BAC Information

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BAC

Clone NameB6Ng01-169N08
Chromosome4 (Build37)
Map Location 95,481,679 - 95,653,014
singlet/doubletdoublet
Overlap gene2310009E04Rik, Hook1
Upstream geneTek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream geneCyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169N08.bB6Ng01-169N08.g
ACCDH960703DH960704
length1,175486
definitionDH960703|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N08, 5' end.DH960704|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,651,811 - 95,653,014)(95,481,679 - 95,482,170)
sequence
gaattccagtcctgcatgaacagcagtatggaagtgtaagccgaataaac
cctttcctccccaaattgcttcttggtcatgatgtttgtgcaggaataga
aaccctgactaagacaggtatgttatatgctcaacctccctctttagaga
acaaaggagaagagcaggataattgcctcaagtgcactggtacatggcaa
aacactaaacactaaagaaaacatctgttttcattagaaaaaaagttcta
tgtttatactgaaggacaagacaaataactgtcatacaaaaatgttagga
atttaacaaagttttggtttttttgttttttgttttttcgagacagggtt
tctctgtgtagccctggctgtcctggaactcactttgtagaccaggctgg
tctcgaactcagaaatccacctgcctctgcctcctgagtgctgggattaa
aagtgtgcgccaccacgcccggctttaacaaagttttaaacatgtaacat
ctacaacatacattaacaagactatattctagaatacttggaagcctgtc
tcaggggagtgagcaaaaccaatatggaacttaatgattgacgcttcgag
aaatagctattaaaggaagtaaagaatacaaatacccgaagaaggggctt
gtgaagaaaaatacaattcaattattttctaataaaactaagtcaaaatc
atattattctgtttcattttgtccagaatatgtggtcaaaaatttaagga
gctaacttgaaggactaattgtatttctaattactcataacaattacagt
gccttcgattaatgctacaaactattctggaataaaagtctatcagaaga
attcaaggtactggacttctactgtcataactgaatagaagtactggttt
tggagtagattagttaatacaaatcccaggttcactgtttggcctcccaa
agaattgttagtctttataccctcagtcctcgtggataagtgacatgaaa
agaatatacccagttacaagaaagccaattgggagatggcctcagtgcag
aaacatgtcatttgggtcgatctgcagctcccattaagtgagtgcagcag
tacatgtcctttaccccagttactagagtagaagaagccaagaaatgcat
ctgagctcatggccaccagctagcc
tgaacttcaaatcagcagtgaacatttgggattgtgtaccaggttttgtt
gaggatatattcatgtgcatgacttcttataactagagatcataattttc
atcccattattaaaggacttcaatagtcaactgccagagagagagagaga
gaatgagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagaaattttgagttcagatctggattcaaataccaacta
tggtgtgtcaatgtgggatacgattggatgattagcctcagactcttcag
aacttattttgactttagggagttgatatagcatagcaagtggcattgtt
gtttatttctttctgtttgtttggttttgttttgtcttttgagacagggt
ttctctgtgtaacagctttgactatcctggaacttacactgtagaccagg
ctggcctcaaactcacagaaattttcctagctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_95651811_95653014
seq2: B6Ng01-169N08.b_47_1221 (reverse)

seq1  GGCTAGGCTGGTTGGCAATGAGCTCCCAGGATTTGCATGTCTTTGCCCTC  50
      ||||| ||||| |||| ||||||||     |  ||||| || ||| | ||
seq2  GGCTA-GCTGG-TGGCCATGAGCTC-----AGATGCATTTC-TTGGCTTC  42

seq1  TTCTTACTTCTAGTAACTGGGGTTAAAGACATGTACTGCTGCACTCAACT  100
      ||| ||| ||||||||||||||| || ||||||||||||||||||| |||
seq2  TTC-TAC-TCTAGTAACTGGGGTAAAGGACATGTACTGCTGCACTC-ACT  89

seq1  TTTAAATGGGAGCTGCAGATCTGAACCCAAATGCACATGTTTCTGCACTG  150
      |   |||||||||||||||||   ||||||||| ||||||||||||||||
seq2  T---AATGGGAGCTGCAGATC--GACCCAAATG-ACATGTTTCTGCACTG  133

seq1  A-GCCATCTTCCCAAATTTGCCTTTTCCTTTGTAAACTGGGTATTATTCT  199
      | |||||| ||||||  ||| ||||    |||| ||||||||| ||||||
seq2  AGGCCATC-TCCCAA--TTGGCTTT---CTTGT-AACTGGGTA-TATTCT  175

seq1  TTTCATGTCCACTTTATCCACGAGGACTGAGGGTATAAAGAACTAACAAT  249
      |||||||| ||| ||||||||||||||||||||||||||| |||||||||
seq2  TTTCATGT-CAC-TTATCCACGAGGACTGAGGGTATAAAG-ACTAACAAT  222

seq1  TCTTTTGGAAGCCAAACAGTGAACCTGGGATTTGTATTAACTTAATCTTA  299
      ||||| ||| ||||||||||||||||||||||||||||||| ||||| ||
seq2  TCTTTGGGAGGCCAAACAGTGAACCTGGGATTTGTATTAAC-TAATC-TA  270

