTCAGGCAGGCTTTGAACTTATGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCTTAAACTCATACTGTAGTTCAGGCAGGCTTTGAACTTATGATC  350

seq1  CTCCTGCCTCAGTCTCTCAGAGAGCTAGGATTCTAGGCTTGTACCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAGTCTCTCAGAGAGCTAGGATTCTAGGCTTGTACCACACC  400

seq1  TAGCCCACCTATAAATGAGGATTTCATTACACATGTACAAAGCAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCACCTATAAATGAGGATTTCATTACACATGTACAAAGCAGAAACA  450

seq1  CTGGGCTCTGAAACTAGGGTTAGAATCCCATTGAAAGTCTCCTTTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTGAAACTAGGGTTAGAATCCCATTGAAAGTCTCCTTTGCTTG  500

seq1  CATGCTTACCCCATTTGCAATGTACTTTCCAATTCCAAACTACATGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTACCCCATTTGCAATGTACTTTCCAATTCCAAACTACATGGAGC  550

seq1  TTCCCCCAAATAGCCAACATCCTACAACCATCACTTTGCAAGGCTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAAATAGCCAACATCCTACAACCATCACTTTGCAAGGCTTTTGC  600

seq1  TGACTCTATGCTGCCTCACCTCCCTAAGGAAGCTGCCACCTATTTATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTATGCTGCCTCACCTCCCTAAGGAAGCTGCCACCTATTTATCAC  650

seq1  ATGCCCAGCACTGCCATGGCACACAATAAATCCTAGCAATTCCCCAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCACTGCCATGGCACACAATAAATCCTAGCAATTCCCCAACAG  700

seq1  TTCCATTCACTTCCAGTCTGCTTTCCACTGTTATTTAAGCTCTCTTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCACTTCCAGTCTGCTTTCCACTGTTATTTAAGCTCTCTTCACC  750

seq1  TGCAGCATCCTCACTACCTTTCTTCTGACTAAAAGGAGCATCCATCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATCCTCACTACCTTTCTTCTGACTAAAAGGAGCATCCATCTACA  800

seq1  AAGAGGAGATATACTGCCTTCACCAAGGATTCTGAGAAACACTGAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGATATACTGCCTTCACCAAGGATTCTGAGAAACACTGAGTTAG  850

seq1  GCAAGATAATAACGATCCAGTGTTCTGGAAATCCACACCTCCCACATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATAATAACGATCCAGTGTTCTGGAAATCCACACCTCCCACATGCA  900

seq1  CCTTACATGTCTTTGCCTTTTCGTCATAAGCACGAAAATTCTAACAAAGC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATGTC-TTGCCTTTTCGTCATAAGCACGAAAATTCTAACAAAGC  949

seq1  AGAATAATAGCCATGAAGGCAATCAAGGCAGCAGGTGTACACTCACTTAT  1000
      |||||||||||||||||||| ||||| ||||||||||| ||||||||   
seq2  AGAATAATAGCCATGAAGGC-ATCAA-GCAGCAGGTGTTCACTCACT--A  995

seq1  TTAGCCATATGGGCTTGCATTCCTTGCCAAGAGGAAGAGTCTTTATCACA  1050
      |||| ||||||||||||||||||||| || ||||||||||||||||||||
seq2  TTAG-CATATGGGCTTGCATTCCTTG-CAGGAGGAAGAGTCTTTATCACA  1043

seq1  ACCCCAAGTACCTGCAAGAGTAAAATCATCTTGGGTTGTCTGTATAGGAA  1100
      ||||| ||||||||| ||||| |||||||| ||||||||||||||||  |
seq2  ACCCC-AGTACCTGC-AGAGT-AAATCATC-TGGGTTGTCTGTATAG--A  1087

seq1  AGGCAACCATGGCCCACCATTAAC-ATACACATATCCCTTTCAGGATATA  1149
      ||  |||||||   |||||||||| ||||||||||||| |||||   |||
seq2  AGCAAACCATG--TCACCATTAACAATACACATATCCC-TTCAG--AATA  1132

seq1  ATTACTTTCAGTATAACCTCAAGCTTTGAGTTAAGCCAACATTACCACCA  1199
      | |||  ||||||||||||| |||||   | |||||  ||| || |||| 
seq2  AATAC--TCAGTATAACCTC-AGCTT---GATAAGC--ACA-TAACACC-  1172

seq1  AAAACCTAGCTGTTAGGTTT  1219
       |||||||||   |||||||
seq2  -AAACCTAGC--GTAGGTTT  1189