seq1  CTCCAAAACCAGTACTTCTATTCAGTTATGACAGTAGAAGTCCAGTACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACCAGTACTTCTATTCAGTTATGACAGTAGAAGTCCAGTACCT  320

seq1  TGAATTCTTCTGATAGACTTTTATTCCAGAATAGTTTGTAGCATTAATCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTTCTGATAGACTTTTATTCCAGAATAGTTTGTAGCATTAATCG  370

seq1  AAGGCACTGTAATTGTTATGAGTAATTAGAAATACAATTAGTCCTTCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTGTAATTGTTATGAGTAATTAGAAATACAATTAGTCCTTCAAG  420

seq1  TTAGCTCCTTAAATTTTTGACCACATATTCTGGACAAAATGAAACAGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTTAAATTTTTGACCACATATTCTGGACAAAATGAAACAGAAT  470

seq1  AATATGATTTTGACTTAGTTTTATTAGAAAATAATTGAATTGTATTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTTTGACTTAGTTTTATTAGAAAATAATTGAATTGTATTTTTC  520

seq1  TTCACAAGCCCCTTCTTCGGGTATTTGTATTCTTTACTTCCTTTAATAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGCCCCTTCTTCGGGTATTTGTATTCTTTACTTCCTTTAATAGC  570

seq1  TATTTCTCGAAGCGTCAATCATTAAGTTCCATATTGGTTTTGCTCACTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCGAAGCGTCAATCATTAAGTTCCATATTGGTTTTGCTCACTCC  620

seq1  CCTGAGACAGGCTTCCAAGTATTCTAGAATATAGTCTTGTTAATGTATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACAGGCTTCCAAGTATTCTAGAATATAGTCTTGTTAATGTATGT  670

seq1  TGTAGATGTTACATGTTTAAAACTTTGTTAAAGCCGGGCGTGGTGGCGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTTACATGTTTAAAACTTTGTTAAAGCCGGGCGTGGTGGCGCA  720

seq1  CACTTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTT  770

seq1  CGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  820

seq1  AGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACCAAAACTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACCAAAACTTTGT  870

seq1  TAAATTCCTAACATTTTTGTATGACAGTTATTTGTCTTGTCCTTCAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTAACATTTTTGTATGACAGTTATTTGTCTTGTCCTTCAGTAT  920

seq1  AAACATAGAACTTTTTTTCTAATGAAAACAGATGTTTTCTTTAGTGTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAACTTTTTTTCTAATGAAAACAGATGTTTTCTTTAGTGTTTA  970

seq1  GTGTTTTGCCATGTACCAGTGCACTTGAGGCAATTATCCTGCTCTTCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGCCATGTACCAGTGCACTTGAGGCAATTATCCTGCTCTTCTCC  1020

seq1  TTTGTTCTCTAAAGAGGGAGGTTGAGCATATAACATACCTGTCTTAGTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCTAAAGAGGGAGGTTGAGCATATAACATACCTGTCTTAGTCA  1070

seq1  GGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAATTTGGGGAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAATTTGGGGAGG  1120

seq1  AAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATGCAGGACTGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATGCAGGACTGG  1170

seq1  AATTC  1204
      |||||
seq2  AATTC  1175

seq1: chr4_95481679_95482170
seq2: B6Ng01-169N08.g_71_562

seq1  GAATTCTGAACTTCAAATCAGCAGTGAACATTTGGGATTGTGTACCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTTCAAATCAGCAGTGAACATTTGGGATTGTGTACCAGGT  50

seq1  TTTGTTGAGGATATATTCATGTGCATGACTTCTTATAACTAGAGATCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGGATATATTCATGTGCATGACTTCTTATAACTAGAGATCATA  100

seq1  ATTTTCATCCCATTATTAAAGGACTTCAATAGTCAACTGCCAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCCCATTATTAAAGGACTTCAATAGTCAACTGCCAGAGAGAGA  150

seq1  GAGAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200

seq1  GAGAGAGAGAGAGAGAGAGAAATTTTGAGTTCAGATCTGGATTCAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAAATTTTGAGTTCAGATCTGGATTCAAATAC  250

seq1  CAACTATGGTGTGTCAATGTGGGATACGATTGGATGATTAGCCTCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATGGTGTGTCAATGTGGGATACGATTGGATGATTAGCCTCAGACT  300

seq1  CTTCAGAACTTATTTTGACTTTAGGGAGTTGATATAGCATAGCAAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACTTATTTTGACTTTAGGGAGTTGATATAGCATAGCAAGTGGC  350

seq1  ATTGTTGTTTATTTCTTTCTGTTTGTTTGGTTTTGTTTTGTCTTTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTTATTTCTTTCTGTTTGTTTGGTTTTGTTTTGTCTTTTGAGA  400

seq1  CAGGGTTTCTCTGTGTAACAGCTTTGACTATCCTGGAACTCACACTGTAG  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGGTTTCTCTGTGTAACAGCTTTGACTATCCTGGAACTTACACTGTAG  450

seq1  ACCAGGCTGGCCTCAAACTCACAGAAATTTACCTAGCTTTGC  492
      |||||||||||||||||||||||||||||| |||||||||||
seq2  ACCAGGCTGGCCTCAAACTCACAGAAATTTTCCTAGCTTTGC  492